Wall clock time and date at job start Mon Mar 30 2020 04:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.53001 * 109.47234 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.47011 * 110.99896 * 287.87089 * 5 4 3 7 7 C 1.53102 * 109.25697 * 177.60990 * 6 5 4 8 8 O 1.43014 * 109.25906 * 56.84640 * 7 6 5 9 9 C 1.43018 * 113.74082 * 301.33165 * 8 7 6 10 10 C 1.47007 * 110.99747 * 164.23756 * 5 4 3 11 11 H 1.08998 * 109.54591 * 62.43174 * 10 5 4 12 12 C 1.50701 * 109.50803 * 302.32479 * 10 5 4 13 13 O 1.21295 * 119.99934 * 332.19655 * 12 10 5 14 14 N 1.34774 * 120.00038 * 152.19319 * 12 10 5 15 15 C 1.37106 * 120.00082 * 180.02562 * 14 12 10 16 16 H 1.07997 * 119.99735 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00093 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47455 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47308 * 300.00200 * 19 17 15 22 22 H 1.48508 * 109.47202 * 59.99716 * 19 17 15 23 23 H 1.09001 * 109.47233 * 300.00522 * 1 2 3 24 24 H 1.09000 * 109.46942 * 60.00223 * 1 2 3 25 25 H 1.08999 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47394 * 239.99767 * 2 1 3 27 27 H 1.09000 * 109.47467 * 119.99793 * 2 1 3 28 28 H 1.09001 * 109.47437 * 59.99602 * 3 2 1 29 29 H 1.09000 * 109.46974 * 299.99757 * 3 2 1 30 30 H 1.09005 * 109.47002 * 59.99935 * 4 3 2 31 31 H 1.09000 * 109.46942 * 299.99777 * 4 3 2 32 32 H 1.09005 * 109.50906 * 57.67852 * 6 5 4 33 33 H 1.09000 * 109.54303 * 297.56108 * 6 5 4 34 34 H 1.09004 * 109.50496 * 296.91443 * 7 6 5 35 35 H 1.09000 * 109.50781 * 176.78489 * 7 6 5 36 36 H 1.08998 * 109.50744 * 298.73926 * 9 8 7 37 37 H 1.09001 * 109.54381 * 178.62492 * 9 8 7 38 38 H 0.96998 * 120.00486 * 0.02562 * 14 12 10 39 39 H 0.97005 * 120.00024 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8276 0.0000 6 6 3.8388 3.4639 -1.3067 7 6 4.3077 4.9200 -1.2450 8 8 5.6818 4.9568 -0.8503 9 6 5.9329 4.3461 0.4184 10 6 5.4804 2.8842 0.3734 11 1 6.0731 2.3422 -0.3636 12 6 5.6694 2.2571 1.7307 13 8 4.7611 2.2657 2.5345 14 7 6.8477 1.6867 2.0513 15 6 7.0195 1.1157 3.2859 16 1 6.2105 1.1227 4.0013 17 6 8.2344 0.5281 3.6166 18 7 9.2186 0.5192 2.7460 19 14 8.4687 -0.2492 5.2990 20 1 9.8427 -0.8031 5.4014 21 1 8.2692 0.7792 6.3515 22 1 7.4800 -1.3422 5.4813 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9338 0.9285 -0.8891 31 1 3.9330 0.9289 0.8909 32 1 2.7770 3.4335 -1.5515 33 1 4.4041 2.9316 -2.0717 34 1 3.7056 5.4658 -0.5185 35 1 4.1987 5.3794 -2.2275 36 1 5.3781 4.8751 1.1932 37 1 6.9993 4.3905 0.6396 38 1 7.5742 1.6801 1.4086 39 1 9.0971 0.9231 1.8724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184349439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:32 Heat of formation + Delta-G solvation = -110.290772 kcal Electronic energy + Delta-G solvation = -19995.082961 eV Core-core repulsion = 16936.396944 eV Total energy + Delta-G solvation = -3058.686017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43149 -39.53024 -37.61549 -36.37101 -35.20460 -33.37616 -32.25245 -30.62549 -27.62723 -26.92890 -25.41442 -23.67833 -22.50885 -21.84763 -20.99002 -19.98616 -18.51854 -17.57399 -17.36270 -16.82027 -16.52532 -16.07584 -15.80905 -15.51030 -15.32950 -15.19202 -15.03557 -14.42674 -13.89867 -13.83507 -13.40820 -13.37151 -13.00590 -12.80115 -12.53220 -12.24414 -12.03384 -11.93925 -11.92940 -11.91271 -11.67775 -11.52674 -11.37391 -10.89579 -10.32992 -10.15243 -9.44100 -8.96219 -6.10857 1.47604 1.53409 1.81510 1.88544 2.32858 2.55931 2.66410 3.09442 3.11987 3.70546 3.84296 3.85888 3.91607 4.02642 4.07842 4.20237 4.23978 4.28257 4.34893 4.48156 4.58991 4.64818 4.68098 4.76804 4.87087 4.92460 4.95574 5.05210 5.21076 5.35566 5.41638 5.54687 5.77064 5.91015 5.96920 6.01658 6.51399 6.68226 7.37237 7.84349 8.50585 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.006490 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.985617 B = 4313.122101 C = 5645.215791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.097 4.097 4 C 0.057 3.943 5 N -0.525 5.525 6 C 0.017 3.983 7 C 0.056 3.944 8 O -0.388 6.388 9 C 0.087 3.913 10 C 0.051 3.949 11 H 0.059 0.941 12 C 0.454 3.546 13 O -0.603 6.603 14 N -0.581 5.581 15 C -0.409 4.409 16 H 0.075 0.925 17 C -0.039 4.039 18 N -0.913 5.913 19 Si 1.133 2.867 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.273 1.273 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.134 0.866 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.382 0.618 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 3.693 -10.569 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.135 4.135 4 C -0.071 4.071 5 N -0.251 5.251 6 C -0.110 4.110 7 C -0.020 4.020 8 O -0.307 6.307 9 C 0.009 3.991 10 C -0.061 4.061 11 H 0.077 0.923 12 C 0.241 3.759 13 O -0.487 6.487 14 N -0.220 5.220 15 C -0.538 4.538 16 H 0.093 0.907 17 C -0.238 4.238 18 N -0.552 5.552 19 Si 0.953 3.047 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.198 1.198 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.151 0.849 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.216 0.784 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.772 3.250 -8.832 14.303 hybrid contribution -0.225 0.100 -1.515 1.535 sum -10.997 3.350 -10.347 15.466 Atomic orbital electron populations 1.21709 0.94052 1.02211 1.02191 1.21489 0.97313 0.95911 1.01508 1.21442 0.92296 0.97374 1.02380 1.22157 0.97558 0.87869 0.99523 1.61938 1.14346 1.18836 1.29984 1.23023 1.03648 0.95932 0.88436 1.22981 0.81481 0.95032 1.02492 1.87968 1.27918 1.78708 1.36079 1.22386 1.01500 0.88887 0.86280 1.22027 0.91447 0.98748 0.93892 0.92308 1.20171 0.82868 0.83132 0.89744 1.90511 1.42434 1.63006 1.52782 1.42052 1.12912 1.51628 1.15406 1.20518 1.02411 1.37871 0.93011 0.90685 1.27845 0.90311 0.96583 1.09021 1.70975 1.33397 1.43535 1.07289 0.82641 0.76830 0.76195 0.69066 1.19667 1.19670 1.19836 0.93179 0.91418 0.91913 0.91324 0.93967 0.92994 0.89993 0.94433 0.93909 0.86862 0.93649 0.92171 0.84853 0.92765 0.87839 0.78381 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.91 71.98 0.71 -2.05 16 2 C -0.12 -3.00 5.93 30.60 0.18 -2.82 16 3 C -0.10 -2.63 5.27 30.60 0.16 -2.47 16 4 C 0.06 1.90 4.63 86.30 0.40 2.30 16 5 N -0.53 -17.69 4.23 -874.37 -3.70 -21.39 16 6 C 0.02 0.41 5.46 86.32 0.47 0.88 16 7 C 0.06 1.28 7.01 72.02 0.50 1.79 16 8 O -0.39 -11.50 10.83 -148.98 -1.61 -13.11 16 9 C 0.09 2.98 6.27 72.02 0.45 3.43 16 10 C 0.05 1.95 2.38 44.18 0.11 2.05 16 11 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 12 C 0.45 22.15 5.70 87.66 0.50 22.65 16 13 O -0.60 -34.01 15.15 -3.08 -0.05 -34.06 16 14 N -0.58 -30.07 5.28 -306.98 -1.62 -31.69 16 15 C -0.41 -23.44 9.68 84.04 0.81 -22.63 16 16 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 17 C -0.04 -2.12 5.50 84.93 0.47 -1.65 16 18 N -0.91 -51.14 13.68 21.66 0.30 -50.85 16 19 Si 1.13 48.49 29.92 68.60 2.05 50.54 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.77 6.73 -2.39 -0.02 1.75 16 30 H 0.04 1.15 8.05 -2.38 -0.02 1.13 16 31 H 0.04 1.84 5.96 -2.39 -0.01 1.83 16 32 H 0.11 2.16 6.63 -2.38 -0.02 2.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 38 H 0.38 18.46 6.73 -92.71 -0.62 17.84 16 39 H 0.26 14.09 6.78 -92.70 -0.63 13.46 16 Total: -1.00 -69.08 313.91 0.69 -68.39 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.55 Total: 30.67 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.77 Total: 1.49 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -5.02 Total: -103.93 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -1.66 Total: -47.17 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -69.08 0.69 -68.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184349439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.898 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds