Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 110.54318 * 2 1 4 4 O 1.42095 * 110.54289 * 223.24789 * 2 1 3 5 5 C 1.76199 * 104.45006 * 111.62038 * 2 1 3 6 6 C 1.38256 * 119.99963 * 111.15873 * 5 2 1 7 7 C 1.38215 * 120.00468 * 180.02562 * 6 5 2 8 8 C 1.38258 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.38220 * 120.00081 * 359.74433 * 8 7 6 10 10 C 1.38208 * 120.00442 * 291.13709 * 5 2 1 11 11 C 1.50700 * 119.99833 * 0.02562 * 10 5 2 12 12 H 1.09004 * 109.46829 * 33.27026 * 11 10 5 13 13 O 1.42903 * 109.47353 * 153.26480 * 11 10 5 14 14 C 1.50701 * 109.47190 * 273.26910 * 11 10 5 15 15 H 1.07994 * 120.00005 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99634 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99635 * 179.97438 * 16 14 11 18 18 Si 1.86796 * 120.00063 * 359.72388 * 16 14 11 19 19 H 1.48494 * 109.47285 * 90.00535 * 18 16 14 20 20 H 1.48510 * 109.46633 * 210.00048 * 18 16 14 21 21 H 1.48493 * 109.47205 * 329.99724 * 18 16 14 22 22 H 1.09000 * 109.47348 * 314.58550 * 1 2 3 23 23 H 1.08994 * 109.47468 * 74.58519 * 1 2 3 24 24 H 1.09000 * 109.46928 * 194.58995 * 1 2 3 25 25 H 1.08004 * 120.00034 * 359.97438 * 6 5 2 26 26 H 1.07994 * 120.00607 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.99908 * 179.97438 * 8 7 6 28 28 H 1.07995 * 120.00071 * 180.27222 * 9 8 7 29 29 H 0.96698 * 113.99743 * 60.00306 * 13 11 10 30 30 H 0.96996 * 120.00199 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6287 1.5862 6 6 2.8447 -1.8736 1.6968 7 6 3.1891 -2.3671 2.9411 8 6 2.9431 -1.6155 4.0751 9 6 2.3576 -0.3684 3.9641 10 6 2.0082 0.1228 2.7198 11 6 1.3639 1.4798 2.5993 12 1 0.6636 1.4766 1.7640 13 8 0.6631 1.7834 3.8071 14 6 2.4267 2.5211 2.3599 15 1 3.4649 2.2294 2.3012 16 6 2.0735 3.8461 2.2156 17 7 3.0011 4.7548 2.0071 18 14 0.2771 4.3494 2.3093 19 1 -0.0754 4.6664 3.7165 20 1 0.0541 5.5479 1.4612 21 1 -0.5753 3.2344 1.8244 22 1 -0.3634 0.7214 0.7319 23 1 -0.3634 0.2731 -0.9906 24 1 -0.3633 -0.9945 0.2589 25 1 3.0365 -2.4610 0.8110 26 1 3.6504 -3.3398 3.0276 27 1 3.2119 -2.0012 5.0474 28 1 2.1694 0.2206 4.8495 29 1 1.2253 1.8034 4.5936 30 1 2.7527 5.6869 1.9052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536212030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -74.211322 kcal Electronic energy + Delta-G solvation = -17734.913628 eV Core-core repulsion = 14816.586065 eV Total energy + Delta-G solvation = -2918.327564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17827 -36.70708 -35.88560 -35.24752 -32.28454 -31.38426 -30.64355 -29.21162 -27.16487 -23.32814 -22.78551 -20.63493 -18.59682 -17.74544 -17.02548 -15.97072 -15.74686 -15.50146 -14.84680 -14.41918 -14.32433 -13.91393 -13.56738 -13.04855 -12.90739 -12.60223 -12.54760 -12.13015 -11.69076 -11.43044 -11.30565 -11.21860 -11.05182 -10.71388 -10.49924 -10.26507 -9.90195 -9.31087 -9.07371 -8.90313 -8.58068 -8.23729 -6.05993 -4.13034 0.56747 1.26193 1.70437 3.36233 3.40804 3.45379 3.52566 3.84447 4.34163 4.48608 4.67714 5.02891 5.05717 5.10392 5.17374 5.24413 5.41526 5.49937 5.67534 5.79968 5.93151 6.08657 6.24636 6.42447 6.47237 6.66476 7.01037 7.20290 7.40508 8.27063 8.63648 9.00284 9.53006 11.05438 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.011143 C = 0.008883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.719656 B = 2512.127706 C = 3151.307797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.666 4.666 2 S 2.478 3.522 3 O -0.872 6.872 4 O -0.959 6.959 5 C -0.655 4.655 6 C -0.027 4.027 7 C -0.163 4.163 8 C -0.069 4.069 9 C -0.139 4.139 10 C 0.029 3.971 11 C 0.200 3.800 12 H 0.068 0.932 13 O -0.578 6.578 14 C -0.517 4.517 15 H 0.081 0.919 16 C 0.091 3.909 17 N -0.883 5.883 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.301 1.301 21 H -0.272 1.272 22 H 0.136 0.864 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.366 0.634 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -12.211 1.061 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.656 3.344 3 O -0.869 6.869 4 O -0.957 6.957 5 C -0.742 4.742 6 C -0.046 4.046 7 C -0.182 4.182 8 C -0.087 4.087 9 C -0.158 4.158 10 C 0.028 3.972 11 C 0.143 3.857 12 H 0.085 0.915 13 O -0.386 6.386 14 C -0.555 4.555 15 H 0.100 0.900 16 C -0.114 4.114 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.228 1.228 21 H -0.197 1.197 22 H 0.154 0.846 23 H 0.146 0.854 24 H 0.143 0.857 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.214 0.786 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.581 -11.762 -0.033 12.622 hybrid contribution -0.779 -0.056 1.131 1.374 sum -5.360 -11.817 1.098 13.023 Atomic orbital electron populations 1.30441 1.27727 1.11557 1.11646 1.06061 0.77805 0.75926 0.74587 1.93912 1.75066 1.33283 1.84674 1.93493 1.77540 1.63253 1.61390 1.30313 1.17438 1.05555 1.20890 1.20883 0.92592 0.92758 0.98374 1.21097 1.03772 1.00616 0.92745 1.21340 0.94876 0.94089 0.98401 1.21008 1.00918 0.96145 0.97702 1.20736 0.89888 0.94679 0.91926 1.19480 0.92707 0.88045 0.85448 0.91485 1.86444 1.41014 1.92919 1.18244 1.20947 0.93832 0.90117 1.50575 0.90046 1.24844 0.97546 0.96279 0.92714 1.69910 1.33287 1.01648 1.47190 0.86473 0.85327 0.77186 0.77920 1.20393 1.22833 1.19676 0.84560 0.85399 0.85669 0.84469 0.85913 0.85975 0.85326 0.78552 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -9.11 10.48 101.05 1.06 -8.05 16 2 S 2.48 44.59 5.16 -107.50 -0.55 44.04 16 3 O -0.87 -20.23 14.39 -57.54 -0.83 -21.06 16 4 O -0.96 -17.92 16.75 -57.54 -0.96 -18.89 16 5 C -0.66 -12.05 5.60 -39.59 -0.22 -12.27 16 6 C -0.03 -0.44 9.50 -39.58 -0.38 -0.81 16 7 C -0.16 -2.32 10.05 -39.58 -0.40 -2.71 16 8 C -0.07 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C -0.14 -2.36 9.31 -39.58 -0.37 -2.73 16 10 C 0.03 0.57 4.98 -104.63 -0.52 0.05 16 11 C 0.20 4.53 1.82 -29.03 -0.05 4.48 16 12 H 0.07 1.49 3.10 -51.93 -0.16 1.33 16 13 O -0.58 -12.27 10.74 -35.23 -0.38 -12.65 16 14 C -0.52 -14.20 7.06 -34.44 -0.24 -14.44 16 15 H 0.08 2.49 7.98 -52.49 -0.42 2.07 16 16 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 17 N -0.88 -26.97 13.96 55.43 0.77 -26.20 16 18 Si 0.90 22.58 26.19 -169.99 -4.45 18.12 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.09 16 22 H 0.14 2.03 5.82 -51.92 -0.30 1.73 16 23 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.12 1.35 8.14 -51.92 -0.42 0.93 16 25 H 0.14 1.97 7.23 -52.48 -0.38 1.59 16 26 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.93 6.43 -52.49 -0.34 1.59 16 29 H 0.37 6.64 7.31 45.56 0.33 6.98 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 260.83 15.07 3.93 3.93 Total: -1.00 -35.21 260.83 -6.21 -41.42 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.12 Total: 6.65 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: -1.62 Total: -35.36 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.77 Total: -26.20 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.17 Total: -52.60 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.45 Total: 18.12 kcal Atomic # 16 Polarization: 44.59 SS G_CDS: -0.55 Total: 44.04 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.21 -6.21 -41.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536212030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.794 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds