Wall clock time and date at job start Mon Mar 30 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47362 * 2 1 4 4 C 1.53005 * 109.47090 * 120.00393 * 2 1 3 5 5 O 1.45200 * 109.47033 * 239.99780 * 2 1 3 6 6 C 1.34643 * 116.99800 * 60.00456 * 5 2 1 7 7 O 1.21512 * 119.99781 * 359.97438 * 6 5 2 8 8 N 1.34768 * 119.99825 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.65253 * 354.95345 * 8 6 5 10 10 C 1.54911 * 104.83460 * 204.08966 * 9 8 6 11 11 H 1.09002 * 110.99889 * 81.06791 * 10 9 8 12 12 N 1.46895 * 111.00558 * 204.91720 * 10 9 8 13 13 C 1.55157 * 101.58281 * 322.99563 * 10 9 8 14 14 C 1.47026 * 125.64915 * 174.64797 * 8 6 5 15 15 H 1.09009 * 109.88028 * 59.56054 * 14 8 6 16 16 C 1.50694 * 109.88249 * 298.39785 * 14 8 6 17 17 H 1.08004 * 120.00145 * 334.96090 * 16 14 8 18 18 C 1.37880 * 120.00168 * 154.95941 * 16 14 8 19 19 N 1.31513 * 120.00188 * 5.01241 * 18 16 14 20 20 Si 1.86803 * 120.00109 * 185.01298 * 18 16 14 21 21 H 1.48501 * 109.47209 * 59.99985 * 20 18 16 22 22 H 1.48498 * 109.47034 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47150 * 300.00330 * 20 18 16 24 24 H 1.09000 * 109.47027 * 59.99876 * 1 2 3 25 25 H 1.08999 * 109.47550 * 299.99852 * 1 2 3 26 26 H 1.09004 * 109.47583 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46872 * 60.00341 * 3 2 1 28 28 H 1.08999 * 109.46908 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47418 * 300.00528 * 3 2 1 30 30 H 1.08996 * 109.47043 * 59.99880 * 4 2 1 31 31 H 1.08996 * 109.47225 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.46727 * 299.99703 * 4 2 1 33 33 H 1.08999 * 110.36742 * 322.93822 * 9 8 6 34 34 H 1.09011 * 110.36411 * 85.25509 * 9 8 6 35 35 H 1.00906 * 111.00377 * 298.55143 * 12 10 9 36 36 H 1.00900 * 111.00176 * 62.50243 * 12 10 9 37 37 H 1.08998 * 110.71772 * 153.86274 * 13 10 9 38 38 H 1.09001 * 110.71621 * 277.13569 * 13 10 9 39 39 H 0.96998 * 120.00353 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 2.0139 -0.6845 -1.1855 6 6 1.6522 -0.1729 -2.3773 7 8 0.9509 0.8183 -2.4252 8 7 2.0680 -0.7600 -3.5168 9 6 3.0018 -1.8973 -3.6064 10 6 3.6217 -1.7909 -5.0221 11 1 4.4286 -1.0585 -5.0411 12 7 4.0917 -3.1013 -5.4909 13 6 2.4084 -1.3037 -5.8576 14 6 1.6605 -0.3765 -4.8765 15 1 1.9354 0.6610 -5.0671 16 6 0.1722 -0.5526 -5.0343 17 1 -0.3571 -1.2588 -4.4117 18 6 -0.5139 0.1878 -5.9735 19 7 0.1424 0.9745 -6.7981 20 14 -2.3757 0.0736 -6.0748 21 1 -2.9687 0.4973 -4.7809 22 1 -2.8678 0.9614 -7.1586 23 1 -2.7706 -1.3283 -6.3647 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4423 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 -1.7490 1.2492 31 1 3.1299 -0.7218 1.2490 32 1 1.6766 -0.2075 2.1392 33 1 3.7773 -1.8122 -2.8452 34 1 2.4640 -2.8392 -3.4975 35 1 4.8117 -3.4653 -4.8849 36 1 3.3251 -3.7523 -5.5730 37 1 2.7421 -0.7510 -6.7358 38 1 1.7767 -2.1437 -6.1462 39 1 -0.3403 1.4957 -7.4586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215807537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:33 Heat of formation + Delta-G solvation = -81.358225 kcal Electronic energy + Delta-G solvation = -20504.409593 eV Core-core repulsion = 17446.978186 eV Total energy + Delta-G solvation = -3057.431408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01782 -38.13159 -35.84009 -33.63411 -33.28798 -32.28133 -29.20274 -27.30776 -27.12410 -27.07763 -24.66866 -22.79806 -20.64544 -19.81038 -18.64939 -17.14741 -16.68522 -16.12663 -15.54089 -15.30147 -14.74702 -14.22062 -14.15527 -13.72461 -13.47421 -13.12338 -12.53558 -12.40890 -12.31293 -12.11768 -11.81368 -11.60034 -11.49543 -11.42269 -11.02660 -10.92452 -10.88762 -10.64476 -10.48664 -10.36077 -9.86773 -9.78788 -9.36119 -9.20065 -8.48772 -8.41956 -7.62662 -6.06072 -4.10062 2.91328 3.33351 3.37481 3.42546 3.79756 4.41719 4.57121 4.99889 5.00433 5.01739 5.18283 5.20379 5.35564 5.48784 5.61191 5.71752 5.72639 5.83967 5.87291 5.93095 6.09702 6.13866 6.16037 6.23332 6.59153 6.61090 6.70792 6.79715 6.93520 7.11263 7.42483 7.50546 7.60963 7.72014 7.88548 8.19739 8.51865 8.94972 9.32421 9.56062 11.01188 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.008812 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.335924 B = 3176.819082 C = 4480.293658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.182 4.182 4 C -0.137 4.137 5 O -0.377 6.377 6 C 0.660 3.340 7 O -0.554 6.554 8 N -0.588 5.588 9 C 0.076 3.924 10 C 0.069 3.931 11 H 0.088 0.912 12 N -0.834 5.834 13 C -0.100 4.100 14 C 0.274 3.726 15 H 0.057 0.943 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.072 3.928 19 N -0.887 5.887 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.333 0.667 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 -5.027 10.683 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.239 4.239 4 C -0.194 4.194 5 O -0.293 6.293 6 C 0.414 3.586 7 O -0.442 6.442 8 N -0.329 5.329 9 C -0.051 4.051 10 C -0.044 4.044 11 H 0.106 0.894 12 N -0.362 5.362 13 C -0.139 4.139 14 C 0.176 3.824 15 H 0.075 0.925 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.131 4.131 19 N -0.524 5.524 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.914 -4.126 9.964 12.300 hybrid contribution -1.457 -0.402 0.994 1.809 sum 4.456 -4.528 10.959 12.667 Atomic orbital electron populations 1.22504 0.94368 1.02655 1.04462 1.21847 0.94226 0.91985 0.82059 1.22499 1.01058 0.95882 1.04434 1.21817 1.01787 1.00907 0.94920 1.86265 1.72395 1.56654 1.14032 1.17533 0.79352 0.81983 0.79776 1.90864 1.40857 1.26439 1.86019 1.47810 1.46302 1.33571 1.05244 1.23001 0.92472 0.90489 0.99098 1.22840 0.97859 0.91425 0.92241 0.89388 1.58935 1.16274 1.05151 1.55850 1.22847 0.93147 0.99907 0.98044 1.19433 0.94422 0.95628 0.72966 0.92466 1.21102 0.91952 1.22906 1.19269 0.92731 1.24883 0.98518 0.94418 0.95317 1.69906 1.35819 1.27368 1.19312 0.86600 0.85475 0.77860 0.77732 1.20122 1.21163 1.20285 0.88798 0.91911 0.92575 0.91836 0.92648 0.89010 0.91850 0.91897 0.90698 0.92145 0.92806 0.85529 0.84593 0.90688 0.91287 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 37.15 0.31 -2.65 16 2 C 0.14 2.17 1.13 -90.62 -0.10 2.07 16 3 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 4 C -0.14 -1.62 8.85 37.16 0.33 -1.29 16 5 O -0.38 -7.28 9.47 -40.33 -0.38 -7.67 16 6 C 0.66 15.07 7.67 54.05 0.41 15.49 16 7 O -0.55 -14.20 11.86 -19.28 -0.23 -14.43 16 8 N -0.59 -13.17 3.06 -170.06 -0.52 -13.68 16 9 C 0.08 1.34 6.59 -2.53 -0.02 1.33 16 10 C 0.07 1.16 4.22 -65.57 -0.28 0.89 16 11 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 12 N -0.83 -11.56 9.42 -2.85 -0.03 -11.59 16 13 C -0.10 -2.13 6.14 -24.90 -0.15 -2.28 16 14 C 0.27 6.87 2.74 -68.10 -0.19 6.68 16 15 H 0.06 1.64 7.69 -51.92 -0.40 1.24 16 16 C -0.51 -14.30 7.86 -34.44 -0.27 -14.57 16 17 H 0.05 1.56 7.82 -52.48 -0.41 1.15 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 19 N -0.89 -25.57 13.01 55.43 0.72 -24.85 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H 0.09 1.89 5.88 -51.93 -0.31 1.58 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.73 5.88 -51.93 -0.31 1.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.33 3.75 9.07 -39.29 -0.36 3.39 16 36 H 0.34 4.53 8.84 -39.29 -0.35 4.19 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.07 1.50 7.67 -51.93 -0.40 1.10 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -31.01 315.74 -6.74 -37.76 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.31 Total: 7.61 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 0.26 Total: 5.10 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.17 Total: -50.12 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.61 Total: -22.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.01 -6.74 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215807537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.603 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds