Wall clock time and date at job start Mon Mar 30 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.47011 * 110.99896 * 287.87089 * 5 4 3 7 7 C 1.53102 * 109.25697 * 177.60990 * 6 5 4 8 8 O 1.43014 * 109.25906 * 56.84640 * 7 6 5 9 9 C 1.43018 * 113.74082 * 301.33165 * 8 7 6 10 10 C 1.47007 * 110.99747 * 164.23756 * 5 4 3 11 11 H 1.08998 * 109.54591 * 62.43174 * 10 5 4 12 12 C 1.50701 * 109.50803 * 302.32479 * 10 5 4 13 13 O 1.21295 * 119.99934 * 332.19655 * 12 10 5 14 14 N 1.34774 * 120.00038 * 152.19319 * 12 10 5 15 15 C 1.37106 * 120.00082 * 180.02562 * 14 12 10 16 16 H 1.07997 * 119.99735 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00093 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47455 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47308 * 300.00200 * 19 17 15 22 22 H 1.48508 * 109.47202 * 59.99716 * 19 17 15 23 23 H 1.09001 * 109.47233 * 300.00522 * 1 2 3 24 24 H 1.09000 * 109.46942 * 60.00223 * 1 2 3 25 25 H 1.08999 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47394 * 239.99767 * 2 1 3 27 27 H 1.09000 * 109.47467 * 119.99793 * 2 1 3 28 28 H 1.09001 * 109.47437 * 59.99602 * 3 2 1 29 29 H 1.09000 * 109.46974 * 299.99757 * 3 2 1 30 30 H 1.09005 * 109.47002 * 59.99935 * 4 3 2 31 31 H 1.09000 * 109.46942 * 299.99777 * 4 3 2 32 32 H 1.09005 * 109.50906 * 57.67852 * 6 5 4 33 33 H 1.09000 * 109.54303 * 297.56108 * 6 5 4 34 34 H 1.09004 * 109.50496 * 296.91443 * 7 6 5 35 35 H 1.09000 * 109.50781 * 176.78489 * 7 6 5 36 36 H 1.08998 * 109.50744 * 298.73926 * 9 8 7 37 37 H 1.09001 * 109.54381 * 178.62492 * 9 8 7 38 38 H 0.96998 * 120.00486 * 0.02562 * 14 12 10 39 39 H 0.97005 * 120.00024 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8276 0.0000 6 6 3.8388 3.4639 -1.3067 7 6 4.3077 4.9200 -1.2450 8 8 5.6818 4.9568 -0.8503 9 6 5.9329 4.3461 0.4184 10 6 5.4804 2.8842 0.3734 11 1 6.0731 2.3422 -0.3636 12 6 5.6694 2.2571 1.7307 13 8 4.7611 2.2657 2.5345 14 7 6.8477 1.6867 2.0513 15 6 7.0195 1.1157 3.2859 16 1 6.2105 1.1227 4.0013 17 6 8.2344 0.5281 3.6166 18 7 9.2186 0.5192 2.7460 19 14 8.4687 -0.2492 5.2990 20 1 9.8427 -0.8031 5.4014 21 1 8.2692 0.7792 6.3515 22 1 7.4800 -1.3422 5.4813 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9338 0.9285 -0.8891 31 1 3.9330 0.9289 0.8909 32 1 2.7770 3.4335 -1.5515 33 1 4.4041 2.9316 -2.0717 34 1 3.7056 5.4658 -0.5185 35 1 4.1987 5.3794 -2.2275 36 1 5.3781 4.8751 1.1932 37 1 6.9993 4.3905 0.6396 38 1 7.5742 1.6801 1.4086 39 1 9.0971 0.9231 1.8724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184349439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:33 Heat of formation + Delta-G solvation = -87.387111 kcal Electronic energy + Delta-G solvation = -19994.089783 eV Core-core repulsion = 16936.396944 eV Total energy + Delta-G solvation = -3057.692840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92505 -37.80489 -36.34310 -34.42045 -33.95183 -31.55811 -30.66384 -29.47073 -26.35185 -25.16698 -23.81588 -22.53229 -21.05596 -20.64995 -19.31994 -17.93884 -16.81499 -16.23640 -15.94342 -15.45662 -15.06704 -14.67159 -14.33286 -13.98079 -13.84972 -13.66618 -13.35790 -13.33256 -12.64953 -12.32741 -12.28897 -11.75441 -11.33118 -11.21851 -11.17275 -11.02676 -10.93794 -10.79733 -10.50121 -10.22729 -10.20325 -9.89912 -9.62798 -9.51664 -8.44407 -8.09463 -8.05181 -6.79138 -3.92797 3.26867 3.33179 3.53347 3.65257 3.88459 3.95132 4.26393 4.73448 4.93527 5.03544 5.10447 5.12965 5.20808 5.24621 5.28064 5.33574 5.43226 5.51064 5.67112 5.74621 5.77279 5.82296 5.86711 5.91399 5.93329 5.98659 6.10352 6.17464 6.21148 6.46384 6.49947 7.11643 7.21107 7.25385 7.76387 8.03754 8.55117 8.74909 9.42336 9.82394 10.63841 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.006490 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.985617 B = 4313.122101 C = 5645.215791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.107 4.107 4 C 0.054 3.946 5 N -0.510 5.510 6 C 0.017 3.983 7 C 0.063 3.937 8 O -0.386 6.386 9 C 0.079 3.921 10 C 0.042 3.958 11 H 0.052 0.948 12 C 0.449 3.551 13 O -0.565 6.565 14 N -0.571 5.571 15 C -0.383 4.383 16 H 0.100 0.900 17 C -0.007 4.007 18 N -0.898 5.898 19 Si 1.091 2.909 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.375 0.625 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 3.269 -8.946 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.073 4.073 5 N -0.235 5.235 6 C -0.112 4.112 7 C -0.014 4.014 8 O -0.304 6.304 9 C 0.001 3.999 10 C -0.071 4.071 11 H 0.070 0.930 12 C 0.234 3.766 13 O -0.448 6.448 14 N -0.209 5.209 15 C -0.512 4.512 16 H 0.118 0.882 17 C -0.210 4.210 18 N -0.536 5.536 19 Si 0.917 3.083 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.208 0.792 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.857 2.808 -7.167 12.506 hybrid contribution -0.422 0.187 -1.935 1.989 sum -10.278 2.995 -9.102 14.052 Atomic orbital electron populations 1.21741 0.95963 1.01254 1.01640 1.21491 0.95665 0.97094 1.02042 1.21508 0.94538 0.96268 1.02192 1.22213 0.95655 0.88117 1.01352 1.61893 1.15868 1.18518 1.27227 1.22859 1.01793 0.96008 0.90506 1.22657 0.83092 0.95181 1.00513 1.87961 1.25902 1.79201 1.37323 1.22576 1.01500 0.90259 0.85562 1.22170 0.89685 0.98073 0.97126 0.92985 1.19325 0.84157 0.84788 0.88353 1.90544 1.41362 1.61973 1.50922 1.42019 1.12063 1.51055 1.15806 1.20537 1.02491 1.36146 0.92055 0.88232 1.26524 0.91054 0.97015 1.06432 1.70902 1.32974 1.42777 1.06984 0.83137 0.76425 0.76298 0.72463 1.20370 1.20929 1.21003 0.92649 0.93074 0.93008 0.92485 0.91676 0.90873 0.92738 0.95641 0.89179 0.89528 0.94350 0.92220 0.88721 0.91537 0.88157 0.79157 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.11 -1.51 5.27 -26.73 -0.14 -1.65 16 4 C 0.05 0.92 4.63 -3.82 -0.02 0.90 16 5 N -0.51 -8.83 4.23 -227.72 -0.96 -9.79 16 6 C 0.02 0.23 5.46 -3.71 -0.02 0.21 16 7 C 0.06 0.82 7.01 37.21 0.26 1.08 16 8 O -0.39 -6.14 10.83 -35.23 -0.38 -6.52 16 9 C 0.08 1.36 6.27 37.21 0.23 1.59 16 10 C 0.04 0.80 2.38 -68.75 -0.16 0.63 16 11 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.45 10.61 5.70 -10.99 -0.06 10.55 16 13 O -0.57 -15.31 15.15 5.54 0.08 -15.23 16 14 N -0.57 -14.32 5.28 -10.96 -0.06 -14.37 16 15 C -0.38 -10.64 9.68 -14.93 -0.14 -10.78 16 16 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 17 C -0.01 -0.20 5.50 -17.47 -0.10 -0.29 16 18 N -0.90 -24.98 13.68 55.50 0.76 -24.22 16 19 Si 1.09 24.06 29.92 -169.99 -5.09 18.98 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.67 6.73 -51.93 -0.35 0.33 16 30 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 31 H 0.09 1.87 5.96 -51.93 -0.31 1.56 16 32 H 0.09 1.01 6.63 -51.93 -0.34 0.67 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.38 8.82 6.73 -40.82 -0.27 8.54 16 39 H 0.26 7.03 6.78 -40.82 -0.28 6.75 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -31.33 313.91 -7.07 -38.40 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.22 Total: 8.72 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 0.06 Total: -0.69 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.26 Total: -48.39 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.30 Total: -21.75 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.09 Total: 18.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.33 -7.07 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184349439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.983 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds