Wall clock time and date at job start Mon Mar 30 2020 04:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00562 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99914 * 179.97438 * 11 10 9 14 14 N 1.46893 * 109.47264 * 179.97438 * 13 11 10 15 15 C 1.47449 * 110.99960 * 69.87161 * 14 13 11 16 16 C 1.54324 * 107.23178 * 123.25738 * 15 14 13 17 17 C 1.55139 * 103.01927 * 22.28420 * 16 15 14 18 18 H 1.09004 * 110.99296 * 82.47608 * 17 16 15 19 19 C 1.53004 * 110.98899 * 206.25554 * 17 16 15 20 20 C 1.52998 * 109.47132 * 293.54481 * 19 17 16 21 21 O 1.42898 * 109.47314 * 180.02562 * 20 19 17 22 22 C 1.47846 * 110.99948 * 190.71314 * 14 13 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 0.97000 * 119.99666 * 359.97438 * 10 9 7 27 27 H 1.09005 * 109.46877 * 299.99952 * 13 11 10 28 28 H 1.09002 * 109.46993 * 59.99605 * 13 11 10 29 29 H 1.08998 * 109.89001 * 242.65929 * 15 14 13 30 30 H 1.08999 * 109.88549 * 3.69255 * 15 14 13 31 31 H 1.08998 * 110.70632 * 140.66688 * 16 15 14 32 32 H 1.09004 * 110.70438 * 263.72549 * 16 15 14 33 33 H 1.08991 * 109.47271 * 53.54720 * 19 17 16 34 34 H 1.09005 * 109.46930 * 173.54871 * 19 17 16 35 35 H 1.09005 * 109.47063 * 300.00191 * 20 19 17 36 36 H 1.08997 * 109.47106 * 59.99726 * 20 19 17 37 37 H 0.96702 * 114.00041 * 179.97438 * 21 20 19 38 38 H 1.08997 * 110.37264 * 332.46763 * 22 14 13 39 39 H 1.09000 * 110.37202 * 94.81192 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 5.3249 -2.8216 -0.0016 12 8 6.1131 -1.8998 -0.0012 13 6 5.8273 -4.2425 -0.0024 14 7 7.2962 -4.2425 -0.0032 15 6 7.8253 -3.7693 1.2892 16 6 8.7441 -4.8796 1.8412 17 6 9.1323 -5.6770 0.5683 18 1 9.9579 -5.1966 0.0432 19 6 9.4760 -7.1273 0.9137 20 6 10.7517 -7.1620 1.7575 21 8 11.0731 -8.5166 2.0797 22 6 7.8259 -5.5986 -0.2606 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.3695 -3.3126 -0.0020 27 1 5.4640 -4.7568 0.8874 28 1 5.4638 -4.7558 -0.8926 29 1 8.3976 -2.8533 1.1426 30 1 7.0036 -3.5862 1.9816 31 1 9.6285 -4.4497 2.3113 32 1 8.2038 -5.5121 2.5456 33 1 8.6553 -7.5708 1.4774 34 1 9.6327 -7.6923 -0.0052 35 1 11.5725 -6.7185 1.1937 36 1 10.5951 -6.5970 2.6764 37 1 11.8729 -8.6146 2.6144 38 1 7.1161 -6.3536 0.0774 39 1 8.0413 -5.7268 -1.3214 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161582236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:38 Heat of formation + Delta-G solvation = -91.278019 kcal Electronic energy + Delta-G solvation = -18829.824840 eV Core-core repulsion = 15771.963278 eV Total energy + Delta-G solvation = -3057.861562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77910 -38.38117 -37.12783 -34.29491 -33.64248 -32.33635 -30.35825 -28.78871 -27.87561 -25.68399 -23.02035 -22.16148 -20.92331 -20.50034 -19.64298 -17.70898 -17.15954 -16.55089 -15.95864 -15.79525 -15.42234 -14.81434 -14.57311 -14.27712 -14.02519 -13.62060 -13.24553 -13.16829 -12.55527 -12.50506 -12.35825 -12.10101 -11.95517 -11.73512 -11.23084 -11.13458 -10.97296 -10.86770 -10.76550 -10.74169 -10.30561 -9.96007 -9.48680 -9.14843 -8.76769 -8.26123 -8.09501 -6.20973 -4.23022 3.26329 3.30161 3.33925 3.43273 3.56590 3.87357 4.19370 4.34247 4.47002 4.53823 4.69218 4.82747 4.95924 5.11647 5.14315 5.18451 5.26605 5.30497 5.39498 5.46587 5.51177 5.58530 5.62996 5.68959 5.77446 5.93854 6.04111 6.23260 6.79593 6.96090 6.98169 7.09510 7.23176 7.27310 7.41493 8.16485 8.54664 8.76794 8.99853 9.39561 10.91003 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.060257 B = 0.003250 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.563439 B = 8612.310900 C = 8803.055288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.710 5.710 11 C 0.500 3.500 12 O -0.540 6.540 13 C 0.031 3.969 14 N -0.511 5.511 15 C 0.052 3.948 16 C -0.141 4.141 17 C -0.094 4.094 18 H 0.087 0.913 19 C -0.109 4.109 20 C 0.075 3.925 21 O -0.578 6.578 22 C 0.048 3.952 23 H 0.267 0.733 24 H 0.025 0.975 25 H 0.019 0.981 26 H 0.395 0.605 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.379 0.621 38 H 0.048 0.952 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.361 -14.688 3.456 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.359 5.359 11 C 0.284 3.716 12 O -0.418 6.418 13 C -0.101 4.101 14 N -0.235 5.235 15 C -0.075 4.075 16 C -0.180 4.180 17 C -0.114 4.114 18 H 0.106 0.894 19 C -0.147 4.147 20 C -0.002 4.002 21 O -0.383 6.383 22 C -0.079 4.079 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.228 0.772 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.226 0.774 38 H 0.067 0.933 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.337 -13.631 2.702 23.812 hybrid contribution 0.095 0.169 0.984 1.003 sum 19.432 -13.463 3.686 23.925 Atomic orbital electron populations 1.69885 1.06218 1.27411 1.49529 1.24807 0.94797 0.99204 0.93882 0.86806 0.80613 0.83195 0.79015 1.19896 1.18454 1.20911 1.21105 0.88582 0.95194 1.53213 0.90289 1.19457 0.95127 0.78725 0.96682 1.46171 1.05669 1.10956 1.73135 1.20361 0.83032 0.90638 0.77583 1.90644 1.55405 1.45964 1.49765 1.22209 0.89298 0.95857 1.02715 1.63268 1.05924 1.21978 1.32293 1.22771 0.97896 0.98038 0.88831 1.22957 1.00098 0.97692 0.97229 1.22235 0.98235 0.94548 0.96335 0.89441 1.21452 0.96965 0.96019 1.00258 1.22213 0.97036 0.82777 0.98218 1.86469 1.49198 1.27146 1.75491 1.23088 0.94813 0.89444 1.00593 0.92279 0.95741 0.96318 0.77165 0.92141 0.88261 0.89840 0.92775 0.90813 0.91439 0.91150 0.90941 0.93619 0.93461 0.77433 0.93321 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.53 4.50 -5.19 -0.02 5.51 16 10 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 11 C 0.50 9.63 7.47 -10.98 -0.08 9.54 16 12 O -0.54 -12.46 15.54 5.56 0.09 -12.37 16 13 C 0.03 0.43 5.03 -4.98 -0.03 0.41 16 14 N -0.51 -7.05 4.85 -232.68 -1.13 -8.18 16 15 C 0.05 0.69 5.65 -2.83 -0.02 0.67 16 16 C -0.14 -1.34 5.58 -24.91 -0.14 -1.48 16 17 C -0.09 -0.83 3.07 -88.48 -0.27 -1.10 16 18 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.11 -0.87 5.10 -26.73 -0.14 -1.01 16 20 C 0.08 0.54 6.90 37.16 0.26 0.80 16 21 O -0.58 -4.63 13.66 -35.23 -0.48 -5.11 16 22 C 0.05 0.50 6.15 -2.30 -0.01 0.48 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 25 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 26 H 0.40 7.04 8.32 -40.82 -0.34 6.70 16 27 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 28 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.31 7.50 -51.93 -0.39 -0.08 16 37 H 0.38 1.30 9.12 45.56 0.42 1.72 16 38 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -33.84 318.41 -7.49 -41.33 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.64 Total: 2.68 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.89 Total: 0.57 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.70 Total: -48.87 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.39 Total: -17.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.84 -7.49 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161582236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.948 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds