Wall clock time and date at job start Mon Mar 30 2020 04:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99798 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00147 * 3 2 1 7 7 C 1.38950 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99910 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99730 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46676 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99695 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47323 * 179.97438 * 14 13 12 16 16 H 1.09011 * 109.47072 * 54.99678 * 15 14 13 17 17 C 1.52999 * 109.47157 * 294.99913 * 15 14 13 18 18 C 1.53000 * 109.47354 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46931 * 59.99754 * 18 17 15 20 20 C 1.52999 * 109.47302 * 300.00277 * 19 18 17 21 21 C 1.52994 * 109.47412 * 174.99471 * 15 14 13 22 22 H 1.09006 * 109.46946 * 60.00533 * 21 15 14 23 23 O 1.42899 * 109.47644 * 300.00511 * 21 15 14 24 24 H 0.97001 * 119.99781 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00203 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.46844 * 299.99424 * 12 10 9 27 27 H 1.09002 * 109.47152 * 59.99959 * 12 10 9 28 28 H 1.00902 * 110.99689 * 303.94980 * 13 12 10 29 29 H 1.08998 * 109.46908 * 300.00016 * 14 13 12 30 30 H 1.09001 * 109.47540 * 59.99603 * 14 13 12 31 31 H 1.08994 * 109.47168 * 299.99926 * 17 15 14 32 32 H 1.09005 * 109.47245 * 60.00073 * 17 15 14 33 33 H 1.09001 * 109.47141 * 300.00621 * 18 17 15 34 34 H 1.08997 * 109.47366 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.47016 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.46979 * 60.00477 * 19 18 17 37 37 H 1.08994 * 109.47168 * 299.99605 * 20 19 18 38 38 H 1.09006 * 109.46999 * 179.97438 * 20 19 18 39 39 H 0.96695 * 114.00175 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4981 -7.2708 0.0026 15 6 2.5229 -8.4068 0.0025 16 1 3.2041 -8.2818 0.8443 17 6 3.3171 -8.3771 -1.3049 18 6 4.3424 -9.5127 -1.3048 19 6 3.6175 -10.8542 -1.1787 20 6 2.8233 -10.8840 0.1287 21 6 1.7976 -9.7480 0.1283 22 1 1.1165 -9.8732 -0.7135 23 8 1.0558 -9.7759 1.3494 24 1 -0.4850 -0.8401 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6168 -4.9201 0.8920 27 1 0.6174 -4.9213 -0.8880 28 1 2.8332 -5.9128 -0.7788 29 1 0.8729 -7.3451 0.8924 30 1 0.8734 -7.3455 -0.8875 31 1 2.6360 -8.5021 -2.1466 32 1 3.8339 -7.4215 -1.3944 33 1 5.0234 -9.3873 -0.4630 34 1 4.9079 -9.4918 -2.2363 35 1 4.3479 -11.6633 -1.1791 36 1 2.9365 -10.9797 -2.0205 37 1 3.5043 -10.7586 0.9704 38 1 2.3065 -11.8395 0.2182 39 1 0.5694 -10.5987 1.4954 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:43 Heat of formation + Delta-G solvation = -110.509701 kcal Electronic energy + Delta-G solvation = -19077.654835 eV Core-core repulsion = 16018.959325 eV Total energy + Delta-G solvation = -3058.695510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.55723 -38.30051 -35.94037 -35.27258 -34.13279 -31.43608 -30.89661 -29.81377 -26.94298 -24.66953 -23.54109 -22.44433 -21.11607 -20.02409 -19.56614 -17.86104 -17.43251 -16.58155 -15.61536 -15.49914 -14.89680 -14.60409 -14.33279 -14.10450 -13.82952 -13.56982 -13.35677 -13.25949 -13.00389 -12.47522 -12.01236 -11.75398 -11.61917 -11.54226 -11.16864 -11.12426 -10.90684 -10.83567 -10.50458 -10.27038 -10.17773 -9.92465 -9.82697 -9.50478 -8.44789 -8.03639 -7.97383 -6.71537 -3.84260 3.34305 3.37461 3.58027 3.89889 3.97320 4.13257 4.35966 4.47577 4.57125 4.77199 4.91078 4.98477 5.08246 5.17165 5.21529 5.27538 5.29198 5.30589 5.52668 5.58773 5.72804 5.75853 5.79510 5.86781 5.93558 5.96533 6.02305 6.09493 6.10457 6.19358 6.34640 7.24290 7.47923 7.70892 7.85613 8.12293 8.65008 8.84703 9.52345 9.93153 10.72125 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.046864 B = 0.003476 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.334570 B = 8052.689487 C = 8458.341681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.010 4.010 3 Si 1.092 2.908 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.382 4.382 8 H 0.099 0.901 9 N -0.577 5.577 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.067 3.933 15 C -0.076 4.076 16 H 0.088 0.912 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.150 4.150 21 C 0.111 3.889 22 H 0.052 0.948 23 O -0.563 6.563 24 H 0.261 0.739 25 H 0.376 0.624 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.346 0.654 29 H 0.080 0.920 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -21.512 -2.549 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.212 4.212 3 Si 0.918 3.082 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.511 4.511 8 H 0.116 0.884 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.062 4.062 15 C -0.095 4.095 16 H 0.106 0.894 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.188 4.188 21 C 0.052 3.948 22 H 0.070 0.930 23 O -0.368 6.368 24 H 0.072 0.928 25 H 0.209 0.791 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.167 0.833 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.236 -19.202 -1.815 19.417 hybrid contribution -1.046 -2.405 -0.978 2.799 sum 1.190 -21.607 -2.793 21.820 Atomic orbital electron populations 1.70897 1.06513 1.29376 1.47385 1.26510 0.96558 1.02618 0.95562 0.83128 0.74412 0.73625 0.77053 1.20439 1.20991 1.21053 1.20540 0.94673 0.83913 1.52001 0.88353 1.41936 1.08179 1.05547 1.65840 1.19773 0.88425 0.84504 0.84302 1.90517 1.13705 1.86960 1.54830 1.21663 0.94456 0.91019 1.01060 1.60103 1.18823 1.00040 1.51196 1.21945 0.95245 0.88464 1.00579 1.21118 0.97167 0.92118 0.99119 0.89391 1.21626 0.97823 0.99483 0.96654 1.21556 0.97982 0.94144 1.02171 1.21490 0.99058 0.97782 0.97126 1.22268 0.99146 0.98391 0.99013 1.21812 0.91739 0.94978 0.86274 0.93006 1.86581 1.66626 1.42302 1.41270 0.92771 0.79148 0.89645 0.94118 0.83341 0.90197 0.96038 0.92111 0.90524 0.91574 0.91765 0.91851 0.92023 0.90987 0.91974 0.78007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 13.68 55.50 0.76 -25.05 16 2 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 3 Si 1.09 24.74 29.92 -169.99 -5.09 19.66 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.38 -11.04 9.68 -14.93 -0.14 -11.18 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.58 -15.03 5.28 -10.96 -0.06 -15.09 16 10 C 0.44 10.98 7.82 -10.98 -0.09 10.89 16 11 O -0.58 -16.34 15.78 5.55 0.09 -16.25 16 12 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 13 N -0.67 -11.69 6.13 -115.06 -0.70 -12.39 16 14 C 0.07 0.94 5.07 -3.83 -0.02 0.92 16 15 C -0.08 -0.91 2.14 -90.63 -0.19 -1.11 16 16 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 17 C -0.12 -1.26 4.97 -26.73 -0.13 -1.39 16 18 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 19 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 20 C -0.15 -1.21 5.55 -26.71 -0.15 -1.36 16 21 C 0.11 1.08 2.90 -26.71 -0.08 1.00 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 O -0.56 -5.82 12.56 -35.23 -0.44 -6.27 16 24 H 0.26 7.19 6.78 -40.82 -0.28 6.91 16 25 H 0.38 9.04 6.73 -40.82 -0.27 8.76 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.35 6.11 6.68 -39.29 -0.26 5.85 16 29 H 0.08 1.19 7.54 -51.93 -0.39 0.80 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.92 6.68 -51.93 -0.35 0.58 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.37 2.18 9.08 45.56 0.41 2.60 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -33.84 314.66 -7.33 -41.17 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.38 Total: 13.45 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.25 Total: -3.97 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.00 Total: -52.53 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.35 Total: -22.52 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.66 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.84 -7.33 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.340 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds