Wall clock time and date at job start Mon Mar 30 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48505 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47399 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.46964 * 60.00286 * 3 2 1 7 7 C 1.38950 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99720 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00314 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99531 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46713 * 180.02562 * 12 10 9 14 14 C 1.42904 * 113.99966 * 179.97438 * 13 12 10 15 15 H 1.08998 * 108.77039 * 328.51220 * 14 13 12 16 16 C 1.54070 * 108.87800 * 87.02070 * 14 13 12 17 17 C 1.54066 * 112.81704 * 162.49549 * 16 14 13 18 18 C 1.50473 * 112.49486 * 41.72043 * 17 16 14 19 19 C 1.54240 * 108.52232 * 265.84689 * 18 17 16 20 20 C 1.45533 * 112.40507 * 79.98993 * 19 18 17 21 21 C 1.50471 * 108.88098 * 210.00241 * 14 13 12 22 22 H 1.08999 * 109.79043 * 264.87464 * 21 14 13 23 23 N 1.46905 * 109.62821 * 25.35882 * 21 14 13 24 24 H 0.96999 * 120.00034 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99937 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47239 * 60.00393 * 12 10 9 27 27 H 1.08998 * 109.46862 * 299.99479 * 12 10 9 28 28 H 1.08994 * 108.80747 * 41.63525 * 16 14 13 29 29 H 1.09001 * 108.72558 * 283.29704 * 16 14 13 30 30 H 1.08999 * 108.87781 * 280.94468 * 17 16 14 31 31 H 1.09000 * 108.79531 * 162.43889 * 17 16 14 32 32 H 1.09004 * 109.62528 * 146.14202 * 18 17 16 33 33 H 1.08995 * 109.79179 * 25.65021 * 18 17 16 34 34 H 1.09002 * 108.89600 * 319.23474 * 19 18 17 35 35 H 1.08998 * 108.81673 * 200.69261 * 19 18 17 36 36 H 1.09006 * 108.89510 * 177.31072 * 20 19 18 37 37 H 1.09007 * 108.82167 * 58.76520 * 20 19 18 38 38 H 1.00901 * 110.99869 * 179.03257 * 23 21 14 39 39 H 1.00896 * 110.99543 * 302.98379 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 8 2.1722 -5.9491 -0.0027 14 6 1.5577 -7.2392 -0.0026 15 1 0.6125 -7.1775 0.5367 16 6 1.2744 -7.6564 -1.4585 17 6 1.0193 -9.1685 -1.6078 18 6 0.1541 -9.7179 -0.5060 19 6 1.0690 -10.2727 0.6049 20 6 1.5869 -9.2248 1.4719 21 6 2.4617 -8.2092 0.7088 22 1 3.0838 -8.7338 -0.0163 23 7 3.3160 -7.4825 1.6577 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8920 27 1 0.6174 -4.9213 0.8881 28 1 2.1298 -7.3816 -2.0755 29 1 0.3973 -7.1152 -1.8133 30 1 1.9762 -9.6903 -1.5981 31 1 0.5290 -9.3491 -2.5644 32 1 -0.4730 -10.5188 -0.8978 33 1 -0.4748 -8.9254 -0.1006 34 1 1.9070 -10.7955 0.1438 35 1 0.5004 -10.9807 1.2078 36 1 2.1840 -9.6823 2.2608 37 1 0.7478 -8.6972 1.9257 38 1 3.9207 -8.1163 2.1584 39 1 3.8509 -6.7674 1.1881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131207718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:39 Heat of formation + Delta-G solvation = -95.986003 kcal Electronic energy + Delta-G solvation = -19612.415076 eV Core-core repulsion = 16554.349360 eV Total energy + Delta-G solvation = -3058.065716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69902 -38.10773 -36.32889 -33.98768 -33.82395 -31.87460 -31.20654 -29.01271 -27.46905 -24.65399 -23.96310 -23.61741 -20.68822 -19.40245 -19.28198 -17.91048 -16.67308 -16.22270 -15.78860 -15.43298 -14.68608 -14.51465 -14.45523 -14.16915 -13.93393 -13.75189 -13.41734 -13.18319 -12.76745 -12.25306 -12.11627 -11.84891 -11.51796 -11.21029 -11.09194 -10.98235 -10.85772 -10.66298 -10.51344 -10.33244 -10.30976 -10.20369 -9.50773 -9.13146 -8.40171 -8.29296 -7.94887 -6.39614 -3.80452 3.18610 3.28801 3.36096 3.74918 3.92535 4.26001 4.35792 4.50238 4.77947 4.91615 5.01062 5.03914 5.10861 5.21475 5.26739 5.30363 5.36547 5.59319 5.61417 5.73756 5.78181 5.85750 5.93463 5.98191 6.00374 6.03891 6.09245 6.17410 6.24863 6.28220 6.32170 7.32368 7.57810 7.60608 7.76615 8.08631 8.63908 9.20221 9.55172 10.07159 10.78406 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042718 B = 0.004068 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.301586 B = 6881.602596 C = 7158.860934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.058 3.942 13 O -0.348 6.348 14 C 0.096 3.904 15 H 0.059 0.941 16 C -0.145 4.145 17 C -0.115 4.115 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.112 4.112 21 C 0.102 3.898 22 H 0.038 0.962 23 N -0.837 5.837 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.331 0.669 39 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -18.807 -0.386 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.022 4.022 13 O -0.265 6.265 14 C 0.037 3.963 15 H 0.077 0.923 16 C -0.183 4.183 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.010 4.010 22 H 0.056 0.944 23 N -0.370 5.370 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.143 0.857 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.562 -18.384 -0.049 18.451 hybrid contribution 0.135 0.473 -0.629 0.799 sum -1.427 -17.911 -0.678 17.980 Atomic orbital electron populations 1.69621 1.05945 1.28054 1.50769 1.25259 0.95648 0.99695 0.97348 0.85784 0.79727 0.81060 0.77687 1.19184 1.20762 1.20733 1.19756 0.93425 0.82038 1.47460 0.87800 1.41760 1.09188 1.04312 1.64812 1.19573 0.88380 0.84341 0.84630 1.90528 1.13713 1.87011 1.54661 1.22159 0.91984 0.87628 1.00466 1.87959 1.31739 1.12062 1.94722 1.21972 0.96046 0.84170 0.94126 0.92321 1.22488 1.02436 0.95847 0.97525 1.21279 1.00015 0.95273 0.98651 1.21401 0.97969 1.00492 0.96081 1.20504 0.99272 0.98188 0.97610 1.20501 0.99817 0.96431 0.98287 1.21065 0.94333 0.92869 0.92692 0.94394 1.58529 1.29548 1.17384 1.31570 0.91924 0.77433 0.92330 0.91932 0.91033 0.91887 0.92058 0.92124 0.91907 0.91454 0.92245 0.92091 0.91735 0.91502 0.85717 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 9 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 10 C 0.45 11.14 7.86 -10.98 -0.09 11.05 16 11 O -0.58 -16.59 16.08 -14.36 -0.23 -16.82 16 12 C 0.06 1.11 6.19 36.01 0.22 1.34 16 13 O -0.35 -6.46 7.76 -55.14 -0.43 -6.89 16 14 C 0.10 1.35 2.03 -27.44 -0.06 1.29 16 15 H 0.06 0.80 6.26 -51.93 -0.32 0.48 16 16 C -0.14 -1.77 5.36 -25.62 -0.14 -1.90 16 17 C -0.11 -1.09 5.31 -27.44 -0.15 -1.24 16 18 C -0.12 -1.05 5.60 -27.34 -0.15 -1.21 16 19 C -0.12 -1.00 5.26 -29.60 -0.16 -1.15 16 20 C -0.11 -1.14 4.90 -29.60 -0.14 -1.29 16 21 C 0.10 1.28 2.87 -68.32 -0.20 1.08 16 22 H 0.04 0.46 7.00 -51.93 -0.36 0.10 16 23 N -0.84 -11.69 8.92 -5.19 -0.05 -11.73 16 24 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 26 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 27 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.06 0.57 6.64 -51.93 -0.34 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 6.99 -51.93 -0.36 0.26 16 34 H 0.06 0.48 7.47 -51.93 -0.39 0.09 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.07 0.73 7.47 -51.92 -0.39 0.35 16 38 H 0.33 3.75 8.96 -39.29 -0.35 3.39 16 39 H 0.36 5.89 7.80 -39.29 -0.31 5.58 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -31.79 309.29 -7.52 -39.31 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.03 Total: 14.21 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.09 Total: -0.15 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.62 Total: -50.60 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.66 Total: -23.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.79 -7.52 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131207718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.672 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds