Wall clock time and date at job start Mon Mar 30 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48505 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47399 * 300.00044 * 3 2 1 6 6 H 1.48500 * 109.46964 * 60.00286 * 3 2 1 7 7 C 1.38950 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99720 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00314 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99531 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46713 * 180.02562 * 12 10 9 14 14 C 1.42904 * 113.99966 * 179.97438 * 13 12 10 15 15 H 1.08998 * 108.77039 * 328.51220 * 14 13 12 16 16 C 1.54070 * 108.87800 * 87.02070 * 14 13 12 17 17 C 1.54066 * 112.81704 * 162.49549 * 16 14 13 18 18 C 1.50473 * 112.49486 * 41.72043 * 17 16 14 19 19 C 1.54240 * 108.52232 * 265.84689 * 18 17 16 20 20 C 1.45533 * 112.40507 * 79.98993 * 19 18 17 21 21 C 1.50471 * 108.88098 * 210.00241 * 14 13 12 22 22 H 1.08999 * 109.79043 * 264.87464 * 21 14 13 23 23 N 1.46905 * 109.62821 * 25.35882 * 21 14 13 24 24 H 0.96999 * 120.00034 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99937 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47239 * 60.00393 * 12 10 9 27 27 H 1.08998 * 109.46862 * 299.99479 * 12 10 9 28 28 H 1.08994 * 108.80747 * 41.63525 * 16 14 13 29 29 H 1.09001 * 108.72558 * 283.29704 * 16 14 13 30 30 H 1.08999 * 108.87781 * 280.94468 * 17 16 14 31 31 H 1.09000 * 108.79531 * 162.43889 * 17 16 14 32 32 H 1.09004 * 109.62528 * 146.14202 * 18 17 16 33 33 H 1.08995 * 109.79179 * 25.65021 * 18 17 16 34 34 H 1.09002 * 108.89600 * 319.23474 * 19 18 17 35 35 H 1.08998 * 108.81673 * 200.69261 * 19 18 17 36 36 H 1.09006 * 108.89510 * 177.31072 * 20 19 18 37 37 H 1.09007 * 108.82167 * 58.76520 * 20 19 18 38 38 H 1.00901 * 110.99869 * 179.03257 * 23 21 14 39 39 H 1.00896 * 110.99543 * 302.98379 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 8 2.1722 -5.9491 -0.0027 14 6 1.5577 -7.2392 -0.0026 15 1 0.6125 -7.1775 0.5367 16 6 1.2744 -7.6564 -1.4585 17 6 1.0193 -9.1685 -1.6078 18 6 0.1541 -9.7179 -0.5060 19 6 1.0690 -10.2727 0.6049 20 6 1.5869 -9.2248 1.4719 21 6 2.4617 -8.2092 0.7088 22 1 3.0838 -8.7338 -0.0163 23 7 3.3160 -7.4825 1.6577 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8920 27 1 0.6174 -4.9213 0.8881 28 1 2.1298 -7.3816 -2.0755 29 1 0.3973 -7.1152 -1.8133 30 1 1.9762 -9.6903 -1.5981 31 1 0.5290 -9.3491 -2.5644 32 1 -0.4730 -10.5188 -0.8978 33 1 -0.4748 -8.9254 -0.1006 34 1 1.9070 -10.7955 0.1438 35 1 0.5004 -10.9807 1.2078 36 1 2.1840 -9.6823 2.2608 37 1 0.7478 -8.6972 1.9257 38 1 3.9207 -8.1163 2.1584 39 1 3.8509 -6.7674 1.1881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131207718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:38 Heat of formation + Delta-G solvation = -118.754363 kcal Electronic energy + Delta-G solvation = -19613.402386 eV Core-core repulsion = 16554.349360 eV Total energy + Delta-G solvation = -3059.053026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82284 -39.91457 -37.62535 -35.95702 -34.90405 -33.33841 -32.78360 -30.10102 -29.04651 -26.41637 -25.11672 -24.51507 -21.66588 -21.11916 -20.32752 -19.98803 -18.07726 -17.51685 -17.11481 -16.86235 -16.34694 -16.18200 -15.72978 -15.32981 -15.02489 -14.79802 -14.71199 -14.49676 -14.17424 -13.66002 -13.52994 -13.19207 -12.96085 -12.80321 -12.43448 -12.31905 -12.11042 -12.06598 -11.67479 -11.54699 -11.41717 -11.27647 -11.23742 -10.41399 -10.32763 -10.05109 -9.46756 -8.49000 -5.98545 1.36317 1.41996 1.56582 1.98104 2.19917 2.49892 3.17172 3.41602 3.47006 3.69342 3.97027 4.06718 4.10592 4.18376 4.23177 4.26324 4.37499 4.40357 4.42769 4.50966 4.73206 4.78862 4.94540 5.05990 5.09888 5.21200 5.29739 5.31608 5.35578 5.39402 5.43709 5.54397 5.91954 6.18428 6.40416 6.58488 6.67829 7.09325 7.49515 8.05261 8.68783 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042718 B = 0.004068 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.301586 B = 6881.602596 C = 7158.860934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.567 5.567 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.072 3.928 13 O -0.373 6.373 14 C 0.091 3.909 15 H 0.064 0.936 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.104 4.104 21 C 0.100 3.900 22 H 0.041 0.959 23 N -0.849 5.849 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.344 0.656 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -19.807 -0.434 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.205 5.205 10 C 0.225 3.775 11 O -0.508 6.508 12 C -0.008 4.008 13 O -0.291 6.291 14 C 0.033 3.967 15 H 0.082 0.918 16 C -0.180 4.180 17 C -0.147 4.147 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.011 4.011 22 H 0.059 0.941 23 N -0.381 5.381 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.711 -19.417 -0.089 19.606 hybrid contribution 0.470 0.745 -0.608 1.070 sum -2.241 -18.672 -0.697 18.819 Atomic orbital electron populations 1.69674 1.06854 1.29427 1.49979 1.26068 0.96584 1.02411 0.95975 0.84837 0.77982 0.76827 0.78472 1.19838 1.19363 1.19406 1.19716 0.92750 0.83803 1.50277 0.90321 1.41803 1.09366 1.04381 1.64972 1.20585 0.88204 0.85894 0.82771 1.90488 1.15954 1.87954 1.56373 1.21950 0.91261 0.85083 1.02493 1.87941 1.32680 1.13439 1.95052 1.22280 0.96421 0.82391 0.95630 0.91790 1.22464 1.01691 0.98083 0.95794 1.21262 1.00620 0.93004 0.99786 1.21414 0.97887 1.00848 0.95733 1.20496 0.99647 0.97766 0.97524 1.20464 0.99115 0.96146 0.98509 1.21192 0.94324 0.92839 0.92793 0.94073 1.58555 1.29852 1.17744 1.31959 0.91123 0.76791 0.89821 0.89990 0.92781 0.91737 0.91772 0.90904 0.90094 0.92102 0.91598 0.90475 0.90965 0.92287 0.84286 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.94 13.05 21.66 0.28 -49.65 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.34 -19.61 9.68 84.04 0.81 -18.80 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.23 5.29 -306.98 -1.62 -31.86 16 10 C 0.44 22.39 7.86 87.66 0.69 23.08 16 11 O -0.62 -37.14 16.08 15.97 0.26 -36.89 16 12 C 0.07 2.75 6.19 71.24 0.44 3.19 16 13 O -0.37 -13.91 7.76 -129.94 -1.01 -14.92 16 14 C 0.09 2.47 2.03 30.14 0.06 2.53 16 15 H 0.06 1.66 6.26 -2.39 -0.01 1.65 16 16 C -0.14 -3.31 5.36 31.32 0.17 -3.14 16 17 C -0.11 -1.83 5.31 30.14 0.16 -1.67 16 18 C -0.12 -1.75 5.60 30.20 0.17 -1.58 16 19 C -0.12 -1.63 5.26 28.73 0.15 -1.48 16 20 C -0.10 -1.92 4.90 28.73 0.14 -1.78 16 21 C 0.10 2.41 2.87 44.52 0.13 2.53 16 22 H 0.04 0.96 7.00 -2.39 -0.02 0.95 16 23 N -0.85 -23.58 8.92 -170.33 -1.52 -25.10 16 24 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 26 H 0.08 2.75 8.05 -2.39 -0.02 2.74 16 27 H 0.08 2.80 8.07 -2.39 -0.02 2.78 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 30 H 0.06 1.05 6.64 -2.39 -0.02 1.04 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 0.98 6.99 -2.39 -0.02 0.96 16 34 H 0.07 0.87 7.47 -2.39 -0.02 0.85 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.22 8.03 -2.38 -0.02 1.20 16 37 H 0.06 1.19 7.47 -2.38 -0.02 1.17 16 38 H 0.34 7.64 8.96 -89.69 -0.80 6.83 16 39 H 0.35 11.57 7.80 -89.70 -0.70 10.87 16 Total: -1.00 -69.09 309.29 0.64 -68.44 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -1.16 Total: 41.79 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 3.39 Total: 2.78 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -2.86 Total: -106.60 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.75 Total: -51.81 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.09 0.64 -68.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131207718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.311 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds