Wall clock time and date at job start Mon Mar 30 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 N 1.46900 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.46900 * 111.00117 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.56336 * 32.31863 * 5 4 3 7 7 C 1.54476 * 110.51084 * 269.64315 * 5 4 3 8 8 O 1.44421 * 104.80355 * 217.37207 * 7 5 4 9 9 C 1.44430 * 105.27656 * 40.51145 * 8 7 5 10 10 C 1.54483 * 104.79997 * 319.49198 * 9 8 7 11 11 H 1.09002 * 110.51140 * 142.75964 * 10 9 8 12 12 C 1.50706 * 110.50677 * 265.32685 * 10 9 8 13 13 O 1.21283 * 119.99503 * 118.54781 * 12 10 9 14 14 N 1.34773 * 120.00081 * 298.27508 * 12 10 9 15 15 C 1.46506 * 119.99968 * 180.02562 * 14 12 10 16 16 C 1.50690 * 109.47072 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00210 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99820 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99971 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00179 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46867 * 90.00012 * 20 18 16 22 22 H 1.48499 * 109.47206 * 210.00316 * 20 18 16 23 23 H 1.48503 * 109.46903 * 330.00345 * 20 18 16 24 24 H 1.09005 * 109.46630 * 300.00318 * 1 2 3 25 25 H 1.08997 * 109.46994 * 59.99371 * 1 2 3 26 26 H 1.08991 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46630 * 239.99682 * 2 1 3 28 28 H 1.08997 * 109.46994 * 120.00629 * 2 1 3 29 29 H 1.08997 * 109.46837 * 60.00281 * 3 2 1 30 30 H 1.09000 * 109.47146 * 299.99982 * 3 2 1 31 31 H 1.00900 * 111.00374 * 303.95564 * 4 3 2 32 32 H 1.08998 * 110.37166 * 98.54382 * 7 5 4 33 33 H 1.08993 * 110.37124 * 336.20373 * 7 5 4 34 34 H 1.08993 * 110.37885 * 200.65623 * 9 8 7 35 35 H 1.09002 * 110.37032 * 78.31373 * 9 8 7 36 36 H 0.96998 * 120.00525 * 359.97438 * 14 12 10 37 37 H 1.09004 * 109.46587 * 299.99661 * 15 14 12 38 38 H 1.08998 * 109.47213 * 59.99069 * 15 14 12 39 39 H 0.97005 * 120.00148 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0357 2.8137 0.0000 6 1 3.3680 3.4800 0.5463 7 6 4.2375 3.3166 -1.4466 8 8 5.4473 4.1038 -1.3982 9 6 6.3456 3.3687 -0.5387 10 6 5.4543 2.8487 0.6110 11 1 5.7666 1.8493 0.9143 12 6 5.5010 3.7937 1.7840 13 8 4.4869 4.3408 2.1626 14 7 6.6685 4.0265 2.4158 15 6 6.7137 4.9448 3.5564 16 6 8.1249 5.0285 4.0782 17 1 8.9096 4.4547 3.6076 18 6 8.4144 5.8375 5.1565 19 7 9.6459 5.9102 5.6123 20 14 7.0573 6.8305 5.9701 21 1 6.4389 6.0273 7.0552 22 1 7.6296 8.0762 6.5409 23 1 6.0246 7.1773 4.9608 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.8710 0.9161 0.7805 32 1 3.3945 3.9352 -1.7544 33 1 4.3598 2.4744 -2.1275 34 1 7.1219 4.0270 -0.1490 35 1 6.7911 2.5343 -1.0804 36 1 7.4787 3.5856 2.1157 37 1 6.3839 5.9342 3.2396 38 1 6.0564 4.5778 4.3446 39 1 9.8497 6.4797 6.3707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085389901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:10 Heat of formation + Delta-G solvation = -118.518137 kcal Electronic energy + Delta-G solvation = -19293.034260 eV Core-core repulsion = 16233.991477 eV Total energy + Delta-G solvation = -3059.042782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57807 -39.50068 -37.37068 -36.25025 -34.49687 -34.13886 -32.07439 -29.83585 -29.14860 -25.92779 -25.14987 -23.83105 -22.31484 -22.14115 -21.11053 -19.25929 -18.18079 -17.53287 -17.15129 -16.89008 -16.67320 -16.15581 -15.99565 -15.75542 -15.43304 -15.10908 -14.66256 -14.38135 -14.12422 -14.05350 -13.38537 -13.25172 -13.13069 -12.78437 -12.68308 -12.49108 -12.34608 -12.07955 -11.96895 -11.74427 -11.68590 -11.61454 -11.14765 -10.94684 -10.63192 -10.02168 -9.55524 -8.42505 -6.49626 1.29723 1.32657 1.44631 1.57219 2.24201 2.27642 2.87158 2.92951 3.18080 3.25137 3.74202 3.85121 4.07029 4.10268 4.20148 4.34011 4.38934 4.50987 4.60075 4.65645 4.69437 4.75837 4.77088 4.79641 4.86750 4.96641 4.97593 5.19326 5.22041 5.30108 5.39455 5.43932 5.65923 5.97340 6.04675 6.29748 6.50953 6.74265 7.11521 7.30417 8.72105 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.004425 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.085209 B = 6325.886992 C = 6929.102823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.055 3.945 4 N -0.668 5.668 5 C 0.064 3.936 6 H 0.056 0.944 7 C 0.059 3.941 8 O -0.397 6.397 9 C 0.060 3.940 10 C -0.139 4.139 11 H 0.146 0.854 12 C 0.507 3.493 13 O -0.594 6.594 14 N -0.700 5.700 15 C 0.232 3.768 16 C -0.547 4.547 17 H 0.062 0.938 18 C 0.028 3.972 19 N -0.929 5.929 20 Si 0.936 3.064 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.264 1.264 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.075 0.925 31 H 0.348 0.652 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.410 0.590 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -12.296 -13.798 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.075 4.075 4 N -0.300 5.300 5 C -0.046 4.046 6 H 0.074 0.926 7 C -0.018 4.018 8 O -0.315 6.315 9 C -0.017 4.017 10 C -0.161 4.161 11 H 0.164 0.836 12 C 0.294 3.706 13 O -0.476 6.476 14 N -0.349 5.349 15 C 0.108 3.892 16 C -0.585 4.585 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.568 5.568 20 Si 0.759 3.241 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.246 0.754 37 H 0.028 0.972 38 H 0.030 0.970 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.796 -11.675 -14.165 22.963 hybrid contribution -0.060 0.713 1.806 1.942 sum -13.856 -10.962 -12.360 21.562 Atomic orbital electron populations 1.21729 0.94923 1.02374 1.01852 1.21452 0.96142 0.94922 1.02825 1.22139 0.86777 0.98212 1.00323 1.60696 1.08237 1.11133 1.49969 1.22804 0.93803 0.91442 0.96596 0.92558 1.23545 0.87343 0.95627 0.95260 1.89140 1.26514 1.47106 1.68784 1.23515 0.92050 0.97549 0.88614 1.22871 0.98484 1.00788 0.93919 0.83647 1.21001 0.82864 0.82379 0.84344 1.90613 1.35390 1.53355 1.68203 1.45983 1.10570 1.46045 1.32315 1.19107 0.96095 0.89019 0.84969 1.21268 0.93215 1.28252 1.15715 0.91961 1.25574 0.97628 0.97107 0.96948 1.69976 1.20379 1.40090 1.26336 0.85888 0.79656 0.79072 0.79453 1.18881 1.19725 1.18819 0.93323 0.92249 0.91544 0.90578 0.92041 0.96408 0.90651 0.83330 0.89033 0.89073 0.89183 0.87331 0.75359 0.97238 0.97013 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.64 6.19 30.59 0.19 -1.45 16 3 C 0.05 0.99 5.55 86.30 0.48 1.47 16 4 N -0.67 -12.83 6.31 -486.35 -3.07 -15.90 16 5 C 0.06 1.59 3.03 45.93 0.14 1.73 16 6 H 0.06 1.80 6.19 -2.39 -0.01 1.78 16 7 C 0.06 1.35 7.35 72.48 0.53 1.89 16 8 O -0.40 -11.16 11.65 -148.98 -1.74 -12.89 16 9 C 0.06 1.40 7.15 72.49 0.52 1.91 16 10 C -0.14 -3.51 3.18 -10.52 -0.03 -3.54 16 11 H 0.15 2.76 7.56 -2.39 -0.02 2.74 16 12 C 0.51 18.71 7.12 87.66 0.62 19.33 16 13 O -0.59 -26.93 15.29 -3.04 -0.05 -26.98 16 14 N -0.70 -27.50 5.25 -466.79 -2.45 -29.95 16 15 C 0.23 11.37 4.50 85.63 0.38 11.75 16 16 C -0.55 -29.97 9.83 25.60 0.25 -29.71 16 17 H 0.06 3.56 7.84 -2.91 -0.02 3.53 16 18 C 0.03 1.58 5.47 84.65 0.46 2.04 16 19 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 20 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 21 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 24 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.02 0.38 8.08 -2.39 -0.02 0.37 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.35 6.23 8.07 -89.69 -0.72 5.51 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.09 2.27 7.47 -2.39 -0.02 2.25 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.41 13.83 8.14 -92.71 -0.75 13.07 16 37 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 38 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 39 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -68.50 319.59 -1.34 -69.84 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.49 Total: 20.55 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.26 Total: 4.24 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.22 Total: -100.77 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.78 Total: -39.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -68.50 -1.34 -69.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085389901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.680 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds