Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47326 * 240.00665 * 3 2 1 5 5 H 1.48500 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47561 * 120.00386 * 3 2 1 7 7 C 1.38943 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99991 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00130 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99941 * 179.97438 * 10 9 7 13 13 O 1.42894 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.42900 * 114.00094 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47002 * 29.99905 * 14 13 12 16 16 C 1.52999 * 109.47616 * 270.00173 * 14 13 12 17 17 C 1.52997 * 109.47317 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47060 * 59.99960 * 17 16 14 19 19 C 1.53002 * 109.47233 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 18 17 21 21 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 22 22 C 1.53002 * 109.47143 * 180.02562 * 20 19 18 23 23 N 1.46896 * 109.46876 * 294.99962 * 22 20 19 24 24 H 0.97006 * 119.99919 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99904 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47183 * 59.99316 * 12 10 9 27 27 H 1.09005 * 109.47199 * 300.00109 * 12 10 9 28 28 H 1.08996 * 109.46929 * 59.99102 * 16 14 13 29 29 H 1.09002 * 109.46716 * 299.99907 * 16 14 13 30 30 H 1.09002 * 109.47153 * 299.99641 * 17 16 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 14 32 32 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 33 33 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 34 34 H 1.08993 * 109.47662 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47075 * 300.00932 * 19 18 17 36 36 H 1.08997 * 109.47011 * 55.00129 * 22 20 19 37 37 H 1.08999 * 109.47369 * 175.00236 * 22 20 19 38 38 H 1.00907 * 111.00220 * 180.02562 * 23 22 20 39 39 H 1.00896 * 111.00229 * 303.95194 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 8 2.1724 -5.9490 0.0005 14 6 1.5579 -7.2392 0.0017 15 1 0.5979 -7.1848 -0.5118 16 6 1.3389 -7.6986 1.4445 17 6 0.6804 -9.0796 1.4457 18 6 1.5882 -10.0781 0.7247 19 6 1.8070 -9.6187 -0.7182 20 6 2.4656 -8.2377 -0.7194 21 1 3.4255 -8.2925 -0.2060 22 6 2.6839 -7.7780 -2.1623 23 7 3.6490 -8.6694 -2.8194 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9208 -0.8896 27 1 0.6174 -4.9205 0.8903 28 1 0.6920 -6.9874 1.9581 29 1 2.2989 -7.7530 1.9581 30 1 -0.2796 -9.0248 0.9323 31 1 0.5249 -9.4071 2.4737 32 1 2.5481 -10.1329 1.2381 33 1 1.1188 -11.0619 0.7252 34 1 2.4534 -10.3302 -1.2321 35 1 0.8471 -9.5639 -1.2316 36 1 1.7365 -7.8082 -2.7005 37 1 3.0706 -6.7590 -2.1644 38 1 3.8107 -8.3863 -3.7744 39 1 4.5148 -8.7087 -2.3028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = -109.566441 kcal Electronic energy + Delta-G solvation = -19433.273306 eV Core-core repulsion = 16374.618698 eV Total energy + Delta-G solvation = -3058.654608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51855 -38.08657 -36.06556 -34.58390 -33.89701 -31.27919 -30.30952 -29.94624 -27.37465 -24.56848 -24.35280 -22.17880 -21.03815 -20.05886 -19.30984 -17.94882 -16.80848 -15.81975 -15.67227 -15.40515 -14.90138 -14.54283 -14.46160 -14.26379 -13.93623 -13.84293 -13.12164 -12.96207 -12.91540 -12.20179 -11.95740 -11.88193 -11.64930 -11.55410 -11.08053 -10.97297 -10.92557 -10.53339 -10.46577 -10.45218 -10.24700 -10.19585 -9.53255 -9.16262 -8.65165 -8.35342 -7.99857 -6.43776 -3.85048 3.19281 3.24989 3.28959 3.71000 3.86462 4.22147 4.46047 4.65912 4.77106 4.91726 5.06283 5.14981 5.22145 5.25545 5.35544 5.41150 5.47022 5.51177 5.58108 5.67305 5.73835 5.86277 5.94122 6.02008 6.05604 6.08086 6.17684 6.21087 6.23155 6.32873 6.43115 7.08978 7.38671 7.51298 7.53232 8.03255 8.58981 9.15370 9.49791 10.01783 10.73914 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.004161 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.852999 B = 6727.562790 C = 7218.596041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.054 3.946 13 O -0.352 6.352 14 C 0.091 3.909 15 H 0.058 0.942 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.077 4.077 21 H 0.076 0.924 22 C 0.062 3.938 23 N -0.851 5.851 24 H 0.273 0.727 25 H 0.393 0.607 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.339 0.661 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 -17.156 -0.911 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.026 4.026 13 O -0.269 6.269 14 C 0.032 3.968 15 H 0.076 0.924 16 C -0.179 4.179 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.140 4.140 20 C -0.096 4.096 21 H 0.094 0.906 22 C -0.069 4.069 23 N -0.380 5.380 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.151 0.849 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.840 -17.534 -0.782 17.571 hybrid contribution -0.028 1.768 -0.026 1.769 sum -0.867 -15.766 -0.807 15.810 Atomic orbital electron populations 1.69606 1.05946 1.28346 1.50392 1.25262 0.95654 0.99714 0.97191 0.85895 0.78758 0.80311 0.79130 1.19853 1.20919 1.19841 1.19657 0.93385 0.82045 1.47883 0.87905 1.41754 1.09201 1.04288 1.64623 1.19574 0.88385 0.84360 0.84927 1.90536 1.13737 1.86983 1.54770 1.22195 0.92036 0.87699 1.00652 1.88050 1.31828 1.12218 1.94851 1.22111 0.95826 0.83850 0.95018 0.92415 1.22035 1.01773 0.96689 0.97423 1.21506 0.98768 0.94722 1.00427 1.21603 0.99897 0.98262 0.96288 1.21470 1.00694 0.95834 0.96019 1.21175 0.99492 0.93898 0.95056 0.90603 1.21803 0.96352 0.94766 0.93937 1.58813 1.16180 1.56417 1.06548 0.91754 0.77382 0.92029 0.92002 0.91688 0.91059 0.92047 0.91944 0.91985 0.92128 0.90455 0.92318 0.91558 0.93729 0.84944 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C 0.44 10.97 7.86 -10.98 -0.09 10.88 16 11 O -0.58 -16.68 16.07 -14.36 -0.23 -16.91 16 12 C 0.05 1.02 6.23 36.01 0.22 1.25 16 13 O -0.35 -6.53 8.76 -55.14 -0.48 -7.01 16 14 C 0.09 1.26 2.04 -26.73 -0.05 1.20 16 15 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 16 C -0.14 -1.75 5.54 -26.73 -0.15 -1.89 16 17 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 18 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 19 C -0.10 -1.05 5.09 -26.73 -0.14 -1.19 16 20 C -0.08 -0.96 2.07 -90.62 -0.19 -1.14 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 C 0.06 0.79 6.10 -3.83 -0.02 0.76 16 23 N -0.85 -9.09 9.08 -10.37 -0.09 -9.18 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 26 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 27 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 28 H 0.06 0.81 7.87 -51.93 -0.41 0.41 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.69 7.54 -51.93 -0.39 0.30 16 38 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 39 H 0.34 3.42 8.99 -39.29 -0.35 3.06 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -31.73 318.55 -7.69 -39.43 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.36 Total: 12.01 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.97 Total: -0.84 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.57 Total: -47.56 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.71 Total: -23.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.73 -7.69 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.137 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds