Wall clock time and date at job start Mon Mar 30 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21274 * 119.99855 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47174 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.50704 * 54.99959 * 17 16 14 19 19 C 1.53089 * 109.50859 * 175.08733 * 17 16 14 20 20 N 1.47016 * 109.25714 * 176.73866 * 19 17 16 21 21 C 1.47010 * 110.79011 * 301.45151 * 20 19 17 22 22 C 1.53094 * 109.25769 * 58.59014 * 21 20 19 23 23 O 1.43012 * 109.26153 * 303.15048 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.09001 * 109.47037 * 299.99900 * 16 14 13 32 32 H 1.09004 * 109.47137 * 59.99859 * 16 14 13 33 33 H 1.08998 * 109.50772 * 296.71895 * 19 17 16 34 34 H 1.09002 * 109.51070 * 56.84844 * 19 17 16 35 35 H 1.00901 * 111.00010 * 177.64848 * 20 19 17 36 36 H 1.08997 * 109.51024 * 298.65689 * 21 20 19 37 37 H 1.09004 * 109.54313 * 178.54671 * 21 20 19 38 38 H 1.09001 * 109.50594 * 183.21623 * 22 21 20 39 39 H 1.09000 * 109.50827 * 63.09301 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 6 -1.3826 3.8942 -2.5214 18 1 -1.4365 4.5505 -1.6528 19 6 -1.7427 4.6843 -3.7822 20 7 -3.1338 5.1494 -3.6822 21 6 -4.0531 4.0139 -3.5181 22 6 -3.6694 3.2314 -2.2595 23 8 -2.3055 2.8134 -2.3613 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 2.2720 2.1231 -1.9978 31 1 0.7281 4.1540 -2.8669 32 1 0.0680 2.6143 -3.4688 33 1 -1.0772 5.5424 -3.8765 34 1 -1.6362 4.0425 -4.6568 35 1 -3.3872 5.7069 -4.4841 36 1 -3.9837 3.3608 -4.3880 37 1 -5.0742 4.3827 -3.4203 38 1 -4.3122 2.3562 -2.1649 39 1 -3.7904 3.8688 -1.3836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085620060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:57 Heat of formation + Delta-G solvation = -107.824897 kcal Electronic energy + Delta-G solvation = -20000.186903 eV Core-core repulsion = 16941.607814 eV Total energy + Delta-G solvation = -3058.579089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03062 -39.93319 -37.07065 -35.49614 -34.36853 -33.98060 -32.96023 -29.93337 -29.01627 -26.60956 -24.70377 -23.99649 -22.29865 -21.31995 -21.09969 -19.08870 -17.83136 -17.60612 -17.57491 -17.22939 -16.25519 -16.08841 -15.76433 -15.44096 -15.25031 -15.01930 -14.76662 -14.37526 -14.13739 -13.79822 -13.67738 -13.29087 -12.91908 -12.75702 -12.72393 -12.39806 -12.33262 -12.19252 -11.84750 -11.49850 -11.36644 -11.21349 -10.85256 -10.66756 -10.48195 -9.67458 -9.47533 -8.37829 -6.42385 1.26305 1.34381 1.44761 1.93288 2.26244 2.52639 2.84529 2.98255 3.19555 3.80621 3.92554 4.02715 4.17432 4.20438 4.26017 4.33077 4.34585 4.46620 4.57031 4.58189 4.69250 4.71438 4.86485 4.88761 4.99309 5.00945 5.08709 5.15021 5.27708 5.44402 5.53703 5.74377 5.84424 6.17796 6.31000 6.40439 6.60039 6.99536 7.21873 7.60793 8.77402 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042610 B = 0.004974 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.960261 B = 5628.020089 C = 6022.802811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.293 1.293 12 H -0.264 1.264 13 N -0.706 5.706 14 C 0.500 3.500 15 O -0.576 6.576 16 C -0.127 4.127 17 C 0.108 3.892 18 H 0.045 0.955 19 C 0.032 3.968 20 N -0.699 5.699 21 C 0.026 3.974 22 C 0.056 3.944 23 O -0.394 6.394 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.270 0.730 30 H 0.406 0.594 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.360 0.640 36 H 0.044 0.956 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.681 5.793 -13.265 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.189 1.189 13 N -0.356 5.356 14 C 0.288 3.712 15 O -0.456 6.456 16 C -0.166 4.166 17 C 0.050 3.950 18 H 0.063 0.937 19 C -0.097 4.097 20 N -0.333 5.333 21 C -0.103 4.103 22 C -0.021 4.021 23 O -0.314 6.314 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.241 0.759 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.180 0.820 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.978 5.660 -11.823 21.449 hybrid contribution 0.303 -0.564 -0.133 0.654 sum -16.675 5.096 -11.956 21.142 Atomic orbital electron populations 1.21723 0.95263 1.00192 1.01574 1.22200 0.95704 0.98738 1.00810 1.18717 0.93046 0.89505 0.84237 0.96433 1.21324 0.90410 1.38328 1.06881 0.92355 1.25517 0.95676 0.95928 0.99789 1.69970 1.10171 1.46298 1.30848 0.86054 0.79230 0.79925 0.78503 1.18655 1.22001 1.18882 1.46017 1.16049 1.56671 1.16822 1.21107 0.81140 0.78455 0.90492 1.90663 1.51982 1.60567 1.42373 1.21752 0.96252 1.03164 0.95479 1.21816 0.88106 0.88053 0.97066 0.93675 1.22570 0.91057 0.99899 0.96186 1.60435 1.02185 1.22231 1.48412 1.22590 0.97916 0.92430 0.97407 1.22749 0.82814 0.99525 0.97009 1.88025 1.16663 1.32618 1.94051 0.92678 0.92520 0.94893 0.94081 0.91374 0.92112 0.75894 0.84594 0.86446 0.87678 0.93064 0.81987 0.93786 0.87857 0.87678 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.72 16 2 C -0.14 -6.07 5.11 30.60 0.16 -5.92 16 3 C 0.25 12.03 1.83 44.25 0.08 12.11 16 4 H 0.02 0.97 6.64 -2.39 -0.02 0.95 16 5 C -0.53 -29.24 9.31 25.60 0.24 -29.00 16 6 H 0.06 3.38 7.98 -2.91 -0.02 3.36 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -56.47 13.96 21.45 0.30 -56.17 16 9 Si 0.94 45.85 24.41 68.60 1.67 47.53 16 10 H -0.26 -12.06 6.83 99.48 0.68 -11.38 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.26 -13.02 6.53 99.48 0.65 -12.37 16 13 N -0.71 -27.45 5.02 -446.08 -2.24 -29.69 16 14 C 0.50 18.26 6.28 87.66 0.55 18.81 16 15 O -0.58 -25.69 12.56 10.63 0.13 -25.56 16 16 C -0.13 -3.09 5.41 29.85 0.16 -2.93 16 17 C 0.11 2.79 2.35 30.62 0.07 2.86 16 18 H 0.05 1.41 7.96 -2.38 -0.02 1.39 16 19 C 0.03 0.57 6.05 86.31 0.52 1.09 16 20 N -0.70 -11.79 6.92 -513.01 -3.55 -15.34 16 21 C 0.03 0.43 6.76 86.31 0.58 1.02 16 22 C 0.06 1.30 7.01 72.01 0.50 1.80 16 23 O -0.39 -11.76 9.71 -135.34 -1.31 -13.07 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.06 2.32 5.64 -2.39 -0.01 2.31 16 26 H 0.03 1.44 7.85 -2.38 -0.02 1.43 16 27 H 0.04 1.92 3.21 -2.39 -0.01 1.91 16 28 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 30 H 0.41 13.59 8.54 -92.71 -0.79 12.80 16 31 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.36 4.15 8.90 -89.69 -0.80 3.35 16 36 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.58 303.57 -1.67 -73.25 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.62 Total: 21.73 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 3.94 Total: -2.67 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -5.49 Total: -101.20 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.18 Total: -38.63 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.53 kcal Total: -71.58 -1.67 -73.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085620060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.573 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds