Wall clock time and date at job start Mon Mar 30 2020 05:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47199 * 2 1 4 4 N 1.46499 * 109.47509 * 120.00009 * 2 1 3 5 5 C 1.46503 * 119.99931 * 123.57658 * 4 2 1 6 6 C 1.50700 * 109.47091 * 270.00089 * 5 4 2 7 7 H 1.08001 * 120.00279 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00154 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99900 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00181 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46825 * 269.99812 * 10 8 6 12 12 H 1.48502 * 109.47311 * 29.99781 * 10 8 6 13 13 H 1.48494 * 109.47173 * 150.00010 * 10 8 6 14 14 C 1.34771 * 119.99976 * 303.57609 * 4 2 1 15 15 O 1.21283 * 120.00353 * 354.45019 * 14 4 2 16 16 C 1.50705 * 119.99947 * 174.44707 * 14 4 2 17 17 H 1.08996 * 110.59211 * 322.96387 * 16 14 4 18 18 C 1.54936 * 110.66659 * 85.96845 * 16 14 4 19 19 C 1.54599 * 102.92030 * 155.84993 * 18 16 14 20 20 H 1.08996 * 110.30870 * 96.95957 * 19 18 16 21 21 O 1.42901 * 110.30536 * 219.12824 * 19 18 16 22 22 C 1.53993 * 105.14057 * 338.04194 * 19 18 16 23 23 N 1.47904 * 107.05583 * 358.77393 * 22 19 18 24 24 H 1.09006 * 109.47285 * 295.46885 * 1 2 3 25 25 H 1.08995 * 109.47639 * 55.47473 * 1 2 3 26 26 H 1.09006 * 109.47492 * 175.47751 * 1 2 3 27 27 H 1.09005 * 109.47042 * 240.00495 * 2 1 3 28 28 H 1.09002 * 109.47460 * 184.80559 * 3 2 1 29 29 H 1.09010 * 109.46995 * 304.80646 * 3 2 1 30 30 H 1.08998 * 109.47055 * 64.80163 * 3 2 1 31 31 H 1.08996 * 109.46959 * 150.00361 * 5 4 2 32 32 H 1.09001 * 109.47245 * 29.99871 * 5 4 2 33 33 H 0.96999 * 119.99695 * 0.02562 * 9 8 6 34 34 H 1.08997 * 110.72389 * 274.20383 * 18 16 14 35 35 H 1.08997 * 110.72203 * 37.31506 * 18 16 14 36 36 H 0.96705 * 113.99735 * 180.02562 * 21 19 18 37 37 H 1.08995 * 109.91691 * 118.12532 * 22 19 18 38 38 H 1.08997 * 109.91620 * 239.22979 * 22 19 18 39 39 H 1.00899 * 111.00478 * 264.81241 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9241 -1.8344 1.0631 6 6 2.1187 -3.1044 0.9663 7 1 1.0400 -3.0637 1.0009 8 6 2.7588 -4.3184 0.8347 9 7 4.0724 -4.3680 0.7930 10 14 1.7604 -5.8926 0.7140 11 1 1.5341 -6.4407 2.0755 12 1 0.4525 -5.6014 0.0738 13 1 2.5010 -6.8870 -0.1031 14 6 1.6345 -0.2737 2.4189 15 8 0.9671 0.7324 2.5348 16 6 2.0343 -1.0577 3.6423 17 1 2.0156 -2.1276 3.4350 18 6 3.4360 -0.6211 4.1375 19 6 3.4092 -1.0064 5.6345 20 1 3.8850 -1.9755 5.7843 21 8 4.0638 -0.0050 6.4161 22 6 1.9160 -1.0813 6.0038 23 7 1.1504 -0.7268 4.7891 24 1 -0.3634 0.4419 0.9278 25 1 -0.3634 0.5824 -0.8466 26 1 -0.3634 -1.0245 -0.0810 27 1 1.8933 -0.5138 -0.8901 28 1 3.1266 1.4437 -0.0861 29 1 1.6080 1.9806 -0.8439 30 1 1.7486 1.9309 0.9299 31 1 3.5772 -1.8839 1.9343 32 1 3.5274 -1.7173 0.1628 33 1 4.5908 -3.5506 0.8553 34 1 4.2185 -1.1688 3.6123 35 1 3.5707 0.4536 4.0154 36 1 4.0782 -0.1934 7.3645 37 1 1.6622 -2.0928 6.3207 38 1 1.6957 -0.3752 6.8044 39 1 0.9075 0.2526 4.7876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036136034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:25 Heat of formation + Delta-G solvation = -112.348078 kcal Electronic energy + Delta-G solvation = -20543.183294 eV Core-core repulsion = 17484.408066 eV Total energy + Delta-G solvation = -3058.775228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56690 -39.57500 -37.27991 -36.41099 -35.24945 -33.29749 -30.61988 -29.44459 -28.40700 -28.11140 -25.20447 -24.36831 -22.41754 -21.94938 -20.12847 -19.30611 -18.24684 -17.76982 -17.41403 -16.64347 -16.45677 -15.97183 -15.62604 -15.03991 -14.85733 -14.69058 -14.42561 -14.10602 -14.02157 -13.84829 -13.46507 -13.41480 -13.01838 -12.71906 -12.68299 -12.64766 -12.49336 -12.21935 -12.07491 -11.95874 -11.81937 -11.23815 -11.16415 -10.59409 -10.45325 -9.68482 -9.48379 -8.62448 -6.41013 1.52846 1.57424 1.61392 1.80038 2.13235 2.54785 3.04960 3.13554 3.21500 3.50312 3.69242 3.76449 3.98235 4.06074 4.16653 4.26848 4.30422 4.42314 4.53916 4.59037 4.69326 4.72550 4.83620 4.85435 4.86760 4.89692 4.93424 4.96981 5.21514 5.32534 5.53093 5.78129 5.82347 6.11337 6.22983 6.48857 6.62436 6.82321 7.20382 7.37321 8.72164 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.009142 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.656742 B = 3062.090159 C = 4265.438567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.588 5.588 5 C 0.236 3.764 6 C -0.616 4.616 7 H 0.043 0.957 8 C -0.016 4.016 9 N -0.927 5.927 10 Si 1.109 2.891 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.523 3.477 15 O -0.572 6.572 16 C 0.060 3.940 17 H 0.106 0.894 18 C -0.133 4.133 19 C 0.084 3.916 20 H 0.081 0.919 21 O -0.576 6.576 22 C 0.016 3.984 23 N -0.661 5.661 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 6.203 6.778 9.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.212 4.212 4 N -0.318 5.318 5 C 0.114 3.886 6 C -0.654 4.654 7 H 0.062 0.938 8 C -0.216 4.216 9 N -0.563 5.563 10 Si 0.932 3.068 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.453 6.453 16 C -0.053 4.053 17 H 0.124 0.876 18 C -0.173 4.173 19 C 0.023 3.977 20 H 0.099 0.901 21 O -0.385 6.385 22 C -0.114 4.114 23 N -0.292 5.292 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.568 4.770 6.044 8.117 hybrid contribution 0.734 1.877 0.421 2.059 sum -1.834 6.646 6.465 9.452 Atomic orbital electron populations 1.22058 0.94732 1.01332 1.03213 1.21115 0.95038 0.93398 0.87126 1.22103 1.00575 0.95257 1.03306 1.48087 1.46925 1.31479 1.05330 1.19310 0.89066 0.83686 0.96531 1.22488 0.94391 0.93261 1.55305 0.93841 1.26964 0.97085 1.04913 0.92660 1.70910 1.06231 1.31566 1.47616 0.82990 0.73862 0.72167 0.77745 1.19857 1.20394 1.20778 1.20374 0.79102 0.84344 0.85044 1.90506 1.41398 1.26656 1.86752 1.22595 0.91537 1.00985 0.90145 0.87632 1.22923 0.96757 1.01817 0.95797 1.22988 0.93379 0.91583 0.89721 0.90119 1.86500 1.79939 1.47977 1.24068 1.23619 0.90894 1.03738 0.93147 1.62714 1.38890 1.26673 1.00879 0.92306 0.89574 0.94177 0.90083 0.93186 0.89570 0.92394 0.95397 0.96717 0.92989 0.90362 0.91412 0.74992 0.88856 0.88404 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.13 71.98 0.66 -4.83 16 2 C 0.14 5.07 3.27 44.99 0.15 5.21 16 3 C -0.15 -4.95 9.23 71.98 0.66 -4.29 16 4 N -0.59 -24.90 2.41 -802.15 -1.93 -26.83 16 5 C 0.24 11.09 4.05 85.63 0.35 11.43 16 6 C -0.62 -32.04 8.65 25.60 0.22 -31.82 16 7 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 8 C -0.02 -0.84 5.46 84.65 0.46 -0.38 16 9 N -0.93 -51.79 13.65 21.45 0.29 -51.50 16 10 Si 1.11 47.68 29.90 68.60 2.05 49.74 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.52 21.87 6.35 87.66 0.56 22.43 16 15 O -0.57 -24.64 12.06 -3.04 -0.04 -24.67 16 16 C 0.06 2.29 2.70 44.52 0.12 2.41 16 17 H 0.11 4.59 6.73 -2.39 -0.02 4.58 16 18 C -0.13 -4.53 5.89 31.80 0.19 -4.34 16 19 C 0.08 2.23 4.36 31.47 0.14 2.37 16 20 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 21 O -0.58 -13.79 13.25 -148.98 -1.97 -15.76 16 22 C 0.02 0.40 7.33 86.45 0.63 1.03 16 23 N -0.66 -22.18 7.27 -484.15 -3.52 -25.70 16 24 H 0.06 2.28 5.98 -2.38 -0.01 2.26 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.08 3.02 7.82 -2.38 -0.02 3.00 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 30 H 0.06 2.07 6.14 -2.39 -0.01 2.06 16 31 H 0.03 1.33 5.18 -2.39 -0.01 1.32 16 32 H 0.01 0.73 7.82 -2.39 -0.02 0.71 16 33 H 0.26 14.49 7.22 -92.71 -0.67 13.82 16 34 H 0.08 2.78 6.82 -2.39 -0.02 2.77 16 35 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 36 H 0.40 5.21 9.12 -74.05 -0.68 4.53 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.00 7.96 -2.39 -0.02 1.98 16 39 H 0.35 11.81 7.75 -89.69 -0.70 11.12 16 Total: -1.00 -62.15 309.49 -1.19 -63.34 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.21 Total: 32.17 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 4.13 Total: -0.77 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.16 Total: -104.04 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -2.01 Total: -40.44 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.05 Total: 49.74 kcal Total: -62.15 -1.19 -63.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036136034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.004 kcal (2) G-P(sol) polarization free energy of solvation -62.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds