Wall clock time and date at job start Mon Mar 30 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46594 * 2 1 4 4 N 1.46897 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00028 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.56460 * 327.67956 * 5 4 3 7 7 C 1.54480 * 110.50870 * 90.35828 * 5 4 3 8 8 O 1.44434 * 104.80122 * 142.62263 * 7 5 4 9 9 C 1.44422 * 105.27434 * 319.48559 * 8 7 5 10 10 C 1.54476 * 104.80483 * 40.51434 * 9 8 7 11 11 H 1.08998 * 110.51562 * 217.24107 * 10 9 8 12 12 C 1.50704 * 110.51607 * 94.66441 * 10 9 8 13 13 O 1.21280 * 120.00014 * 241.45731 * 12 10 9 14 14 N 1.34774 * 119.99902 * 61.44954 * 12 10 9 15 15 C 1.46498 * 120.00067 * 180.02562 * 14 12 10 16 16 C 1.50695 * 109.46983 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00538 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99661 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.09006 * 109.46488 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47169 * 299.99740 * 1 2 3 26 26 H 1.08996 * 109.47218 * 60.00649 * 1 2 3 27 27 H 1.09000 * 109.47065 * 240.00121 * 2 1 3 28 28 H 1.08996 * 109.47218 * 119.99351 * 2 1 3 29 29 H 1.09003 * 109.46824 * 60.00187 * 3 2 1 30 30 H 1.08996 * 109.46808 * 299.99602 * 3 2 1 31 31 H 1.00907 * 110.99820 * 303.95608 * 4 3 2 32 32 H 1.08996 * 110.37155 * 23.79319 * 7 5 4 33 33 H 1.09000 * 110.46566 * 261.50061 * 7 5 4 34 34 H 1.09001 * 110.37625 * 281.68016 * 9 8 7 35 35 H 1.08999 * 110.46712 * 159.38941 * 9 8 7 36 36 H 0.97003 * 119.99826 * 0.02562 * 14 12 10 37 37 H 1.09002 * 109.46847 * 60.00131 * 15 14 12 38 38 H 1.09000 * 109.46849 * 300.00511 * 15 14 12 39 39 H 0.97001 * 119.99697 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8142 0.0000 6 1 3.3675 3.4803 -0.5463 7 6 4.2370 3.3171 1.4467 8 8 5.4469 4.1044 1.3982 9 6 6.3451 3.3693 0.5388 10 6 5.4541 2.8493 -0.6110 11 1 5.7663 1.8500 -0.9142 12 6 5.5006 3.7943 -1.7840 13 8 4.4865 4.3413 -2.1625 14 7 6.6690 4.0316 -2.4122 15 6 6.7144 4.9506 -3.5522 16 6 8.1268 5.0395 -4.0698 17 1 8.9123 4.4689 -3.5968 18 6 8.4165 5.8502 -5.1468 19 7 7.4601 6.5456 -5.7226 20 14 10.1675 5.9610 -5.7882 21 1 10.3800 4.9233 -6.8290 22 1 11.1192 5.7422 -4.6694 23 1 10.3953 7.3056 -6.3760 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.8702 0.9167 0.7823 32 1 4.3594 2.4748 2.1276 33 1 3.3943 3.9351 1.7563 34 1 6.7908 2.5350 1.0805 35 1 7.1226 4.0263 0.1489 36 1 7.4801 3.5939 -2.1096 37 1 6.3801 5.9387 -3.2357 38 1 6.0606 4.5817 -4.3425 39 1 6.5508 6.4877 -5.3898 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085389898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:08 Heat of formation + Delta-G solvation = -100.242602 kcal Electronic energy + Delta-G solvation = -19263.693436 eV Core-core repulsion = 16205.443140 eV Total energy + Delta-G solvation = -3058.250296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31348 -38.09498 -36.51941 -34.46961 -33.27035 -32.53580 -30.81870 -28.39309 -26.66496 -25.00894 -23.71227 -22.67076 -21.68182 -21.08370 -19.46979 -17.71048 -16.67453 -16.56489 -16.03207 -15.73160 -15.15524 -14.82133 -14.41971 -14.23204 -13.79328 -13.73946 -13.40165 -12.92563 -12.67813 -12.50164 -12.32717 -12.07233 -11.88690 -11.71435 -11.30470 -11.14666 -11.01997 -10.98578 -10.87988 -10.76144 -10.18070 -10.05351 -9.16003 -8.79081 -8.69048 -8.59759 -8.02359 -6.51853 -4.25440 3.19452 3.37489 3.41123 3.56590 3.65772 3.89075 4.22795 4.44854 4.45996 4.70242 4.75050 4.87365 4.97450 5.02671 5.12233 5.18415 5.27288 5.30428 5.46452 5.51728 5.54102 5.62449 5.65762 5.77673 5.78420 5.88852 5.97361 6.04892 6.56160 6.86955 6.99300 7.18121 7.21750 7.29106 7.64728 8.26142 8.44095 8.70738 8.94052 9.48404 10.88398 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.004065 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.347086 B = 6885.707569 C = 7412.804471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.677 5.677 5 C 0.065 3.935 6 H 0.118 0.882 7 C 0.020 3.980 8 O -0.367 6.367 9 C 0.052 3.948 10 C -0.139 4.139 11 H 0.118 0.882 12 C 0.513 3.487 13 O -0.553 6.553 14 N -0.706 5.706 15 C 0.240 3.760 16 C -0.623 4.623 17 H 0.058 0.942 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 1.079 2.921 21 H -0.286 1.286 22 H -0.287 1.287 23 H -0.282 1.282 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.338 0.662 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.392 0.608 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 -12.765 14.901 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.308 5.308 5 C -0.046 4.046 6 H 0.136 0.864 7 C -0.059 4.059 8 O -0.284 6.284 9 C -0.025 4.025 10 C -0.161 4.161 11 H 0.136 0.864 12 C 0.297 3.703 13 O -0.432 6.432 14 N -0.353 5.353 15 C 0.119 3.881 16 C -0.661 4.661 17 H 0.076 0.924 18 C -0.184 4.184 19 N -0.537 5.537 20 Si 0.906 3.094 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.208 1.208 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.225 0.775 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.913 -11.486 12.866 18.581 hybrid contribution -0.767 -0.949 2.124 2.450 sum -7.680 -12.435 14.990 20.936 Atomic orbital electron populations 1.21729 0.95527 1.01724 1.01951 1.21509 0.95669 0.96329 1.02534 1.22075 0.87047 0.97075 1.00981 1.60426 1.07898 1.12861 1.49629 1.22975 0.96421 0.90406 0.94791 0.86438 1.24203 0.88881 0.95892 0.96882 1.89175 1.25228 1.45499 1.68509 1.23475 0.93038 0.96643 0.89331 1.22666 0.96799 1.01179 0.95471 0.86370 1.20063 0.84185 0.82262 0.83760 1.90612 1.34096 1.51698 1.66819 1.46231 1.08849 1.46678 1.33588 1.19179 0.97957 0.88020 0.82986 1.22083 0.93169 1.31833 1.19056 0.92417 1.25889 1.06147 0.92578 0.93750 1.70731 1.02568 1.39007 1.41380 0.83406 0.73341 0.76819 0.75817 1.21265 1.21346 1.20787 0.92570 0.92878 0.92447 0.90984 0.92290 0.95223 0.90467 0.84344 0.92425 0.89058 0.91315 0.88215 0.77463 0.96502 0.96540 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.02 6.20 -26.72 -0.17 -1.18 16 3 C 0.06 0.57 5.55 -3.82 -0.02 0.55 16 4 N -0.68 -7.47 6.25 -105.07 -0.66 -8.13 16 5 C 0.06 0.88 3.03 -66.14 -0.20 0.68 16 6 H 0.12 1.96 6.19 -51.93 -0.32 1.63 16 7 C 0.02 0.24 7.31 37.93 0.28 0.52 16 8 O -0.37 -5.48 11.65 -35.23 -0.41 -5.90 16 9 C 0.05 0.69 7.14 37.93 0.27 0.96 16 10 C -0.14 -2.03 3.30 -90.20 -0.30 -2.33 16 11 H 0.12 1.53 7.97 -51.93 -0.41 1.12 16 12 C 0.51 10.41 7.13 -10.98 -0.08 10.33 16 13 O -0.55 -13.40 15.29 5.56 0.08 -13.31 16 14 N -0.71 -15.08 5.25 -61.47 -0.32 -15.40 16 15 C 0.24 6.40 4.74 -5.20 -0.02 6.38 16 16 C -0.62 -17.23 9.28 -34.44 -0.32 -17.54 16 17 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.90 -27.52 13.65 55.43 0.76 -26.76 16 20 Si 1.08 24.56 29.90 -169.99 -5.08 19.47 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.34 2.99 8.08 -39.29 -0.32 2.68 16 32 H 0.06 0.55 7.55 -51.93 -0.39 0.15 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.38 7.44 -51.93 -0.39 0.99 16 36 H 0.39 7.21 8.11 -40.82 -0.33 6.88 16 37 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 38 H 0.02 0.48 8.01 -51.93 -0.42 0.07 16 39 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -33.09 321.75 -7.36 -40.45 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.29 Total: 6.59 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.29 Total: -1.85 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.22 Total: -50.29 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.33 Total: -19.21 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.09 -7.36 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085389898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.793 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds