Wall clock time and date at job start Mon Mar 30 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47221 * 2 1 4 4 N 1.46505 * 109.46983 * 119.99469 * 2 1 3 5 5 C 1.46500 * 119.99832 * 120.22430 * 4 2 1 6 6 C 1.50700 * 109.47432 * 264.08413 * 5 4 2 7 7 H 1.07998 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99750 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00180 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99429 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46783 * 90.00454 * 10 8 6 12 12 H 1.48497 * 109.46874 * 209.99902 * 10 8 6 13 13 H 1.48492 * 109.47304 * 330.00459 * 10 8 6 14 14 C 1.34773 * 120.00310 * 300.23352 * 4 2 1 15 15 O 1.21280 * 119.99715 * 3.91943 * 14 4 2 16 16 C 1.50700 * 120.00232 * 183.92551 * 14 4 2 17 17 H 1.09001 * 109.50242 * 311.77464 * 16 14 4 18 18 C 1.53096 * 109.50464 * 71.86072 * 16 14 4 19 19 N 1.47022 * 109.25625 * 176.82881 * 18 16 14 20 20 C 1.47017 * 110.75015 * 301.38471 * 19 18 16 21 21 C 1.53098 * 109.25729 * 58.61763 * 20 19 18 22 22 O 1.43012 * 109.54205 * 191.66459 * 16 14 4 23 23 H 1.09002 * 109.46744 * 306.23778 * 1 2 3 24 24 H 1.08996 * 109.46775 * 66.23165 * 1 2 3 25 25 H 1.09001 * 109.46871 * 186.23481 * 1 2 3 26 26 H 1.08995 * 109.47220 * 239.99697 * 2 1 3 27 27 H 1.08996 * 109.46719 * 183.17086 * 3 2 1 28 28 H 1.09004 * 109.46685 * 303.16858 * 3 2 1 29 29 H 1.08995 * 109.47043 * 63.17185 * 3 2 1 30 30 H 1.09004 * 109.47178 * 24.08613 * 5 4 2 31 31 H 1.08997 * 109.47255 * 144.08166 * 5 4 2 32 32 H 0.97006 * 119.99693 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.51200 * 56.89596 * 18 16 14 34 34 H 1.09001 * 109.54550 * 296.78083 * 18 16 14 35 35 H 1.00905 * 111.00043 * 65.15951 * 19 18 16 36 36 H 1.08997 * 109.50308 * 178.54932 * 20 19 18 37 37 H 1.09001 * 109.50366 * 298.68029 * 20 19 18 38 38 H 1.09000 * 109.50237 * 183.21516 * 21 20 19 39 39 H 1.08993 * 109.54634 * 63.10951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.8647 -1.8788 1.0620 6 6 2.0111 -3.1170 1.1586 7 1 0.9448 -3.0277 1.3049 8 6 2.5914 -4.3638 1.0590 9 7 3.8898 -4.4724 0.8803 10 14 1.5332 -5.8986 1.1781 11 1 1.0639 -6.2825 -0.1775 12 1 2.3331 -7.0075 1.7575 13 1 0.3616 -5.6258 2.0487 14 6 1.6889 -0.2328 2.4203 15 8 0.9310 0.7074 2.5324 16 6 2.2624 -0.8890 3.6498 17 1 2.1494 -1.9703 3.5714 18 6 3.7475 -0.5376 3.7711 19 7 4.2831 -1.1172 5.0116 20 6 3.5487 -0.6135 6.1814 21 6 2.0655 -0.9642 6.0358 22 8 1.5702 -0.4193 4.8097 23 1 -0.3633 0.6075 0.8289 24 1 -0.3633 0.4142 -0.9405 25 1 -0.3633 -1.0216 0.1116 26 1 1.8934 -0.5138 -0.8899 27 1 3.1286 1.4430 -0.0568 28 1 1.6311 1.9725 -0.8603 29 1 1.7239 1.9397 0.9170 30 1 3.3680 -1.8590 0.0953 31 1 3.6084 -1.8871 1.8587 32 1 4.2980 -5.3496 0.8107 33 1 3.8645 0.5458 3.7955 34 1 4.2892 -0.9431 2.9165 35 1 4.2622 -2.1255 4.9782 36 1 3.9447 -1.0749 7.0860 37 1 3.6625 0.4687 6.2442 38 1 1.5082 -0.5432 6.8726 39 1 1.9461 -2.0475 6.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043708158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:41 Heat of formation + Delta-G solvation = -76.495631 kcal Electronic energy + Delta-G solvation = -20774.691002 eV Core-core repulsion = 17717.470452 eV Total energy + Delta-G solvation = -3057.220550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02413 -38.39222 -35.38798 -34.15762 -33.38109 -32.02482 -30.40472 -27.10185 -26.62827 -26.15098 -24.13071 -22.87924 -21.79962 -20.84731 -18.33151 -16.81976 -16.26035 -16.11818 -16.00476 -15.28503 -14.77358 -14.66631 -14.55635 -14.13471 -13.64866 -13.03314 -12.80236 -12.51011 -12.43369 -12.27484 -11.85503 -11.73184 -11.55285 -11.29056 -11.13042 -11.02407 -10.96351 -10.70918 -10.67583 -10.39534 -10.15949 -9.88295 -9.74131 -8.81710 -8.61601 -8.02887 -7.72803 -6.25463 -4.33181 3.17473 3.24387 3.25632 3.32956 3.51399 4.24358 4.35263 4.46608 4.96952 5.05180 5.15593 5.24154 5.39984 5.44894 5.49421 5.60090 5.69328 5.78780 5.82735 5.96082 5.99981 6.08482 6.18606 6.25773 6.33654 6.45175 6.72287 6.76040 6.85342 6.97391 7.11270 7.34527 7.43940 7.58753 7.71116 7.98556 8.29207 8.73928 9.01639 9.35181 10.80497 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.010112 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.412002 B = 2768.235480 C = 3993.065544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 C -0.167 4.167 4 N -0.590 5.590 5 C 0.228 3.772 6 C -0.541 4.541 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.888 5.888 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.533 3.467 15 O -0.550 6.550 16 C 0.036 3.964 17 H 0.101 0.899 18 C 0.033 3.967 19 N -0.679 5.679 20 C 0.019 3.981 21 C 0.021 3.979 22 O -0.359 6.359 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.347 0.653 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 5.402 4.586 7.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C -0.225 4.225 4 N -0.323 5.323 5 C 0.108 3.892 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.319 3.681 15 O -0.429 6.429 16 C -0.026 4.026 17 H 0.118 0.882 18 C -0.097 4.097 19 N -0.307 5.307 20 C -0.111 4.111 21 C -0.058 4.058 22 O -0.277 6.277 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.165 0.835 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.202 6.344 4.653 7.870 hybrid contribution -1.137 -1.881 -0.086 2.199 sum -0.936 4.464 4.567 6.454 Atomic orbital electron populations 1.22182 0.95625 1.02628 1.01859 1.20859 0.94327 0.92312 0.87879 1.22196 1.00587 0.96854 1.02829 1.48216 1.50805 1.29466 1.03774 1.19683 0.89855 0.80811 0.98826 1.21519 0.94696 0.90488 1.51222 0.92094 1.24930 0.95006 0.99060 0.94675 1.69913 1.09500 1.24627 1.48575 0.86549 0.80366 0.82374 0.78568 1.20424 1.20991 1.19804 1.19698 0.81110 0.83197 0.84110 1.90548 1.36181 1.29447 1.86694 1.22715 0.93657 1.00414 0.85833 0.88176 1.22703 0.91999 1.01146 0.93884 1.60903 1.54690 1.13241 1.01912 1.22682 0.92035 1.01973 0.94382 1.23290 0.96215 0.98449 0.87832 1.88112 1.57390 1.69164 1.13002 0.90759 0.93043 0.92451 0.89773 0.93072 0.92480 0.90903 0.94307 0.93946 0.92429 0.90345 0.87677 0.83503 0.89833 0.90112 0.88534 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.00 37.16 0.33 -2.64 16 2 C 0.15 2.77 3.28 -67.92 -0.22 2.55 16 3 C -0.17 -2.72 9.17 37.16 0.34 -2.38 16 4 N -0.59 -12.26 2.42 -167.46 -0.41 -12.67 16 5 C 0.23 5.18 4.79 -5.19 -0.02 5.16 16 6 C -0.54 -13.64 8.60 -34.44 -0.30 -13.94 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 10 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.53 11.43 6.35 -10.99 -0.07 11.36 16 15 O -0.55 -12.77 12.83 -14.02 -0.18 -12.95 16 16 C 0.04 0.71 2.39 -27.83 -0.07 0.64 16 17 H 0.10 2.12 6.96 -51.93 -0.36 1.76 16 18 C 0.03 0.56 5.77 -3.71 -0.02 0.54 16 19 N -0.68 -10.25 6.93 -113.49 -0.79 -11.04 16 20 C 0.02 0.25 6.76 -3.71 -0.03 0.23 16 21 C 0.02 0.30 7.01 37.21 0.26 0.56 16 22 O -0.36 -6.93 10.03 -54.81 -0.55 -7.48 16 23 H 0.07 1.46 6.24 -51.93 -0.32 1.14 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.33 6.24 -51.93 -0.32 1.01 16 30 H 0.04 0.93 7.80 -51.93 -0.41 0.52 16 31 H 0.04 0.97 4.43 -51.93 -0.23 0.74 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 1.90 5.61 -51.93 -0.29 1.61 16 35 H 0.35 5.14 8.89 -39.29 -0.35 4.79 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -28.45 308.23 -7.49 -35.93 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.04 Total: 7.49 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.11 Total: 3.68 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.46 Total: -46.45 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.73 Total: -20.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.45 -7.49 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043708158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.563 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds