Wall clock time and date at job start Mon Mar 30 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46606 * 2 1 4 4 H 1.08997 * 109.49868 * 55.00120 * 3 2 1 5 5 C 1.53042 * 109.49459 * 175.06336 * 3 2 1 6 6 C 1.53040 * 109.53823 * 181.34908 * 5 3 2 7 7 H 1.09000 * 109.49776 * 58.59108 * 6 5 3 8 8 N 1.46500 * 109.49867 * 178.68306 * 6 5 3 9 9 C 1.34777 * 120.00521 * 204.99963 * 8 6 5 10 10 O 1.21509 * 119.99441 * 0.02562 * 9 8 6 11 11 O 1.34626 * 120.00390 * 179.97438 * 9 8 6 12 12 C 1.45209 * 117.00087 * 179.97438 * 11 9 8 13 13 C 1.53190 * 109.31412 * 298.63505 * 6 5 3 14 14 N 1.46934 * 108.77412 * 54.63561 * 13 6 5 15 15 C 1.36926 * 120.62899 * 126.37303 * 14 13 6 16 16 H 1.08004 * 120.00294 * 332.45774 * 15 14 13 17 17 C 1.38814 * 120.00126 * 152.46459 * 15 14 13 18 18 N 1.31621 * 120.00337 * 159.33995 * 17 15 14 19 19 Si 1.86803 * 119.99933 * 339.34339 * 17 15 14 20 20 H 1.48501 * 109.47108 * 93.06343 * 19 17 15 21 21 H 1.48493 * 109.46880 * 213.06527 * 19 17 15 22 22 H 1.48504 * 109.46709 * 333.06442 * 19 17 15 23 23 C 1.46921 * 118.73484 * 306.39192 * 14 13 6 24 24 H 1.09003 * 109.46804 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47268 * 299.99975 * 1 2 3 26 26 H 1.09000 * 109.47135 * 60.00056 * 1 2 3 27 27 H 1.08998 * 109.47268 * 240.00025 * 2 1 3 28 28 H 1.09000 * 109.47135 * 119.99944 * 2 1 3 29 29 H 1.09005 * 109.45995 * 301.37119 * 5 3 2 30 30 H 1.08998 * 109.46145 * 61.34253 * 5 3 2 31 31 H 0.97005 * 119.99921 * 25.00311 * 8 6 5 32 32 H 1.08996 * 109.47143 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47137 * 300.00500 * 12 11 9 34 34 H 1.08996 * 109.46455 * 60.00698 * 12 11 9 35 35 H 1.08998 * 109.58703 * 174.42173 * 13 6 5 36 36 H 1.09001 * 109.58477 * 294.70504 * 13 6 5 37 37 H 0.97000 * 120.00453 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.59150 * 293.81871 * 23 14 13 39 39 H 1.09002 * 109.58718 * 173.39972 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6056 1.9820 0.8417 5 6 3.5653 1.4451 0.1241 6 6 4.0737 2.8882 0.1581 7 1 3.6202 3.4140 0.9983 8 7 5.5309 2.8899 0.3085 9 6 6.1508 3.9547 0.8548 10 8 5.5009 4.9131 1.2229 11 8 7.4899 3.9561 0.9935 12 6 8.0898 5.1366 1.5894 13 6 3.6938 3.5901 -1.1495 14 7 2.2434 3.4658 -1.3490 15 6 1.4716 4.5755 -1.5672 16 1 1.7797 5.5333 -1.1746 17 6 0.2930 4.4695 -2.2929 18 7 -0.6396 5.3904 -2.1718 19 14 0.0305 3.0198 -3.4413 20 1 -0.6856 1.9385 -2.7179 21 1 -0.7777 3.4536 -4.6091 22 1 1.3462 2.5150 -3.9099 23 6 1.6371 2.1281 -1.3094 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8557 0.9361 1.0433 30 1 4.0001 0.9272 -0.7307 31 1 6.0497 2.1247 0.0150 32 1 9.1708 5.0076 1.6421 33 1 7.8576 6.0095 0.9793 34 1 7.6912 5.2788 2.5939 35 1 3.9656 4.6440 -1.0908 36 1 4.2206 3.1227 -1.9815 37 1 -1.4633 5.3161 -2.6786 38 1 1.9942 1.5398 -2.1547 39 1 0.5518 2.2173 -1.3562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108170113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:21 Heat of formation + Delta-G solvation = -66.950612 kcal Electronic energy + Delta-G solvation = -20159.178727 eV Core-core repulsion = 17102.372080 eV Total energy + Delta-G solvation = -3056.806647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32142 -38.56014 -36.39621 -34.70138 -34.12807 -31.74079 -30.28454 -28.59695 -27.26497 -25.35529 -23.90506 -22.30625 -21.38246 -20.10303 -19.80339 -18.40972 -16.94929 -16.58171 -16.33236 -15.56884 -14.72530 -14.48546 -14.18973 -14.03471 -13.58897 -13.32250 -13.28027 -12.94103 -12.86559 -12.34695 -12.04439 -11.83750 -11.39690 -11.38150 -10.95676 -10.88190 -10.70270 -10.65699 -10.54553 -10.36282 -10.10784 -9.87671 -9.66750 -9.46280 -9.09446 -8.54327 -6.97331 -5.92416 -3.29322 2.33088 3.02350 3.30668 3.48598 3.51309 4.35217 4.53819 4.94209 5.02577 5.12916 5.18352 5.20922 5.28052 5.40409 5.45639 5.47094 5.59018 5.72945 5.83603 5.98109 5.99910 6.07412 6.23259 6.25605 6.27238 6.30781 6.48636 6.49141 6.55155 6.66382 6.70905 6.79119 6.94223 7.59944 7.97814 8.35810 8.52941 8.96051 9.73433 10.08862 11.23406 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.006774 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.101777 B = 4132.757980 C = 5052.339528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.103 4.103 4 H 0.077 0.923 5 C -0.111 4.111 6 C 0.141 3.859 7 H 0.093 0.907 8 N -0.701 5.701 9 C 0.642 3.358 10 O -0.565 6.565 11 O -0.379 6.379 12 C 0.058 3.942 13 C 0.141 3.859 14 N -0.600 5.600 15 C -0.259 4.259 16 H 0.087 0.913 17 C 0.025 3.975 18 N -0.906 5.906 19 Si 0.879 3.121 20 H -0.286 1.286 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.129 3.871 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.026 0.974 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.771 -9.908 5.768 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.095 0.905 5 C -0.149 4.149 6 C 0.037 3.963 7 H 0.112 0.888 8 N -0.359 5.359 9 C 0.394 3.606 10 O -0.452 6.452 11 O -0.294 6.294 12 C -0.037 4.037 13 C 0.014 3.986 14 N -0.323 5.323 15 C -0.388 4.388 16 H 0.105 0.895 17 C -0.174 4.174 18 N -0.549 5.549 19 Si 0.710 3.290 20 H -0.213 1.213 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.003 3.997 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.330 -9.261 5.913 16.515 hybrid contribution 0.038 -0.959 -0.778 1.235 sum 12.368 -10.220 5.135 16.846 Atomic orbital electron populations 1.21846 0.95904 1.00925 1.02730 1.21501 0.96048 0.96368 1.01251 1.21708 0.93633 0.95661 1.01351 0.90451 1.21749 0.96790 0.94903 1.01505 1.21763 0.75340 0.97456 1.01763 0.88843 1.44855 1.08453 1.18092 1.64543 1.18215 0.80744 0.83633 0.78050 1.91045 1.65536 1.34610 1.54052 1.86212 1.21317 1.44540 1.77291 1.23132 0.97116 0.85368 0.98114 1.21261 0.85260 0.99552 0.92537 1.44281 1.01686 1.02862 1.83514 1.18950 1.02531 0.88683 1.28588 0.89536 1.25256 0.96536 0.96904 0.98658 1.69841 1.06480 1.36020 1.42589 0.87011 0.77703 0.82690 0.81644 1.21333 1.23163 1.19610 1.21498 0.98589 0.86063 0.93520 0.93297 0.92560 0.92127 0.92328 0.92418 0.92111 0.91807 0.76465 0.88339 0.91833 0.92008 0.91330 0.95766 0.92767 0.95661 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.67 37.16 0.36 -1.91 16 2 C -0.11 -1.58 5.41 -26.73 -0.14 -1.72 16 3 C -0.10 -1.73 2.34 -90.50 -0.21 -1.94 16 4 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 5 C -0.11 -1.62 4.64 -26.69 -0.12 -1.74 16 6 C 0.14 2.40 2.60 -67.81 -0.18 2.22 16 7 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 8 N -0.70 -10.11 5.08 -58.62 -0.30 -10.41 16 9 C 0.64 10.43 8.72 54.06 0.47 10.90 16 10 O -0.56 -11.37 15.79 -19.28 -0.30 -11.68 16 11 O -0.38 -5.08 10.62 -40.29 -0.43 -5.51 16 12 C 0.06 0.59 10.56 101.05 1.07 1.65 16 13 C 0.14 2.91 6.09 -3.71 -0.02 2.89 16 14 N -0.60 -14.40 2.77 -172.32 -0.48 -14.88 16 15 C -0.26 -7.41 10.03 -15.06 -0.15 -7.56 16 16 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 17 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 18 N -0.91 -28.07 13.97 55.49 0.78 -27.30 16 19 Si 0.88 22.28 24.35 -169.99 -4.14 18.14 16 20 H -0.29 -6.83 6.40 56.52 0.36 -6.47 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.27 -6.75 6.64 56.52 0.38 -6.38 16 23 C 0.13 2.73 3.10 -3.72 -0.01 2.72 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.02 6.48 -51.93 -0.34 0.68 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 4.50 8.71 -40.82 -0.36 4.15 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.03 0.53 7.08 -51.93 -0.37 0.17 16 39 H 0.08 1.82 3.24 -51.93 -0.17 1.65 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -33.04 308.05 -5.57 -38.61 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.31 Total: 2.22 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.97 Total: 6.16 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.00 Total: -52.58 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.73 Total: -17.18 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.04 -5.57 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108170113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.336 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds