Wall clock time and date at job start Mon Mar 30 2020 04:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47304 * 239.99751 * 3 2 1 5 5 H 1.48491 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47185 * 119.99895 * 3 2 1 7 7 C 1.37883 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46849 * 179.97438 * 9 7 2 11 11 N 1.46911 * 109.46879 * 180.02562 * 10 9 7 12 12 C 1.44250 * 110.99812 * 293.95233 * 11 10 9 13 13 C 1.54246 * 108.64092 * 219.84891 * 12 11 10 14 14 C 1.46136 * 111.90203 * 281.38083 * 13 12 11 15 15 N 1.48108 * 112.19147 * 60.87002 * 14 13 12 16 16 C 1.46894 * 111.00325 * 156.48879 * 15 14 13 17 17 C 1.50701 * 109.47264 * 66.03971 * 16 15 14 18 18 O 1.20824 * 120.00270 * 0.02562 * 17 16 15 19 19 O 1.34236 * 120.00187 * 179.97438 * 17 16 15 20 20 C 1.44265 * 109.97523 * 279.71706 * 15 14 13 21 21 C 1.48194 * 110.99671 * 62.19182 * 11 10 9 22 22 H 0.96996 * 119.99794 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46893 * 59.99830 * 9 7 2 24 24 H 1.08996 * 109.47012 * 300.00042 * 9 7 2 25 25 H 1.08996 * 109.47683 * 60.00476 * 10 9 7 26 26 H 1.09005 * 109.47228 * 299.99862 * 10 9 7 27 27 H 1.09001 * 109.60634 * 100.09627 * 12 11 10 28 28 H 1.08998 * 109.61066 * 339.59715 * 12 11 10 29 29 H 1.08999 * 108.99103 * 160.75996 * 13 12 11 30 30 H 1.08996 * 108.99661 * 42.00255 * 13 12 11 31 31 H 1.09011 * 108.93841 * 181.56490 * 14 13 12 32 32 H 1.09000 * 108.94033 * 300.16670 * 14 13 12 33 33 H 1.08994 * 109.47152 * 186.04283 * 16 15 14 34 34 H 1.09004 * 109.47146 * 306.04471 * 16 15 14 35 35 H 0.96691 * 117.00430 * 180.02562 * 19 17 16 36 36 H 1.08993 * 108.86680 * 333.10661 * 20 15 14 37 37 H 1.08994 * 108.78253 * 214.63728 * 20 15 14 38 38 H 1.09003 * 108.82684 * 312.52933 * 21 11 10 39 39 H 1.09002 * 108.82807 * 70.94640 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9344 -0.0001 12 6 0.7784 -5.1090 1.2303 13 6 0.8868 -6.5855 1.6633 14 6 -0.0228 -7.4435 0.9072 15 7 0.2636 -7.4195 -0.5457 16 6 -0.2339 -8.6366 -1.2006 17 6 -1.7391 -8.6645 -1.1323 18 8 -2.3362 -7.7627 -0.5937 19 8 -2.4166 -9.6907 -1.6706 20 6 -0.3127 -6.2391 -1.1422 21 6 0.6867 -5.0711 -1.2242 22 1 -0.4849 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6045 0.8905 26 1 2.8720 -3.6043 -0.8895 27 1 -0.2686 -4.8498 1.0728 28 1 1.2038 -4.4689 2.0033 29 1 0.6478 -6.6625 2.7240 30 1 1.9098 -6.9271 1.5059 31 1 0.0730 -8.4671 1.2697 32 1 -1.0462 -7.1062 1.0717 33 1 0.0826 -8.6433 -2.2436 34 1 0.1691 -9.5130 -0.6930 35 1 -3.3807 -9.6643 -1.6024 36 1 -1.1714 -5.9272 -0.5478 37 1 -0.6516 -6.4842 -2.1487 38 1 0.1332 -4.1452 -1.3809 39 1 1.3467 -5.2343 -2.0762 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061146547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:21 Heat of formation + Delta-G solvation = -75.424484 kcal Electronic energy + Delta-G solvation = -19925.422566 eV Core-core repulsion = 16868.248465 eV Total energy + Delta-G solvation = -3057.174101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84542 -38.80291 -36.62755 -35.63775 -33.11537 -32.46535 -30.29288 -28.62173 -26.14179 -25.35092 -23.73861 -21.99432 -21.36115 -20.30483 -18.88638 -18.31837 -16.82665 -16.51420 -16.16263 -15.71738 -15.53617 -14.71397 -14.51025 -13.94474 -13.54312 -13.25559 -13.21682 -12.92997 -12.46500 -12.26658 -12.08259 -11.65353 -11.47222 -11.28444 -11.07866 -10.89406 -10.76733 -10.62803 -10.53298 -10.36046 -10.21024 -9.77340 -9.66760 -9.11824 -8.36147 -8.32633 -7.22084 -5.98834 -4.01807 1.99450 2.88087 3.34055 3.38301 3.40933 3.75534 4.45804 4.65602 4.87416 4.98046 5.07000 5.22284 5.34215 5.36241 5.49828 5.59378 5.71597 5.89408 5.97702 6.01959 6.14071 6.27522 6.33674 6.38745 6.46499 6.53177 6.63851 6.80223 6.95464 6.98146 7.11081 7.61940 7.68992 7.70013 7.81597 8.05219 8.09797 8.46386 9.05559 9.62197 11.12057 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.039615 B = 0.004329 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.627308 B = 6466.058840 C = 6733.790209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C -0.010 4.010 10 C 0.062 3.938 11 N -0.543 5.543 12 C 0.070 3.930 13 C -0.114 4.114 14 C 0.053 3.947 15 N -0.488 5.488 16 C 0.063 3.937 17 C 0.439 3.561 18 O -0.511 6.511 19 O -0.523 6.523 20 C 0.052 3.948 21 C 0.066 3.934 22 H 0.260 0.740 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 -19.368 -1.529 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.048 4.048 10 C -0.065 4.065 11 N -0.267 5.267 12 C -0.059 4.059 13 C -0.152 4.152 14 C -0.074 4.074 15 N -0.211 5.211 16 C -0.068 4.068 17 C 0.279 3.721 18 O -0.398 6.398 19 O -0.334 6.334 20 C -0.077 4.077 21 C -0.062 4.062 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.491 -19.350 -1.487 19.464 hybrid contribution -1.824 1.644 0.114 2.458 sum -3.315 -17.707 -1.372 18.066 Atomic orbital electron populations 1.69960 1.06106 1.26667 1.50800 1.25028 0.94815 0.99264 0.95280 0.86656 0.79573 0.83121 0.78645 1.20218 1.21355 1.20219 1.21151 0.93003 0.90989 1.50659 0.92637 1.19692 0.95054 0.92901 0.97168 1.22335 0.96632 0.86682 1.00851 1.60806 1.29881 1.35158 1.00821 1.21643 0.96812 0.94950 0.92535 1.20613 1.01045 0.95961 0.97614 1.21261 0.99340 0.99842 0.86939 1.62086 1.55032 1.00181 1.03783 1.22412 0.83837 0.96779 1.03757 1.25678 0.93633 0.78668 0.74122 1.90754 1.71056 1.36829 1.41205 1.84602 1.26489 1.47977 1.74380 1.22108 0.96441 0.90340 0.98791 1.22437 0.94791 0.95819 0.93195 0.93002 0.96393 0.96721 0.92109 0.92258 0.94790 0.91333 0.91978 0.90525 0.92191 0.93066 0.86386 0.86590 0.73752 0.92324 0.92132 0.93002 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C -0.01 -0.26 4.50 -27.88 -0.13 -0.39 16 10 C 0.06 1.33 5.06 -3.82 -0.02 1.31 16 11 N -0.54 -10.14 4.32 -234.26 -1.01 -11.15 16 12 C 0.07 1.23 4.37 -4.59 -0.02 1.21 16 13 C -0.11 -1.60 5.66 -29.34 -0.17 -1.77 16 14 C 0.05 0.69 4.33 -6.42 -0.03 0.67 16 15 N -0.49 -6.38 4.62 -240.68 -1.11 -7.49 16 16 C 0.06 0.60 5.69 -4.98 -0.03 0.57 16 17 C 0.44 4.69 7.59 36.01 0.27 4.96 16 18 O -0.51 -7.31 13.08 -18.75 -0.25 -7.55 16 19 O -0.52 -4.25 13.42 -39.27 -0.53 -4.78 16 20 C 0.05 0.79 3.78 -4.75 -0.02 0.77 16 21 C 0.07 1.16 5.64 -2.62 -0.01 1.15 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.50 6.20 -51.93 -0.32 0.18 16 24 H 0.01 0.41 7.28 -51.93 -0.38 0.03 16 25 H 0.06 1.29 7.90 -51.93 -0.41 0.88 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.03 0.65 6.96 -51.93 -0.36 0.29 16 28 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 31 H 0.06 0.66 7.71 -51.92 -0.40 0.26 16 32 H 0.05 0.77 5.95 -51.93 -0.31 0.46 16 33 H 0.12 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.12 0.85 7.91 -51.93 -0.41 0.44 16 35 H 0.40 1.86 9.10 45.56 0.41 2.27 16 36 H 0.06 1.02 5.36 -51.93 -0.28 0.74 16 37 H 0.06 0.83 7.36 -51.93 -0.38 0.45 16 38 H 0.05 1.06 5.80 -51.93 -0.30 0.76 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -32.96 302.33 -8.35 -41.31 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.17 Total: -0.06 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.56 Total: -5.11 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.39 Total: -45.24 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.77 Total: -12.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.96 -8.35 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061146547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.114 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds