Wall clock time and date at job start Mon Mar 30 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99778 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00562 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99914 * 179.97438 * 11 10 9 14 14 N 1.46893 * 109.47264 * 179.97438 * 13 11 10 15 15 C 1.47449 * 110.99960 * 69.87161 * 14 13 11 16 16 C 1.54324 * 107.23178 * 123.25738 * 15 14 13 17 17 C 1.55139 * 103.01927 * 22.28420 * 16 15 14 18 18 H 1.09004 * 110.99296 * 82.47608 * 17 16 15 19 19 C 1.53004 * 110.98899 * 206.25554 * 17 16 15 20 20 C 1.52998 * 109.47132 * 293.54481 * 19 17 16 21 21 O 1.42898 * 109.47314 * 180.02562 * 20 19 17 22 22 C 1.47846 * 110.99948 * 190.71314 * 14 13 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 0.97000 * 119.99666 * 359.97438 * 10 9 7 27 27 H 1.09005 * 109.46877 * 299.99952 * 13 11 10 28 28 H 1.09002 * 109.46993 * 59.99605 * 13 11 10 29 29 H 1.08998 * 109.89001 * 242.65929 * 15 14 13 30 30 H 1.08999 * 109.88549 * 3.69255 * 15 14 13 31 31 H 1.08998 * 110.70632 * 140.66688 * 16 15 14 32 32 H 1.09004 * 110.70438 * 263.72549 * 16 15 14 33 33 H 1.08991 * 109.47271 * 53.54720 * 19 17 16 34 34 H 1.09005 * 109.46930 * 173.54871 * 19 17 16 35 35 H 1.09005 * 109.47063 * 300.00191 * 20 19 17 36 36 H 1.08997 * 109.47106 * 59.99726 * 20 19 17 37 37 H 0.96702 * 114.00041 * 179.97438 * 21 20 19 38 38 H 1.08997 * 110.37264 * 332.46763 * 22 14 13 39 39 H 1.09000 * 110.37202 * 94.81192 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 5.3249 -2.8216 -0.0016 12 8 6.1131 -1.8998 -0.0012 13 6 5.8273 -4.2425 -0.0024 14 7 7.2962 -4.2425 -0.0032 15 6 7.8253 -3.7693 1.2892 16 6 8.7441 -4.8796 1.8412 17 6 9.1323 -5.6770 0.5683 18 1 9.9579 -5.1966 0.0432 19 6 9.4760 -7.1273 0.9137 20 6 10.7517 -7.1620 1.7575 21 8 11.0731 -8.5166 2.0797 22 6 7.8259 -5.5986 -0.2606 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.3695 -3.3126 -0.0020 27 1 5.4640 -4.7568 0.8874 28 1 5.4638 -4.7558 -0.8926 29 1 8.3976 -2.8533 1.1426 30 1 7.0036 -3.5862 1.9816 31 1 9.6285 -4.4497 2.3113 32 1 8.2038 -5.5121 2.5456 33 1 8.6553 -7.5708 1.4774 34 1 9.6327 -7.6923 -0.0052 35 1 11.5725 -6.7185 1.1937 36 1 10.5951 -6.5970 2.6764 37 1 11.8729 -8.6146 2.6144 38 1 7.1161 -6.3536 0.0774 39 1 8.0413 -5.7268 -1.3214 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161582236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:37 Heat of formation + Delta-G solvation = -119.827602 kcal Electronic energy + Delta-G solvation = -18831.062843 eV Core-core repulsion = 15771.963278 eV Total energy + Delta-G solvation = -3059.099565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96870 -39.61904 -37.76401 -36.12682 -34.55974 -34.37679 -31.35927 -30.19407 -29.09318 -26.87519 -24.02134 -23.67799 -22.07717 -21.47401 -20.95224 -19.08861 -18.24749 -17.61839 -17.39866 -17.23313 -16.36898 -16.10879 -15.97453 -15.70838 -14.98411 -14.78366 -14.51885 -14.44871 -14.30191 -13.78839 -13.57987 -13.14588 -13.03179 -12.92751 -12.68963 -12.51948 -12.12484 -11.94681 -11.89255 -11.66455 -11.55342 -11.53008 -10.92714 -10.82669 -10.73619 -9.90970 -9.26330 -8.41021 -6.47846 1.31611 1.33996 1.46992 1.76698 2.26896 2.32347 2.94276 3.06650 3.28526 3.66601 3.76893 3.97205 3.99422 4.19702 4.30799 4.37424 4.38682 4.41195 4.55307 4.58223 4.70333 4.79279 4.83934 4.92491 4.96560 5.02497 5.03000 5.19249 5.24984 5.25597 5.42198 5.53763 5.91916 6.03113 6.11704 6.53271 6.88271 6.91205 7.15574 7.45553 8.73703 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.060257 B = 0.003250 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.563439 B = 8612.310900 C = 8803.055288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.234 3.766 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.581 6.581 13 C 0.043 3.957 14 N -0.535 5.535 15 C 0.051 3.949 16 C -0.131 4.131 17 C -0.084 4.084 18 H 0.088 0.912 19 C -0.104 4.104 20 C 0.074 3.926 21 O -0.598 6.598 22 C 0.047 3.953 23 H 0.272 0.728 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.408 0.592 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.397 0.603 38 H 0.063 0.937 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.874 -15.811 3.690 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.360 5.360 11 C 0.284 3.716 12 O -0.461 6.461 13 C -0.088 4.088 14 N -0.260 5.260 15 C -0.077 4.077 16 C -0.169 4.169 17 C -0.103 4.103 18 H 0.106 0.894 19 C -0.142 4.142 20 C -0.004 4.004 21 O -0.407 6.407 22 C -0.079 4.079 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.244 0.756 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.864 -14.800 2.945 25.749 hybrid contribution -0.368 0.457 0.905 1.079 sum 20.495 -14.343 3.850 25.311 Atomic orbital electron populations 1.69982 1.07653 1.28614 1.50723 1.25609 0.95556 1.02683 0.93608 0.85849 0.79194 0.79353 0.79433 1.18973 1.18659 1.19739 1.21300 0.89952 0.94594 1.52561 0.92203 1.19044 0.93292 0.81205 0.95420 1.46032 1.06804 1.09601 1.73572 1.21305 0.81902 0.92651 0.75695 1.90624 1.56210 1.47906 1.51328 1.22138 0.89786 0.91927 1.04978 1.63188 1.05654 1.24390 1.32732 1.22698 0.97798 0.98528 0.88676 1.22892 0.99842 0.96570 0.97607 1.22146 0.97542 0.95064 0.95564 0.89379 1.21377 0.97338 0.95037 1.00402 1.22229 0.96925 0.82678 0.98532 1.86413 1.50606 1.27570 1.76110 1.23176 0.95637 0.87842 1.01292 0.91832 0.97241 0.97306 0.75628 0.89736 0.85779 0.92331 0.94297 0.89526 0.90588 0.91568 0.90920 0.92704 0.92797 0.75332 0.91921 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -12.48 6.54 99.48 0.65 -11.82 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.55 -30.44 9.83 25.60 0.25 -30.19 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.69 4.50 85.63 0.38 12.08 16 10 N -0.71 -28.62 5.55 -466.77 -2.59 -31.21 16 11 C 0.50 18.83 7.47 87.66 0.66 19.49 16 12 O -0.58 -26.90 15.54 -3.03 -0.05 -26.95 16 13 C 0.04 1.12 5.03 85.56 0.43 1.55 16 14 N -0.53 -13.92 4.85 -890.06 -4.32 -18.24 16 15 C 0.05 1.30 5.65 86.65 0.49 1.79 16 16 C -0.13 -2.22 5.58 31.78 0.18 -2.04 16 17 C -0.08 -1.28 3.07 -9.41 -0.03 -1.31 16 18 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 19 C -0.10 -1.39 5.10 30.59 0.16 -1.23 16 20 C 0.07 0.88 6.90 71.98 0.50 1.37 16 21 O -0.60 -8.24 13.66 -148.98 -2.03 -10.28 16 22 C 0.05 0.86 6.15 86.77 0.53 1.39 16 23 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 25 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 26 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 27 H 0.08 1.84 7.96 -2.38 -0.02 1.82 16 28 H 0.12 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.08 7.31 -2.39 -0.02 1.07 16 31 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.08 1.18 8.02 -2.38 -0.02 1.17 16 33 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 34 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.05 0.56 7.50 -2.39 -0.02 0.55 16 37 H 0.40 1.88 9.12 -74.06 -0.68 1.20 16 38 H 0.06 0.98 7.70 -2.39 -0.02 0.96 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -72.73 318.41 -3.26 -75.98 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.46 Total: 14.95 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.01 Total: 4.83 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -6.61 Total: -105.06 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -2.08 Total: -37.23 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -72.73 -3.26 -75.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161582236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.844 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds