Wall clock time and date at job start Mon Mar 30 2020 04:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47192 * 270.00316 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99463 * 3 2 1 6 6 H 1.48497 * 109.47462 * 149.99714 * 3 2 1 7 7 C 1.37879 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99393 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46939 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47610 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00472 * 180.02562 * 12 11 10 14 14 O 1.21586 * 119.99870 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99560 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.05382 * 33.58892 * 16 15 13 18 18 C 1.54257 * 110.03110 * 272.16225 * 16 15 13 19 19 C 1.54890 * 104.19520 * 217.10704 * 18 16 15 20 20 C 1.54886 * 102.75126 * 37.94242 * 19 18 16 21 21 C 1.53879 * 110.02906 * 154.99492 * 16 15 13 22 22 H 1.09002 * 110.03435 * 238.56868 * 21 16 15 23 23 O 1.42904 * 110.07425 * 359.97438 * 21 16 15 24 24 H 0.97000 * 120.00245 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46672 * 60.00568 * 9 7 2 26 26 H 1.08998 * 109.47303 * 300.00392 * 9 7 2 27 27 H 1.09005 * 109.46865 * 59.99832 * 10 9 7 28 28 H 1.08998 * 109.47323 * 300.00232 * 10 9 7 29 29 H 1.09009 * 109.46851 * 59.99958 * 11 10 9 30 30 H 1.08998 * 109.47105 * 300.00343 * 11 10 9 31 31 H 0.97002 * 119.99509 * 0.02562 * 12 11 10 32 32 H 0.96997 * 120.00270 * 359.97438 * 15 13 12 33 33 H 1.09002 * 110.48576 * 98.43436 * 18 16 15 34 34 H 1.08997 * 110.49000 * 335.78712 * 18 16 15 35 35 H 1.09003 * 110.75715 * 279.63207 * 19 18 16 36 36 H 1.08996 * 110.75675 * 156.26368 * 19 18 16 37 37 H 1.08994 * 110.49258 * 203.37966 * 20 19 18 38 38 H 1.09005 * 110.59664 * 80.78672 * 20 19 18 39 39 H 0.96701 * 113.99895 * 179.27334 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0399 -4.0177 0.0009 13 6 7.3649 -4.2640 0.0016 14 8 8.1550 -3.3399 0.0020 15 7 7.8141 -5.5347 0.0017 16 6 9.2545 -5.8024 0.0019 17 1 9.7778 -5.0320 0.5684 18 6 9.7841 -5.8453 -1.4463 19 6 10.8525 -6.9666 -1.4269 20 6 10.2227 -8.0226 -0.4850 21 6 9.5332 -7.1868 0.6132 22 1 10.1918 -7.0883 1.4761 23 8 8.3062 -7.8070 1.0027 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6796 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.6578 -3.1505 -0.8897 28 1 3.6585 -3.1502 0.8903 29 1 5.9148 -2.1226 0.8902 30 1 5.9148 -2.1228 -0.8898 31 1 5.4095 -4.7550 0.0009 32 1 7.1838 -6.2720 0.0017 33 1 10.2375 -4.8912 -1.7151 34 1 8.9808 -6.0957 -2.1391 35 1 11.7931 -6.5970 -1.0186 36 1 10.9988 -7.3780 -2.4256 37 1 10.9958 -8.6575 -0.0523 38 1 9.4903 -8.6264 -1.0210 39 1 8.4151 -8.6884 1.3854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172582867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:46 Heat of formation + Delta-G solvation = -127.691821 kcal Electronic energy + Delta-G solvation = -18793.160361 eV Core-core repulsion = 15733.719778 eV Total energy + Delta-G solvation = -3059.440583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25986 -39.54701 -37.01994 -36.02733 -35.14556 -34.58820 -33.09830 -29.39475 -28.62277 -27.83381 -24.60140 -22.28941 -22.05711 -21.72802 -21.17382 -19.47350 -18.88490 -18.31528 -17.14438 -16.80566 -16.51041 -16.25720 -15.74437 -15.63890 -15.20555 -15.03084 -14.76492 -14.48235 -13.79518 -13.75777 -13.48023 -13.03939 -12.72644 -12.69285 -12.35273 -12.08023 -11.99280 -11.92422 -11.77556 -11.58876 -11.54064 -11.33245 -11.26791 -10.83306 -10.75805 -10.31723 -9.70436 -8.29114 -6.32965 1.37498 1.38998 1.51319 1.72610 2.15841 2.37043 3.06642 3.10690 3.48531 3.62046 3.65859 4.08198 4.10940 4.22250 4.35517 4.42271 4.49089 4.51877 4.62957 4.73294 4.89882 4.90838 4.99219 5.04240 5.08218 5.14839 5.20042 5.38618 5.42601 5.53436 5.56651 5.59963 5.65925 6.07670 6.28032 6.74892 6.90608 7.15937 7.31871 7.61682 8.87406 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.049637 B = 0.003188 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.957080 B = 8781.093407 C = 9095.762713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.099 4.099 11 C 0.147 3.853 12 N -0.734 5.734 13 C 0.695 3.305 14 O -0.641 6.641 15 N -0.716 5.716 16 C 0.155 3.845 17 H 0.074 0.926 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.147 4.147 21 C 0.100 3.900 22 H 0.078 0.922 23 O -0.577 6.577 24 H 0.266 0.734 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.409 0.591 32 H 0.414 0.586 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.499 -19.620 -0.260 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.023 3.977 12 N -0.390 5.390 13 C 0.395 3.605 14 O -0.523 6.523 15 N -0.373 5.373 16 C 0.049 3.951 17 H 0.092 0.908 18 C -0.176 4.176 19 C -0.155 4.155 20 C -0.185 4.185 21 C 0.041 3.959 22 H 0.096 0.904 23 O -0.386 6.386 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 23.809 -18.144 -0.461 29.938 hybrid contribution -0.669 -0.082 0.170 0.696 sum 23.139 -18.226 -0.290 29.457 Atomic orbital electron populations 1.70055 1.08221 1.28153 1.52732 1.25983 0.95599 1.03448 0.94189 0.85689 0.79505 0.78453 0.79217 1.19194 1.20963 1.17171 1.21466 0.91873 0.93292 1.50251 0.94425 1.19460 0.94079 0.94569 0.96841 1.21472 0.91912 0.98175 1.02116 1.21134 0.94051 0.81500 1.01049 1.45057 1.05077 1.09478 1.79341 1.16225 0.82706 0.83914 0.77657 1.90861 1.56099 1.44917 1.60452 1.44806 1.08514 1.05162 1.78802 1.21694 0.80152 0.96266 0.96951 0.90823 1.22806 0.99298 0.99777 0.95690 1.22387 0.97580 0.94741 1.00791 1.23073 1.00740 0.97938 0.96713 1.22683 0.85949 0.90604 0.96698 0.90373 1.86305 1.30949 1.37195 1.84188 0.92483 0.96066 0.96160 0.91731 0.91799 0.92868 0.92721 0.75492 0.74860 0.92458 0.91617 0.90209 0.90017 0.88861 0.90189 0.74797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.00 0.27 5.47 84.66 0.46 0.73 16 3 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.09 6.54 99.48 0.65 -10.43 16 7 C -0.53 -30.68 9.66 25.60 0.25 -30.44 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.15 5.05 5.67 86.38 0.49 5.54 16 12 N -0.73 -21.40 5.56 -478.54 -2.66 -24.06 16 13 C 0.70 21.85 8.56 179.05 1.53 23.38 16 14 O -0.64 -25.52 16.00 -3.99 -0.06 -25.59 16 15 N -0.72 -16.71 4.82 -454.35 -2.19 -18.90 16 16 C 0.16 3.11 3.24 45.71 0.15 3.26 16 17 H 0.07 1.80 7.56 -2.39 -0.02 1.78 16 18 C -0.14 -2.47 6.53 31.67 0.21 -2.26 16 19 C -0.12 -1.26 6.91 31.88 0.22 -1.04 16 20 C -0.15 -1.19 6.55 31.67 0.21 -0.98 16 21 C 0.10 1.22 4.26 31.32 0.13 1.35 16 22 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 23 O -0.58 -6.78 11.44 -148.98 -1.70 -8.49 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 25 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 26 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 27 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 9.58 8.49 -92.71 -0.79 8.79 16 32 H 0.41 8.12 7.22 -92.71 -0.67 7.45 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 39 H 0.40 1.21 9.11 -74.06 -0.67 0.54 16 Total: -1.00 -75.17 319.03 -1.63 -76.80 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -1.13 Total: 17.49 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 3.93 Total: -4.43 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -4.55 Total: -102.75 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.77 Total: -34.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -75.17 -1.63 -76.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172582867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.894 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds