Wall clock time and date at job start Mon Mar 30 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.53010 * 109.47303 * 293.80323 * 15 14 13 17 17 C 1.50702 * 109.47107 * 179.97438 * 16 15 14 18 18 O 1.20829 * 119.99958 * 0.02562 * 17 16 15 19 19 O 1.34229 * 119.99903 * 179.97438 * 17 16 15 20 20 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 21 21 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 28 28 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 29 29 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 30 30 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 31 31 H 1.09003 * 109.47316 * 53.80231 * 15 14 13 32 32 H 1.08995 * 109.47173 * 173.80324 * 15 14 13 33 33 H 1.08996 * 109.46468 * 300.00100 * 16 15 14 34 34 H 1.09002 * 109.46771 * 59.99613 * 16 15 14 35 35 H 0.96690 * 117.00096 * 180.02562 * 19 17 16 36 36 H 1.08999 * 109.48998 * 299.35229 * 20 14 13 37 37 H 1.09002 * 109.48626 * 179.28754 * 20 14 13 38 38 H 1.09001 * 109.48531 * 303.15255 * 21 11 10 39 39 H 1.09000 * 109.48854 * 63.21719 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1270 -8.8168 0.9098 16 6 -0.4265 -9.0930 2.3092 17 6 -1.1806 -10.3978 2.3026 18 8 -1.2661 -11.0410 1.2833 19 8 -1.7564 -10.8459 3.4293 20 6 1.6048 -7.3594 -0.3380 21 6 2.4174 -6.0649 -0.2600 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.8718 -3.6005 -0.9002 26 1 2.8717 -3.6084 0.8798 27 1 1.4682 -5.1797 2.0700 28 1 0.0938 -4.2759 1.3889 29 1 -0.7649 -6.3431 0.3437 30 1 -0.5748 -6.5684 2.0995 31 1 -0.6968 -8.7572 0.1985 32 1 0.8000 -9.6235 0.6195 33 1 0.3973 -9.1526 3.0204 34 1 -1.0996 -8.2862 2.5995 35 1 -2.2288 -11.6878 3.3760 36 1 0.9039 -7.2992 -1.1706 37 1 2.2783 -8.2030 -0.4895 38 1 2.9469 -5.9105 -1.2002 39 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035687341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:13 Heat of formation + Delta-G solvation = -90.234817 kcal Electronic energy + Delta-G solvation = -19010.999920 eV Core-core repulsion = 15953.183594 eV Total energy + Delta-G solvation = -3057.816325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56604 -39.08174 -36.56279 -35.81738 -33.17500 -31.80825 -30.65348 -29.51811 -26.54048 -24.18766 -23.53102 -22.95102 -20.83182 -20.31684 -19.45801 -18.42128 -17.06322 -16.47981 -16.40524 -15.43512 -15.01652 -14.68480 -14.54253 -14.50079 -14.02238 -13.78022 -13.44671 -13.05796 -12.62630 -12.27363 -12.08632 -11.87385 -11.73145 -11.43505 -11.18716 -11.04423 -10.91192 -10.85775 -10.75193 -10.52461 -10.43789 -9.82003 -9.33790 -9.12612 -8.40274 -8.32107 -7.71048 -5.99140 -4.01472 1.91476 2.68100 3.33874 3.38248 3.40591 3.95315 4.37582 4.51066 4.55082 4.73679 5.02123 5.09228 5.25602 5.33207 5.36496 5.40954 5.54390 5.57377 5.68270 5.70884 5.75608 5.94442 6.12451 6.17898 6.19788 6.29861 6.41424 6.51133 6.94859 6.97067 7.02785 7.51259 7.57850 7.58709 7.80096 7.90201 8.08713 8.44138 9.05551 9.62059 11.12209 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.044925 B = 0.003361 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.114221 B = 8329.697454 C = 8725.280472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.057 3.943 13 C 0.052 3.948 14 N -0.541 5.541 15 C 0.067 3.933 16 C -0.113 4.113 17 C 0.482 3.518 18 O -0.519 6.519 19 O -0.518 6.518 20 C 0.061 3.939 21 C 0.056 3.944 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.020 0.980 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -19.625 5.092 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.071 4.071 13 C -0.075 4.075 14 N -0.266 5.266 15 C -0.062 4.062 16 C -0.151 4.151 17 C 0.324 3.676 18 O -0.407 6.407 19 O -0.330 6.330 20 C -0.066 4.066 21 C -0.073 4.073 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.941 -19.295 4.822 19.911 hybrid contribution 0.115 0.375 -0.009 0.392 sum -0.825 -18.920 4.813 19.540 Atomic orbital electron populations 1.69962 1.06020 1.26677 1.50614 1.24992 0.94836 0.99166 0.95307 0.86655 0.79572 0.83144 0.78592 1.20247 1.21288 1.20286 1.21166 0.92956 0.91092 1.50942 0.92853 1.19083 0.93969 0.90108 0.97701 1.22318 0.96723 0.88256 0.98991 1.62264 1.27708 1.02578 1.34053 1.22154 0.97529 0.96567 0.90850 1.22311 0.94314 0.90158 1.00754 1.62129 1.27487 1.01567 1.35444 1.21817 0.97663 0.92737 0.93940 1.21362 1.00752 0.91821 1.01127 1.23546 0.76128 0.87620 0.80295 1.90735 1.57925 1.58284 1.33754 1.84549 1.65955 1.43519 1.38958 1.22138 0.96902 0.97719 0.89880 1.22118 0.94193 0.90180 1.00785 0.92952 0.96520 0.95808 0.92126 0.96122 0.94624 0.89104 0.93738 0.90572 0.93733 0.89969 0.86657 0.87339 0.73192 0.93839 0.90701 0.90593 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 10 C 0.06 1.35 4.90 -3.83 -0.02 1.33 16 11 N -0.54 -9.83 4.71 -234.47 -1.10 -10.94 16 12 C 0.06 0.96 5.41 -3.77 -0.02 0.94 16 13 C 0.05 0.70 5.41 -3.76 -0.02 0.68 16 14 N -0.54 -6.69 4.71 -234.47 -1.10 -7.80 16 15 C 0.07 0.70 4.25 -3.82 -0.02 0.69 16 16 C -0.11 -0.97 5.75 -27.88 -0.16 -1.13 16 17 C 0.48 4.49 8.33 36.01 0.30 4.79 16 18 O -0.52 -6.46 16.74 -18.75 -0.31 -6.77 16 19 O -0.52 -3.66 13.42 -39.25 -0.53 -4.18 16 20 C 0.06 0.79 5.61 -3.77 -0.02 0.77 16 21 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.68 6.34 -51.93 -0.33 1.35 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.85 6.34 -51.93 -0.33 0.53 16 31 H 0.04 0.51 8.08 -51.93 -0.42 0.10 16 32 H 0.08 0.86 7.98 -51.93 -0.41 0.44 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.85 6.49 -51.93 -0.34 0.51 16 35 H 0.41 1.21 9.10 45.56 0.41 1.62 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -32.67 316.48 -8.60 -41.26 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.51 Total: -2.81 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.53 Total: -4.06 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.47 Total: -44.84 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.84 Total: -10.95 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.67 -8.60 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035687341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.971 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds