Wall clock time and date at job start Mon Mar 30 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48495 * 109.46931 * 270.00289 * 3 2 1 5 5 H 1.48500 * 109.46738 * 30.00531 * 3 2 1 6 6 H 1.48501 * 109.46755 * 150.00275 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.82454 * 55.56757 * 15 13 12 17 17 C 1.54384 * 109.83205 * 294.58616 * 15 13 12 18 18 C 1.55299 * 102.25515 * 219.12898 * 17 15 13 19 19 C 1.54953 * 100.94173 * 34.13551 * 18 17 15 20 20 H 1.09006 * 110.30760 * 82.46722 * 19 18 17 21 21 C 1.52996 * 110.30869 * 204.63536 * 19 18 17 22 22 N 1.46903 * 109.47136 * 182.16359 * 21 19 18 23 23 O 1.43237 * 109.83014 * 176.45737 * 15 13 12 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 26 26 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 28 28 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 32 32 H 1.09001 * 110.84709 * 337.32474 * 17 15 13 33 33 H 1.08999 * 110.84388 * 100.93975 * 17 15 13 34 34 H 1.09000 * 111.12528 * 276.21817 * 18 17 15 35 35 H 1.09001 * 111.12411 * 152.05004 * 18 17 15 36 36 H 1.08994 * 109.47723 * 302.16907 * 21 19 18 37 37 H 1.09007 * 109.46976 * 62.17250 * 21 19 18 38 38 H 1.00902 * 110.99659 * 56.05018 * 22 21 19 39 39 H 1.00889 * 111.00128 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4321 -6.1007 -0.0006 13 6 1.9827 -7.3713 -0.0005 14 8 0.7904 -7.5929 -0.0013 15 6 2.9620 -8.5168 -0.0004 16 1 3.6429 -8.4210 0.8453 17 6 3.7616 -8.5224 -1.3210 18 6 3.8637 -10.0392 -1.6382 19 6 2.5043 -10.5457 -1.0935 20 1 1.7174 -10.3834 -1.8302 21 6 2.5968 -12.0294 -0.7317 22 7 1.2861 -12.5027 -0.2669 23 8 2.2555 -9.7600 0.0830 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 3.3857 -5.9234 -0.0002 32 1 3.2174 -7.9976 -2.1062 33 1 4.7512 -8.0887 -1.1771 34 1 4.6961 -10.4971 -1.1039 35 1 3.9456 -10.2115 -2.7114 36 1 2.8983 -12.5996 -1.6103 37 1 3.3337 -12.1651 0.0600 38 1 0.5726 -12.3287 -0.9588 39 1 1.3211 -13.4806 -0.0212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087047644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:50 Heat of formation + Delta-G solvation = -129.719302 kcal Electronic energy + Delta-G solvation = -18719.425545 eV Core-core repulsion = 15659.897043 eV Total energy + Delta-G solvation = -3059.528501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.41949 -39.61747 -36.95327 -35.48566 -35.22353 -33.44363 -32.78817 -30.77653 -28.54782 -26.26162 -24.67846 -23.07505 -22.32639 -22.28383 -21.05909 -18.64775 -18.50351 -17.61522 -17.43400 -16.82886 -16.59015 -16.41452 -15.79184 -15.62488 -15.28455 -14.81891 -14.65175 -14.26523 -13.95317 -13.73464 -13.56047 -13.13432 -12.91880 -12.74884 -12.62184 -12.55374 -12.38163 -11.94662 -11.93354 -11.68039 -11.57910 -11.26750 -11.15978 -10.55894 -10.31594 -10.12897 -9.54159 -8.19694 -6.31575 1.41844 1.43543 1.54509 1.55980 2.02096 2.42313 2.86430 3.14126 3.41821 3.56205 3.70990 3.92046 4.03158 4.14123 4.18472 4.20022 4.29115 4.47697 4.53478 4.60888 4.64334 4.84210 4.92594 4.94910 4.96996 5.00204 5.16309 5.21757 5.41633 5.52026 5.69655 5.83654 5.94475 6.21446 6.28654 6.59000 6.59591 6.86304 7.25123 7.38293 8.92650 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.058422 B = 0.003009 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.152813 B = 9303.158114 C = 9623.562446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.488 3.512 14 O -0.585 6.585 15 C 0.064 3.936 16 H 0.132 0.868 17 C -0.140 4.140 18 C -0.136 4.136 19 C 0.066 3.934 20 H 0.051 0.949 21 C 0.069 3.931 22 N -0.866 5.866 23 O -0.366 6.366 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.418 0.582 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.342 0.658 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.741 -23.360 -4.375 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.005 3.995 12 N -0.362 5.362 13 C 0.276 3.724 14 O -0.465 6.465 15 C 0.003 3.997 16 H 0.149 0.851 17 C -0.178 4.178 18 C -0.174 4.174 19 C 0.008 3.992 20 H 0.069 0.931 21 C -0.062 4.062 22 N -0.397 5.397 23 O -0.284 6.284 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.711 -22.964 -3.612 26.495 hybrid contribution -0.123 0.687 -0.852 1.101 sum 12.588 -22.278 -4.465 25.975 Atomic orbital electron populations 1.70123 1.08049 1.27819 1.51747 1.26062 0.95747 1.03696 0.94777 0.85386 0.78679 0.78120 0.78486 1.19739 1.21149 1.18278 1.21684 0.93816 0.91895 1.50392 0.91310 1.18955 0.94501 0.93158 0.94938 1.21587 0.98358 0.91413 1.02355 1.21227 0.92115 0.85843 1.00345 1.45917 1.11217 1.04662 1.74455 1.21918 0.90152 0.85150 0.75224 1.90688 1.19485 1.85411 1.50883 1.22854 0.91155 0.82954 1.02778 0.85075 1.23169 1.02117 0.98579 0.93940 1.23300 0.96557 0.93736 1.03821 1.23318 0.97206 0.92000 0.86635 0.93143 1.21939 0.91993 0.92128 1.00125 1.58538 1.06858 1.24887 1.49456 1.88634 1.71677 1.27104 1.41010 0.92823 0.99082 0.99202 0.91177 0.90964 0.93766 0.93517 0.74494 0.91131 0.85349 0.87617 0.87638 0.91626 0.90056 0.84511 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.13 4.71 5.67 86.38 0.49 5.20 16 12 N -0.71 -19.82 5.53 -463.05 -2.56 -22.38 16 13 C 0.49 15.31 7.03 87.66 0.62 15.93 16 14 O -0.59 -25.28 16.52 15.76 0.26 -25.02 16 15 C 0.06 1.38 3.95 30.32 0.12 1.50 16 16 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.14 -1.87 6.52 31.85 0.21 -1.66 16 18 C -0.14 -1.44 6.57 32.05 0.21 -1.22 16 19 C 0.07 1.23 3.62 31.26 0.11 1.34 16 20 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 21 C 0.07 0.99 6.50 86.30 0.56 1.55 16 22 N -0.87 -15.00 9.61 -186.72 -1.79 -16.80 16 23 O -0.37 -9.93 10.23 -130.19 -1.33 -11.26 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.42 8.18 8.47 -92.71 -0.79 7.40 16 32 H 0.07 1.15 7.84 -2.39 -0.02 1.14 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.70 8.06 -2.39 -0.02 0.68 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.34 5.68 8.99 -89.69 -0.81 4.87 16 39 H 0.35 4.32 9.08 -89.70 -0.81 3.51 16 Total: -1.00 -79.50 326.90 -1.14 -80.65 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -1.35 Total: 15.99 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 3.32 Total: -9.48 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.07 Total: -96.68 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.07 Total: -36.27 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -79.50 -1.14 -80.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087047644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.074 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds