Wall clock time and date at job start Mon Mar 30 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46594 * 2 1 4 4 N 1.46897 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00028 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.56460 * 327.67956 * 5 4 3 7 7 C 1.54480 * 110.50870 * 90.35828 * 5 4 3 8 8 O 1.44434 * 104.80122 * 142.62263 * 7 5 4 9 9 C 1.44422 * 105.27434 * 319.48559 * 8 7 5 10 10 C 1.54476 * 104.80483 * 40.51434 * 9 8 7 11 11 H 1.08998 * 110.51562 * 217.24107 * 10 9 8 12 12 C 1.50704 * 110.51607 * 94.66441 * 10 9 8 13 13 O 1.21280 * 120.00014 * 241.45731 * 12 10 9 14 14 N 1.34774 * 119.99902 * 61.44954 * 12 10 9 15 15 C 1.46498 * 120.00067 * 180.02562 * 14 12 10 16 16 C 1.50695 * 109.46983 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00538 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99661 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.09006 * 109.46488 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47169 * 299.99740 * 1 2 3 26 26 H 1.08996 * 109.47218 * 60.00649 * 1 2 3 27 27 H 1.09000 * 109.47065 * 240.00121 * 2 1 3 28 28 H 1.08996 * 109.47218 * 119.99351 * 2 1 3 29 29 H 1.09003 * 109.46824 * 60.00187 * 3 2 1 30 30 H 1.08996 * 109.46808 * 299.99602 * 3 2 1 31 31 H 1.00907 * 110.99820 * 303.95608 * 4 3 2 32 32 H 1.08996 * 110.37155 * 23.79319 * 7 5 4 33 33 H 1.09000 * 110.46566 * 261.50061 * 7 5 4 34 34 H 1.09001 * 110.37625 * 281.68016 * 9 8 7 35 35 H 1.08999 * 110.46712 * 159.38941 * 9 8 7 36 36 H 0.97003 * 119.99826 * 0.02562 * 14 12 10 37 37 H 1.09002 * 109.46847 * 60.00131 * 15 14 12 38 38 H 1.09000 * 109.46849 * 300.00511 * 15 14 12 39 39 H 0.97001 * 119.99697 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8142 0.0000 6 1 3.3675 3.4803 -0.5463 7 6 4.2370 3.3171 1.4467 8 8 5.4469 4.1044 1.3982 9 6 6.3451 3.3693 0.5388 10 6 5.4541 2.8493 -0.6110 11 1 5.7663 1.8500 -0.9142 12 6 5.5006 3.7943 -1.7840 13 8 4.4865 4.3413 -2.1625 14 7 6.6690 4.0316 -2.4122 15 6 6.7144 4.9506 -3.5522 16 6 8.1268 5.0395 -4.0698 17 1 8.9123 4.4689 -3.5968 18 6 8.4165 5.8502 -5.1468 19 7 7.4601 6.5456 -5.7226 20 14 10.1675 5.9610 -5.7882 21 1 10.3800 4.9233 -6.8290 22 1 11.1192 5.7422 -4.6694 23 1 10.3953 7.3056 -6.3760 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.8702 0.9167 0.7823 32 1 4.3594 2.4748 2.1276 33 1 3.3943 3.9351 1.7563 34 1 6.7908 2.5350 1.0805 35 1 7.1226 4.0263 0.1489 36 1 7.4801 3.5939 -2.1096 37 1 6.3801 5.9387 -3.2357 38 1 6.0606 4.5817 -4.3425 39 1 6.5508 6.4877 -5.3898 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085389898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:08 Heat of formation + Delta-G solvation = -126.804023 kcal Electronic energy + Delta-G solvation = -19264.845225 eV Core-core repulsion = 16205.443140 eV Total energy + Delta-G solvation = -3059.402085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61336 -39.60845 -37.39384 -36.47880 -34.55569 -34.14350 -32.04648 -29.37884 -28.61803 -25.85402 -25.27365 -24.33556 -22.56942 -22.25969 -21.03263 -19.48078 -18.17061 -17.71936 -17.32790 -16.95818 -16.30964 -16.02811 -15.86780 -15.62381 -15.42166 -14.95796 -14.60990 -14.37925 -14.12710 -14.06945 -13.43881 -13.39693 -13.12741 -12.86013 -12.60051 -12.53641 -12.34855 -12.20141 -11.89387 -11.79555 -11.63762 -11.26624 -10.95546 -10.78395 -10.65382 -10.02263 -9.49093 -8.81695 -6.57315 1.55313 1.57857 1.65243 1.82125 2.24565 2.56097 2.76352 3.06735 3.18766 3.33661 3.69285 3.82319 3.97342 4.06724 4.12446 4.18007 4.39013 4.44813 4.55906 4.59168 4.63308 4.69139 4.76756 4.79403 4.83820 4.89893 4.92072 5.17035 5.29655 5.37038 5.39166 5.51011 5.61134 5.92004 6.05460 6.28711 6.44799 6.72681 7.19367 7.36132 8.57627 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.004065 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.347086 B = 6885.707569 C = 7412.804471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.057 3.943 4 N -0.677 5.677 5 C 0.069 3.931 6 H 0.078 0.922 7 C 0.025 3.975 8 O -0.395 6.395 9 C 0.056 3.944 10 C -0.127 4.127 11 H 0.144 0.856 12 C 0.506 3.494 13 O -0.600 6.600 14 N -0.701 5.701 15 C 0.253 3.747 16 C -0.629 4.629 17 H 0.078 0.922 18 C -0.034 4.034 19 N -0.930 5.930 20 Si 1.133 2.867 21 H -0.270 1.270 22 H -0.259 1.259 23 H -0.286 1.286 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.356 0.644 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.410 0.590 37 H -0.019 1.019 38 H -0.018 1.018 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 -15.062 16.971 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.071 4.071 4 N -0.310 5.310 5 C -0.043 4.043 6 H 0.096 0.904 7 C -0.054 4.054 8 O -0.313 6.313 9 C -0.021 4.021 10 C -0.149 4.149 11 H 0.162 0.838 12 C 0.293 3.707 13 O -0.482 6.482 14 N -0.350 5.350 15 C 0.130 3.870 16 C -0.666 4.666 17 H 0.096 0.904 18 C -0.232 4.232 19 N -0.566 5.566 20 Si 0.952 3.048 21 H -0.195 1.195 22 H -0.183 1.183 23 H -0.211 1.211 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.177 0.823 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.246 0.754 37 H -0.001 1.001 38 H 0.000 1.000 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.228 -13.835 14.992 21.060 hybrid contribution -1.400 -0.247 1.508 2.072 sum -6.628 -14.082 16.500 22.682 Atomic orbital electron populations 1.21731 0.94908 1.02416 1.01835 1.21459 0.96160 0.94870 1.02864 1.22069 0.86537 0.98275 1.00262 1.60336 1.08470 1.11431 1.50758 1.22756 0.94873 0.91196 0.95458 0.90387 1.24319 0.88093 0.96803 0.96145 1.89149 1.26441 1.47070 1.68675 1.23610 0.92095 0.97676 0.88707 1.22676 0.98538 1.00341 0.93386 0.83828 1.21172 0.82778 0.82168 0.84547 1.90596 1.35662 1.53581 1.68332 1.45998 1.10414 1.46125 1.32456 1.18677 0.97213 0.87286 0.83839 1.22448 0.93608 1.31586 1.18978 0.90358 1.27701 1.09723 0.91677 0.94105 1.70882 1.02206 1.40986 1.42543 0.82756 0.68490 0.77019 0.76520 1.19522 1.18286 1.21132 0.91460 0.92156 0.93467 0.92063 0.90444 0.94010 0.93219 0.82314 0.88711 0.88828 0.86714 0.89351 0.75387 1.00114 1.00013 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.71 6.20 30.60 0.19 -1.52 16 3 C 0.06 1.10 5.55 86.31 0.48 1.57 16 4 N -0.68 -13.56 6.25 -486.32 -3.04 -16.60 16 5 C 0.07 1.78 3.03 45.93 0.14 1.92 16 6 H 0.08 2.70 6.19 -2.39 -0.01 2.68 16 7 C 0.02 0.53 7.31 72.49 0.53 1.06 16 8 O -0.40 -11.02 11.65 -148.98 -1.74 -12.75 16 9 C 0.06 1.31 7.14 72.48 0.52 1.83 16 10 C -0.13 -3.53 3.30 -10.52 -0.03 -3.57 16 11 H 0.14 3.28 7.97 -2.39 -0.02 3.27 16 12 C 0.51 20.97 7.13 87.66 0.62 21.60 16 13 O -0.60 -30.71 15.29 -3.03 -0.05 -30.76 16 14 N -0.70 -30.38 5.25 -466.80 -2.45 -32.83 16 15 C 0.25 14.13 4.74 85.63 0.41 14.54 16 16 C -0.63 -34.93 9.28 25.60 0.24 -34.70 16 17 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 18 C -0.03 -1.92 5.46 84.65 0.46 -1.46 16 19 N -0.93 -58.55 13.65 21.45 0.29 -58.25 16 20 Si 1.13 48.31 29.90 68.60 2.05 50.37 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 24 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.36 4.95 8.08 -89.69 -0.73 4.22 16 32 H 0.09 1.36 7.55 -2.39 -0.02 1.34 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.28 7.44 -2.39 -0.02 2.26 16 36 H 0.41 14.66 8.11 -92.71 -0.75 13.91 16 37 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 38 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 39 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 Total: -1.00 -75.87 321.75 -0.99 -76.87 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.33 Total: 23.99 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.26 Total: -0.03 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -5.20 Total: -107.69 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.78 Total: -43.51 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.37 kcal Total: -75.87 -0.99 -76.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085389898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.935 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds