Wall clock time and date at job start Mon Mar 30 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47192 * 270.00316 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99463 * 3 2 1 6 6 H 1.48497 * 109.47462 * 149.99714 * 3 2 1 7 7 C 1.37879 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99393 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47610 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00472 * 180.02562 * 12 11 10 14 14 O 1.21586 * 119.99870 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99560 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.05382 * 33.58892 * 16 15 13 18 18 C 1.54257 * 110.03110 * 272.16225 * 16 15 13 19 19 C 1.54890 * 104.19520 * 217.10704 * 18 16 15 20 20 C 1.54886 * 102.75126 * 37.94242 * 19 18 16 21 21 C 1.53879 * 110.02906 * 154.99492 * 16 15 13 22 22 H 1.09002 * 110.03435 * 238.56868 * 21 16 15 23 23 O 1.42904 * 110.07425 * 359.97438 * 21 16 15 24 24 H 0.97000 * 120.00245 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46672 * 60.00568 * 9 7 2 26 26 H 1.08998 * 109.47303 * 300.00392 * 9 7 2 27 27 H 1.09005 * 109.46865 * 59.99832 * 10 9 7 28 28 H 1.08998 * 109.47323 * 300.00232 * 10 9 7 29 29 H 1.09009 * 109.46851 * 59.99958 * 11 10 9 30 30 H 1.08998 * 109.47105 * 300.00343 * 11 10 9 31 31 H 0.97002 * 119.99509 * 0.02562 * 12 11 10 32 32 H 0.96997 * 120.00270 * 359.97438 * 15 13 12 33 33 H 1.09002 * 110.48576 * 98.43436 * 18 16 15 34 34 H 1.08997 * 110.49000 * 335.78712 * 18 16 15 35 35 H 1.09003 * 110.75715 * 279.63207 * 19 18 16 36 36 H 1.08996 * 110.75675 * 156.26368 * 19 18 16 37 37 H 1.08994 * 110.49258 * 203.37966 * 20 19 18 38 38 H 1.09005 * 110.59664 * 80.78672 * 20 19 18 39 39 H 0.96701 * 113.99895 * 179.27334 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0399 -4.0177 0.0009 13 6 7.3649 -4.2640 0.0016 14 8 8.1550 -3.3399 0.0020 15 7 7.8141 -5.5347 0.0017 16 6 9.2545 -5.8024 0.0019 17 1 9.7778 -5.0320 0.5684 18 6 9.7841 -5.8453 -1.4463 19 6 10.8525 -6.9666 -1.4269 20 6 10.2227 -8.0226 -0.4850 21 6 9.5332 -7.1868 0.6132 22 1 10.1918 -7.0883 1.4761 23 8 8.3062 -7.8070 1.0027 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6796 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.6578 -3.1505 -0.8897 28 1 3.6585 -3.1502 0.8903 29 1 5.9148 -2.1226 0.8902 30 1 5.9148 -2.1228 -0.8898 31 1 5.4095 -4.7550 0.0009 32 1 7.1838 -6.2720 0.0017 33 1 10.2375 -4.8912 -1.7151 34 1 8.9808 -6.0957 -2.1391 35 1 11.7931 -6.5970 -1.0186 36 1 10.9988 -7.3780 -2.4256 37 1 10.9958 -8.6575 -0.0523 38 1 9.4903 -8.6264 -1.0210 39 1 8.4151 -8.6884 1.3854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172582867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:47 Heat of formation + Delta-G solvation = -100.356426 kcal Electronic energy + Delta-G solvation = -18791.975009 eV Core-core repulsion = 15733.719778 eV Total energy + Delta-G solvation = -3058.255231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20774 -38.68864 -35.67929 -35.21529 -33.66343 -33.10970 -31.29494 -28.24534 -27.86869 -26.51771 -22.87253 -21.34795 -20.94170 -20.46059 -20.20381 -18.32635 -17.57082 -16.79936 -16.14721 -15.71127 -15.38653 -14.96701 -14.55476 -14.28350 -14.14748 -13.73475 -13.63303 -12.90332 -12.66985 -12.38914 -11.99521 -11.85582 -11.68080 -11.44203 -11.39843 -11.00732 -10.95857 -10.84812 -10.34574 -10.19907 -9.94634 -9.77163 -9.62883 -9.18843 -9.09317 -8.55701 -8.52094 -6.03251 -4.01650 2.82656 3.34249 3.40969 3.41536 3.46698 3.76530 4.18942 4.21519 4.47656 4.49743 4.64821 4.89466 5.09783 5.16570 5.23036 5.29307 5.31076 5.44057 5.60932 5.62481 5.76070 5.77518 5.88433 5.97260 6.10843 6.46761 6.53432 6.54521 6.78175 6.90246 7.17062 7.25343 7.28809 7.41718 7.79532 8.25659 8.53843 8.82703 9.00914 9.59229 11.10073 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.003188 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.957080 B = 8781.093407 C = 9095.762713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.600 6.600 15 N -0.732 5.732 16 C 0.169 3.831 17 H 0.095 0.905 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.093 3.907 22 H 0.067 0.933 23 O -0.562 6.562 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.395 0.605 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.520 -18.488 -0.335 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.479 6.479 15 N -0.389 5.389 16 C 0.062 3.938 17 H 0.114 0.886 18 C -0.176 4.176 19 C -0.160 4.160 20 C -0.196 4.196 21 C 0.033 3.967 22 H 0.085 0.915 23 O -0.368 6.368 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 21.823 -16.927 -0.541 27.623 hybrid contribution -0.006 -0.335 0.188 0.384 sum 21.818 -17.262 -0.354 27.823 Atomic orbital electron populations 1.69912 1.06326 1.26925 1.51162 1.25028 0.94746 0.99245 0.94496 0.86771 0.80432 0.83491 0.78585 1.20253 1.21412 1.18843 1.21113 0.89363 0.94499 1.50927 0.91018 1.19501 0.97190 0.91537 0.96670 1.21703 0.90791 1.00915 1.01682 1.21487 0.95599 0.80204 1.01700 1.45304 1.04857 1.09968 1.79473 1.16053 0.82992 0.83201 0.77800 1.90890 1.55095 1.43365 1.58524 1.44880 1.07377 1.06351 1.80299 1.21450 0.81631 0.94594 0.96137 0.88650 1.22865 0.98647 0.99385 0.96699 1.22384 0.98262 0.95651 0.99747 1.23130 1.00393 0.98396 0.97650 1.22779 0.85674 0.92317 0.95883 0.91521 1.86371 1.30905 1.35648 1.83866 0.92729 0.96281 0.96730 0.92181 0.92147 0.92080 0.92076 0.77149 0.75982 0.90587 0.90840 0.91037 0.91009 0.91176 0.90327 0.77078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.19 5.27 -26.73 -0.14 -2.33 16 11 C 0.13 2.36 5.67 -4.05 -0.02 2.34 16 12 N -0.74 -11.20 5.56 -65.23 -0.36 -11.57 16 13 C 0.70 11.17 8.56 -86.92 -0.74 10.43 16 14 O -0.60 -11.86 16.00 5.29 0.08 -11.78 16 15 N -0.73 -8.87 4.82 -57.58 -0.28 -9.15 16 16 C 0.17 1.75 3.24 -66.81 -0.22 1.54 16 17 H 0.10 1.15 7.56 -51.93 -0.39 0.76 16 18 C -0.14 -1.28 6.53 -25.08 -0.16 -1.44 16 19 C -0.12 -0.79 6.91 -24.74 -0.17 -0.96 16 20 C -0.16 -0.88 6.55 -25.07 -0.16 -1.05 16 21 C 0.09 0.67 4.26 -25.61 -0.11 0.56 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 O -0.56 -4.01 11.44 -35.23 -0.40 -4.42 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.40 4.94 8.49 -40.82 -0.35 4.59 16 32 H 0.40 4.29 7.22 -40.82 -0.29 3.99 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 39 H 0.38 1.15 9.11 45.56 0.41 1.56 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -34.55 319.03 -7.94 -42.49 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.61 Total: 4.25 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.28 Total: -4.70 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.13 Total: -48.05 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.32 Total: -16.19 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.55 -7.94 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172582867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.869 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds