Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47326 * 240.00665 * 3 2 1 5 5 H 1.48500 * 109.47095 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47561 * 120.00386 * 3 2 1 7 7 C 1.38943 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.34784 * 119.99991 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00130 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99941 * 179.97438 * 10 9 7 13 13 O 1.42894 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.42900 * 114.00094 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47002 * 29.99905 * 14 13 12 16 16 C 1.52999 * 109.47616 * 270.00173 * 14 13 12 17 17 C 1.52997 * 109.47317 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47060 * 59.99960 * 17 16 14 19 19 C 1.53002 * 109.47233 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 18 17 21 21 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 22 22 C 1.53002 * 109.47143 * 180.02562 * 20 19 18 23 23 N 1.46896 * 109.46876 * 294.99962 * 22 20 19 24 24 H 0.97006 * 119.99919 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99904 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47183 * 59.99316 * 12 10 9 27 27 H 1.09005 * 109.47199 * 300.00109 * 12 10 9 28 28 H 1.08996 * 109.46929 * 59.99102 * 16 14 13 29 29 H 1.09002 * 109.46716 * 299.99907 * 16 14 13 30 30 H 1.09002 * 109.47153 * 299.99641 * 17 16 14 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 14 32 32 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 33 33 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 34 34 H 1.08993 * 109.47662 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47075 * 300.00932 * 19 18 17 36 36 H 1.08997 * 109.47011 * 55.00129 * 22 20 19 37 37 H 1.08999 * 109.47369 * 175.00236 * 22 20 19 38 38 H 1.00907 * 111.00220 * 180.02562 * 23 22 20 39 39 H 1.00896 * 111.00229 * 303.95194 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 8 2.1724 -5.9490 0.0005 14 6 1.5579 -7.2392 0.0017 15 1 0.5979 -7.1848 -0.5118 16 6 1.3389 -7.6986 1.4445 17 6 0.6804 -9.0796 1.4457 18 6 1.5882 -10.0781 0.7247 19 6 1.8070 -9.6187 -0.7182 20 6 2.4656 -8.2377 -0.7194 21 1 3.4255 -8.2925 -0.2060 22 6 2.6839 -7.7780 -2.1623 23 7 3.6490 -8.6694 -2.8194 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9208 -0.8896 27 1 0.6174 -4.9205 0.8903 28 1 0.6920 -6.9874 1.9581 29 1 2.2989 -7.7530 1.9581 30 1 -0.2796 -9.0248 0.9323 31 1 0.5249 -9.4071 2.4737 32 1 2.5481 -10.1329 1.2381 33 1 1.1188 -11.0619 0.7252 34 1 2.4534 -10.3302 -1.2321 35 1 0.8471 -9.5639 -1.2316 36 1 1.7365 -7.8082 -2.7005 37 1 3.0706 -6.7590 -2.1644 38 1 3.8107 -8.3863 -3.7744 39 1 4.5148 -8.7087 -2.3028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084241687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = -132.356570 kcal Electronic energy + Delta-G solvation = -19434.261560 eV Core-core repulsion = 16374.618698 eV Total energy + Delta-G solvation = -3059.642862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73827 -39.85953 -37.38701 -35.98117 -35.49268 -33.36559 -31.20419 -31.03340 -28.98530 -26.33460 -25.46660 -23.17564 -21.99399 -21.44038 -20.77016 -20.00548 -18.20477 -17.33727 -16.99529 -16.79213 -16.51359 -15.85971 -15.68879 -15.61337 -15.18000 -14.99723 -14.64230 -14.35473 -14.05215 -13.55665 -13.34776 -13.30764 -12.95982 -12.81460 -12.70480 -12.48478 -12.13721 -11.97362 -11.81617 -11.57801 -11.44451 -11.37891 -11.21148 -10.40078 -10.34239 -10.08493 -9.60617 -8.51235 -6.01287 1.37615 1.40530 1.51592 1.94557 2.18030 2.48397 3.14759 3.38463 3.56770 3.74242 3.90468 4.07792 4.10933 4.19372 4.30374 4.34501 4.36958 4.42619 4.44732 4.54467 4.62204 4.72717 4.87586 5.03267 5.07789 5.14253 5.27037 5.29150 5.32510 5.36431 5.47694 5.55994 5.89633 6.16505 6.26026 6.54735 6.56506 7.06304 7.46124 8.02056 8.65847 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.004161 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.852999 B = 6727.562790 C = 7218.596041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.564 5.564 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.068 3.932 13 O -0.382 6.382 14 C 0.085 3.915 15 H 0.074 0.926 16 C -0.140 4.140 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.094 4.094 20 C -0.074 4.074 21 H 0.060 0.940 22 C 0.067 3.933 23 N -0.844 5.844 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.008 0.992 38 H 0.347 0.653 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 -18.088 -0.953 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.208 4.208 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.202 5.202 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.012 4.012 13 O -0.301 6.301 14 C 0.027 3.973 15 H 0.092 0.908 16 C -0.178 4.178 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.131 4.131 20 C -0.093 4.093 21 H 0.078 0.922 22 C -0.064 4.064 23 N -0.374 5.374 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.159 0.841 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.191 -18.486 -0.828 18.634 hybrid contribution 0.387 2.018 -0.026 2.055 sum -1.804 -16.468 -0.854 16.589 Atomic orbital electron populations 1.69659 1.06818 1.29641 1.49565 1.26058 0.96588 1.02378 0.95817 0.84967 0.77816 0.76411 0.79015 1.19655 1.19111 1.19675 1.19637 0.92750 0.83841 1.50692 0.90405 1.41796 1.09417 1.04331 1.64700 1.20643 0.88175 0.86025 0.82988 1.90494 1.16182 1.88000 1.56668 1.22014 0.91243 0.84843 1.03066 1.88025 1.33106 1.13789 1.95201 1.22412 0.96546 0.81932 0.96433 0.90848 1.22029 1.01287 0.98423 0.96085 1.21493 0.98935 0.92921 1.01507 1.21602 0.99851 0.99059 0.95319 1.21409 1.00743 0.94035 0.96942 1.21172 0.98846 0.94955 0.94324 0.92165 1.21699 0.96894 0.93141 0.94634 1.58817 1.16150 1.55397 1.06988 0.91023 0.76646 0.89319 0.89432 0.91928 0.92552 0.90933 0.90710 0.92439 0.90136 0.90300 0.91536 0.90843 0.97361 0.84060 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.56 -29.74 5.29 -306.99 -1.62 -31.36 16 10 C 0.43 22.01 7.86 87.66 0.69 22.70 16 11 O -0.63 -37.72 16.07 15.99 0.26 -37.47 16 12 C 0.07 2.52 6.23 71.24 0.44 2.96 16 13 O -0.38 -14.26 8.76 -129.94 -1.14 -15.40 16 14 C 0.08 2.25 2.04 30.60 0.06 2.31 16 15 H 0.07 1.72 7.79 -2.39 -0.02 1.70 16 16 C -0.14 -3.28 5.54 30.59 0.17 -3.12 16 17 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 18 C -0.12 -1.94 5.92 30.60 0.18 -1.76 16 19 C -0.09 -1.71 5.09 30.59 0.16 -1.56 16 20 C -0.07 -1.77 2.07 -10.79 -0.02 -1.80 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 C 0.07 1.69 6.10 86.30 0.53 2.21 16 23 N -0.84 -17.41 9.08 -186.73 -1.70 -19.10 16 24 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 25 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 26 H 0.09 2.79 8.09 -2.39 -0.02 2.77 16 27 H 0.09 2.78 7.87 -2.38 -0.02 2.77 16 28 H 0.06 1.48 7.87 -2.39 -0.02 1.46 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.45 7.75 -2.39 -0.02 1.43 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.01 0.26 7.54 -2.39 -0.02 0.24 16 38 H 0.35 6.26 9.08 -89.69 -0.81 5.44 16 39 H 0.34 6.77 8.99 -89.70 -0.81 5.96 16 Total: -1.00 -69.48 318.55 0.49 -68.99 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -1.29 Total: 36.87 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 3.67 Total: 1.45 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.04 Total: -99.40 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.88 Total: -52.86 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.48 0.49 -68.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.367 kcal (2) G-P(sol) polarization free energy of solvation -69.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds