Wall clock time and date at job start Mon Mar 30 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.50704 * 54.99959 * 17 16 14 19 19 C 1.53089 * 109.50859 * 175.08733 * 17 16 14 20 20 N 1.47016 * 109.25714 * 176.73866 * 19 17 16 21 21 C 1.47010 * 110.79011 * 301.45151 * 20 19 17 22 22 C 1.53094 * 109.25769 * 58.59014 * 21 20 19 23 23 O 1.43012 * 109.26153 * 303.15048 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 32 32 H 1.09004 * 109.47137 * 59.99859 * 16 14 13 33 33 H 1.08998 * 109.50772 * 296.71895 * 19 17 16 34 34 H 1.09002 * 109.51070 * 56.84844 * 19 17 16 35 35 H 1.00901 * 111.00010 * 177.64848 * 20 19 17 36 36 H 1.08997 * 109.51024 * 298.65689 * 21 20 19 37 37 H 1.09004 * 109.54313 * 178.54671 * 21 20 19 38 38 H 1.09001 * 109.50594 * 183.21623 * 22 21 20 39 39 H 1.09000 * 109.50827 * 63.09301 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 6 -1.3826 3.8942 -2.5214 18 1 -1.4365 4.5505 -1.6528 19 6 -1.7427 4.6843 -3.7822 20 7 -3.1338 5.1494 -3.6822 21 6 -4.0531 4.0139 -3.5181 22 6 -3.6694 3.2314 -2.2595 23 8 -2.3055 2.8134 -2.3613 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 0.7281 4.1540 -2.8669 32 1 0.0680 2.6143 -3.4688 33 1 -1.0772 5.5424 -3.8765 34 1 -1.6362 4.0425 -4.6568 35 1 -3.3872 5.7069 -4.4841 36 1 -3.9837 3.3608 -4.3880 37 1 -5.0742 4.3827 -3.4203 38 1 -4.3122 2.3562 -2.1649 39 1 -3.7904 3.8688 -1.3836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085620060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:57 Heat of formation + Delta-G solvation = -81.239362 kcal Electronic energy + Delta-G solvation = -19999.034068 eV Core-core repulsion = 16941.607814 eV Total energy + Delta-G solvation = -3057.426253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78640 -38.65214 -35.30377 -34.59885 -32.86025 -32.27124 -31.35088 -28.69063 -27.33214 -25.60863 -23.28234 -22.47002 -20.74785 -20.29436 -19.45283 -17.24753 -16.91702 -16.49858 -15.90382 -15.55304 -14.94814 -14.74884 -14.59631 -14.39130 -13.86268 -13.82195 -13.20618 -12.74767 -12.61593 -12.40877 -11.97269 -11.77378 -11.60692 -11.38833 -11.23916 -10.98909 -10.81930 -10.59097 -10.48337 -9.86450 -9.65707 -9.48063 -9.16615 -8.95016 -8.73419 -8.70656 -7.94894 -6.17607 -4.19442 3.27043 3.38345 3.38933 3.45041 3.77460 3.81260 4.10859 4.35643 4.78273 4.85430 4.93227 5.00557 5.15931 5.16534 5.25200 5.43615 5.48758 5.53897 5.67463 5.76015 5.89317 6.06853 6.08218 6.11899 6.28799 6.58931 6.75113 6.79085 6.94175 6.98462 7.08350 7.28446 7.36082 7.39769 7.59833 8.22614 8.62139 8.80844 9.08618 9.44455 10.94562 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042610 B = 0.004974 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.960261 B = 5628.020089 C = 6022.802811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.706 5.706 14 C 0.505 3.495 15 O -0.538 6.538 16 C -0.138 4.138 17 C 0.112 3.888 18 H 0.074 0.926 19 C 0.024 3.976 20 N -0.689 5.689 21 C 0.019 3.981 22 C 0.064 3.936 23 O -0.365 6.365 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.393 0.607 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.344 0.656 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 5.764 -11.534 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.416 6.416 16 C -0.179 4.179 17 C 0.053 3.947 18 H 0.092 0.908 19 C -0.105 4.105 20 N -0.320 5.320 21 C -0.111 4.111 22 C -0.013 4.013 23 O -0.283 6.283 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.226 0.774 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.497 5.616 -10.047 19.303 hybrid contribution -0.142 -0.619 -0.652 0.910 sum -15.638 4.997 -10.699 19.596 Atomic orbital electron populations 1.21867 0.96736 0.98863 1.02550 1.22277 0.94504 1.00000 1.00858 1.19104 0.95401 0.88483 0.83065 0.93449 1.21083 0.88761 1.39590 1.07733 0.90267 1.24837 0.94850 0.95169 0.97696 1.69870 1.08700 1.44711 1.29831 0.86892 0.80985 0.79965 0.80818 1.20291 1.22255 1.18450 1.46154 1.14974 1.56452 1.17839 1.20189 0.82361 0.79402 0.89064 1.90676 1.51067 1.59395 1.40452 1.21720 0.95685 1.02098 0.98376 1.21776 0.88174 0.88425 0.96336 0.90757 1.22675 0.90335 0.99525 0.97999 1.60480 1.02349 1.21918 1.47261 1.22657 0.97022 0.92588 0.98799 1.22569 0.83820 0.98800 0.96107 1.88079 1.15165 1.31316 1.93754 0.95260 0.92420 0.93039 0.93009 0.92460 0.92350 0.77403 0.87830 0.88740 0.89525 0.94196 0.83837 0.94404 0.89877 0.88779 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.14 -3.15 5.11 -26.73 -0.14 -3.29 16 3 C 0.24 5.85 1.83 -69.08 -0.13 5.72 16 4 H 0.05 1.27 6.64 -51.93 -0.34 0.92 16 5 C -0.53 -14.54 9.31 -34.44 -0.32 -14.87 16 6 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.88 22.15 24.41 -169.99 -4.15 18.00 16 10 H -0.28 -6.72 6.83 56.52 0.39 -6.34 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 13 N -0.71 -13.98 5.02 -54.93 -0.28 -14.26 16 14 C 0.51 9.43 6.28 -10.98 -0.07 9.36 16 15 O -0.54 -11.94 12.56 -8.70 -0.11 -12.05 16 16 C -0.14 -1.85 5.41 -27.88 -0.15 -2.00 16 17 C 0.11 1.52 2.35 -26.69 -0.06 1.46 16 18 H 0.07 1.16 7.96 -51.93 -0.41 0.74 16 19 C 0.02 0.25 6.05 -3.71 -0.02 0.23 16 20 N -0.69 -6.72 6.92 -113.50 -0.79 -7.50 16 21 C 0.02 0.18 6.76 -3.72 -0.03 0.15 16 22 C 0.06 0.78 7.01 37.21 0.26 1.04 16 23 O -0.36 -5.62 9.71 -49.50 -0.48 -6.10 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.22 5.64 -51.93 -0.29 0.92 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.05 1.24 3.21 -51.93 -0.17 1.08 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.39 6.82 8.54 -40.82 -0.35 6.47 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 2.53 8.90 -39.29 -0.35 2.18 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -32.73 303.57 -7.04 -39.77 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.15 Total: 6.28 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.43 Total: -2.78 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.29 Total: -47.70 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.59 Total: -18.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.15 Total: 18.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.73 -7.04 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085620060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.467 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds