Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 110.54318 * 2 1 4 4 O 1.42095 * 110.54289 * 223.24789 * 2 1 3 5 5 C 1.76199 * 104.45006 * 111.62038 * 2 1 3 6 6 C 1.38256 * 119.99963 * 111.15873 * 5 2 1 7 7 C 1.38215 * 120.00468 * 180.02562 * 6 5 2 8 8 C 1.38258 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.38220 * 120.00081 * 359.74433 * 8 7 6 10 10 C 1.38208 * 120.00442 * 291.13709 * 5 2 1 11 11 C 1.50700 * 119.99833 * 0.02562 * 10 5 2 12 12 H 1.09004 * 109.46829 * 33.27026 * 11 10 5 13 13 O 1.42903 * 109.47353 * 153.26480 * 11 10 5 14 14 C 1.50701 * 109.47190 * 273.26910 * 11 10 5 15 15 H 1.07994 * 120.00005 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99634 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99635 * 179.97438 * 16 14 11 18 18 Si 1.86796 * 120.00063 * 359.72388 * 16 14 11 19 19 H 1.48494 * 109.47285 * 90.00535 * 18 16 14 20 20 H 1.48510 * 109.46633 * 210.00048 * 18 16 14 21 21 H 1.48493 * 109.47205 * 329.99724 * 18 16 14 22 22 H 1.09000 * 109.47348 * 314.58550 * 1 2 3 23 23 H 1.08994 * 109.47468 * 74.58519 * 1 2 3 24 24 H 1.09000 * 109.46928 * 194.58995 * 1 2 3 25 25 H 1.08004 * 120.00034 * 359.97438 * 6 5 2 26 26 H 1.07994 * 120.00607 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.99908 * 179.97438 * 8 7 6 28 28 H 1.07995 * 120.00071 * 180.27222 * 9 8 7 29 29 H 0.96698 * 113.99743 * 60.00306 * 13 11 10 30 30 H 0.96996 * 120.00199 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6287 1.5862 6 6 2.8447 -1.8736 1.6968 7 6 3.1891 -2.3671 2.9411 8 6 2.9431 -1.6155 4.0751 9 6 2.3576 -0.3684 3.9641 10 6 2.0082 0.1228 2.7198 11 6 1.3639 1.4798 2.5993 12 1 0.6636 1.4766 1.7640 13 8 0.6631 1.7834 3.8071 14 6 2.4267 2.5211 2.3599 15 1 3.4649 2.2294 2.3012 16 6 2.0735 3.8461 2.2156 17 7 3.0011 4.7548 2.0071 18 14 0.2771 4.3494 2.3093 19 1 -0.0754 4.6664 3.7165 20 1 0.0541 5.5479 1.4612 21 1 -0.5753 3.2344 1.8244 22 1 -0.3634 0.7214 0.7319 23 1 -0.3634 0.2731 -0.9906 24 1 -0.3633 -0.9945 0.2589 25 1 3.0365 -2.4610 0.8110 26 1 3.6504 -3.3398 3.0276 27 1 3.2119 -2.0012 5.0474 28 1 2.1694 0.2206 4.8495 29 1 1.2253 1.8034 4.5936 30 1 2.7527 5.6869 1.9052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536212030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -103.538733 kcal Electronic energy + Delta-G solvation = -17736.185360 eV Core-core repulsion = 14816.586065 eV Total energy + Delta-G solvation = -2919.599296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52376 -38.20801 -37.47299 -36.78264 -34.37387 -32.78886 -31.92519 -30.37157 -28.98969 -25.02825 -24.04940 -22.15046 -20.01275 -19.52495 -18.60220 -17.39860 -17.17389 -16.96322 -16.72571 -15.81483 -15.70491 -15.30546 -15.05214 -14.80204 -14.20852 -13.96602 -13.88815 -13.63728 -13.19897 -12.95221 -12.93088 -12.88091 -12.67741 -12.38533 -11.94839 -11.83698 -11.53089 -11.17155 -10.74900 -10.72309 -10.19905 -9.64491 -8.23821 -6.32605 -0.75669 -0.01918 0.43039 1.40535 1.44430 1.54997 2.02208 2.41718 2.58835 3.01445 3.06839 3.42234 3.68283 3.87123 3.93454 4.04196 4.13187 4.21545 4.42883 4.54348 4.75414 4.84518 4.94248 5.07151 5.25574 5.39807 5.45605 5.55811 5.99555 6.16588 6.71157 7.02223 7.36730 8.92694 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.011143 C = 0.008883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.719656 B = 2512.127706 C = 3151.307797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.472 3.528 3 O -0.942 6.942 4 O -0.976 6.976 5 C -0.668 4.668 6 C -0.040 4.040 7 C -0.152 4.152 8 C -0.062 4.062 9 C -0.152 4.152 10 C -0.006 4.006 11 C 0.206 3.794 12 H 0.073 0.927 13 O -0.576 6.576 14 C -0.506 4.506 15 H 0.031 0.969 16 C 0.030 3.970 17 N -0.940 5.940 18 Si 0.954 3.046 19 H -0.268 1.268 20 H -0.304 1.304 21 H -0.249 1.249 22 H 0.131 0.869 23 H 0.159 0.841 24 H 0.163 0.837 25 H 0.151 0.849 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.142 0.858 29 H 0.379 0.621 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -15.018 2.124 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.656 3.344 3 O -0.939 6.939 4 O -0.973 6.973 5 C -0.755 4.755 6 C -0.059 4.059 7 C -0.170 4.170 8 C -0.080 4.080 9 C -0.170 4.170 10 C -0.008 4.008 11 C 0.148 3.852 12 H 0.090 0.910 13 O -0.385 6.385 14 C -0.544 4.544 15 H 0.049 0.951 16 C -0.169 4.169 17 N -0.581 5.581 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.232 1.232 21 H -0.173 1.173 22 H 0.149 0.851 23 H 0.177 0.823 24 H 0.181 0.819 25 H 0.169 0.831 26 H 0.182 0.818 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.229 0.771 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.500 -14.587 1.042 16.003 hybrid contribution -0.115 0.614 0.825 1.035 sum -6.615 -13.972 1.867 15.571 Atomic orbital electron populations 1.30233 1.21736 1.13915 1.13568 1.05725 0.80025 0.74270 0.74380 1.93842 1.78128 1.36317 1.85633 1.93460 1.79327 1.62696 1.61854 1.30246 1.18544 1.06577 1.20171 1.21214 0.92433 0.92151 1.00112 1.21632 1.01759 1.01942 0.91685 1.21811 0.92976 0.92686 1.00493 1.21315 1.01003 0.97628 0.97080 1.20503 0.92568 0.93960 0.93752 1.19196 0.91590 0.88525 0.85893 0.90989 1.86358 1.40811 1.92996 1.18322 1.21089 0.93091 0.91454 1.48753 0.95072 1.25706 1.01728 0.96533 0.92903 1.70064 1.35592 1.02046 1.50383 0.85605 0.80616 0.77305 0.78401 1.19282 1.23156 1.17292 0.85112 0.82327 0.81884 0.83115 0.81826 0.81828 0.84070 0.77102 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -15.67 10.48 113.37 1.19 -14.48 16 2 S 2.47 88.52 5.16 -56.49 -0.29 88.23 16 3 O -0.94 -45.69 14.39 -127.65 -1.84 -47.53 16 4 O -0.98 -36.07 16.75 -127.65 -2.14 -38.21 16 5 C -0.67 -23.98 5.60 22.27 0.12 -23.85 16 6 C -0.04 -1.20 9.50 22.27 0.21 -0.99 16 7 C -0.15 -3.68 10.05 22.27 0.22 -3.46 16 8 C -0.06 -1.53 10.05 22.27 0.22 -1.31 16 9 C -0.15 -4.83 9.31 22.27 0.21 -4.62 16 10 C -0.01 -0.25 4.98 -19.87 -0.10 -0.35 16 11 C 0.21 9.25 1.82 29.10 0.05 9.30 16 12 H 0.07 3.14 3.10 -2.38 -0.01 3.13 16 13 O -0.58 -23.54 10.74 -148.98 -1.60 -25.14 16 14 C -0.51 -28.85 7.06 25.60 0.18 -28.67 16 15 H 0.03 2.03 7.98 -2.91 -0.02 2.01 16 16 C 0.03 1.79 5.47 84.66 0.46 2.25 16 17 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.95 46.59 26.19 68.60 1.80 48.39 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 21 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 22 H 0.13 3.52 5.82 -2.39 -0.01 3.51 16 23 H 0.16 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.15 3.99 7.23 -2.91 -0.02 3.96 16 26 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 27 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.14 3.95 6.43 -2.91 -0.02 3.93 16 29 H 0.38 13.26 7.31 -74.06 -0.54 12.72 16 30 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -81.06 260.83 -0.41 -81.47 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.58 Total: 19.02 kcal Atomic # 6 Polarization: -68.95 SS G_CDS: 2.78 Total: -66.17 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.30 Total: -60.05 kcal Atomic # 8 Polarization: -105.31 SS G_CDS: -5.58 Total: -110.88 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.80 Total: 48.39 kcal Atomic # 16 Polarization: 88.52 SS G_CDS: -0.29 Total: 88.23 kcal Total: -81.06 -0.41 -81.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536212030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.065 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds