Wall clock time and date at job start Mon Mar 30 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47362 * 2 1 4 4 C 1.53005 * 109.47090 * 120.00393 * 2 1 3 5 5 O 1.45200 * 109.47033 * 239.99780 * 2 1 3 6 6 C 1.34643 * 116.99800 * 60.00456 * 5 2 1 7 7 O 1.21512 * 119.99781 * 359.97438 * 6 5 2 8 8 N 1.34768 * 119.99825 * 179.97438 * 6 5 2 9 9 C 1.47426 * 125.65253 * 354.95345 * 8 6 5 10 10 C 1.54911 * 104.83460 * 204.08966 * 9 8 6 11 11 H 1.09002 * 110.99889 * 81.06791 * 10 9 8 12 12 N 1.46895 * 111.00558 * 204.91720 * 10 9 8 13 13 C 1.55157 * 101.58281 * 322.99563 * 10 9 8 14 14 C 1.47026 * 125.64915 * 174.64797 * 8 6 5 15 15 H 1.09009 * 109.88028 * 59.56054 * 14 8 6 16 16 C 1.50694 * 109.88249 * 298.39785 * 14 8 6 17 17 H 1.08004 * 120.00145 * 334.96090 * 16 14 8 18 18 C 1.37880 * 120.00168 * 154.95941 * 16 14 8 19 19 N 1.31513 * 120.00188 * 5.01241 * 18 16 14 20 20 Si 1.86803 * 120.00109 * 185.01298 * 18 16 14 21 21 H 1.48501 * 109.47209 * 59.99985 * 20 18 16 22 22 H 1.48498 * 109.47034 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47150 * 300.00330 * 20 18 16 24 24 H 1.09000 * 109.47027 * 59.99876 * 1 2 3 25 25 H 1.08999 * 109.47550 * 299.99852 * 1 2 3 26 26 H 1.09004 * 109.47583 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46872 * 60.00341 * 3 2 1 28 28 H 1.08999 * 109.46908 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47418 * 300.00528 * 3 2 1 30 30 H 1.08996 * 109.47043 * 59.99880 * 4 2 1 31 31 H 1.08996 * 109.47225 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.46727 * 299.99703 * 4 2 1 33 33 H 1.08999 * 110.36742 * 322.93822 * 9 8 6 34 34 H 1.09011 * 110.36411 * 85.25509 * 9 8 6 35 35 H 1.00906 * 111.00377 * 298.55143 * 12 10 9 36 36 H 1.00900 * 111.00176 * 62.50243 * 12 10 9 37 37 H 1.08998 * 110.71772 * 153.86274 * 13 10 9 38 38 H 1.09001 * 110.71621 * 277.13569 * 13 10 9 39 39 H 0.96998 * 120.00353 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 2.0139 -0.6845 -1.1855 6 6 1.6522 -0.1729 -2.3773 7 8 0.9509 0.8183 -2.4252 8 7 2.0680 -0.7600 -3.5168 9 6 3.0018 -1.8973 -3.6064 10 6 3.6217 -1.7909 -5.0221 11 1 4.4286 -1.0585 -5.0411 12 7 4.0917 -3.1013 -5.4909 13 6 2.4084 -1.3037 -5.8576 14 6 1.6605 -0.3765 -4.8765 15 1 1.9354 0.6610 -5.0671 16 6 0.1722 -0.5526 -5.0343 17 1 -0.3571 -1.2588 -4.4117 18 6 -0.5139 0.1878 -5.9735 19 7 0.1424 0.9745 -6.7981 20 14 -2.3757 0.0736 -6.0748 21 1 -2.9687 0.4973 -4.7809 22 1 -2.8678 0.9614 -7.1586 23 1 -2.7706 -1.3283 -6.3647 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6767 1.9562 0.8900 28 1 3.1300 1.4423 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 -1.7490 1.2492 31 1 3.1299 -0.7218 1.2490 32 1 1.6766 -0.2075 2.1392 33 1 3.7773 -1.8122 -2.8452 34 1 2.4640 -2.8392 -3.4975 35 1 4.8117 -3.4653 -4.8849 36 1 3.3251 -3.7523 -5.5730 37 1 2.7421 -0.7510 -6.7358 38 1 1.7767 -2.1437 -6.1462 39 1 -0.3403 1.4957 -7.4586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215807537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:33 Heat of formation + Delta-G solvation = -103.912200 kcal Electronic energy + Delta-G solvation = -20505.387607 eV Core-core repulsion = 17446.978186 eV Total energy + Delta-G solvation = -3058.409421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63980 -39.71337 -37.45099 -35.12484 -35.06992 -34.00177 -30.99618 -28.83842 -28.34679 -28.24500 -26.57718 -24.50821 -22.12604 -21.42843 -20.24873 -18.95493 -18.52532 -17.68745 -17.06546 -16.81166 -16.59309 -15.80159 -15.60647 -15.10909 -14.82950 -14.59535 -14.35540 -13.91444 -13.74755 -13.42714 -13.23288 -13.03829 -12.89672 -12.83346 -12.80264 -12.47641 -12.46159 -12.28449 -12.20691 -12.07859 -11.76116 -11.34061 -11.24510 -10.91284 -10.57685 -9.73287 -9.41473 -8.20204 -6.30790 1.29630 1.35532 1.39383 1.44767 2.03935 2.37776 3.00132 3.24395 3.69875 3.80340 3.82072 3.84081 3.98995 4.01825 4.25382 4.51235 4.61584 4.62251 4.66472 4.76132 4.76620 4.83030 4.86422 4.90322 5.11697 5.15542 5.23626 5.32398 5.40722 5.42830 5.56758 5.70423 5.81904 6.12597 6.22705 6.61359 6.69829 6.91860 7.35034 7.61277 8.85959 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.008812 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.335924 B = 3176.819082 C = 4480.293658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.120 3.880 3 C -0.177 4.177 4 C -0.127 4.127 5 O -0.371 6.371 6 C 0.655 3.345 7 O -0.592 6.592 8 N -0.599 5.599 9 C 0.077 3.923 10 C 0.091 3.909 11 H 0.093 0.907 12 N -0.827 5.827 13 C -0.091 4.091 14 C 0.277 3.723 15 H 0.010 0.990 16 C -0.526 4.526 17 H 0.040 0.960 18 C 0.023 3.977 19 N -0.914 5.914 20 Si 0.951 3.049 21 H -0.286 1.286 22 H -0.276 1.276 23 H -0.262 1.262 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.354 0.646 36 H 0.348 0.652 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -6.725 12.512 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.083 3.917 3 C -0.234 4.234 4 C -0.184 4.184 5 O -0.287 6.287 6 C 0.409 3.591 7 O -0.483 6.483 8 N -0.339 5.339 9 C -0.048 4.048 10 C -0.022 4.022 11 H 0.111 0.889 12 N -0.358 5.358 13 C -0.130 4.130 14 C 0.177 3.823 15 H 0.028 0.972 16 C -0.564 4.564 17 H 0.058 0.942 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.212 1.212 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.796 -5.876 11.816 14.843 hybrid contribution -1.696 0.145 0.528 1.782 sum 5.101 -5.730 12.344 14.534 Atomic orbital electron populations 1.22455 0.94931 1.02493 1.03782 1.22420 0.94162 0.92892 0.82182 1.22439 1.01570 0.95548 1.03859 1.21833 1.02442 1.00954 0.93204 1.86270 1.72134 1.56684 1.13596 1.17727 0.78917 0.81572 0.80838 1.90853 1.42427 1.28137 1.86856 1.47753 1.47022 1.34777 1.04357 1.23255 0.92181 0.89101 1.00254 1.22550 0.96044 0.93150 0.90484 0.88875 1.58827 1.16901 1.03973 1.56050 1.22537 0.94780 0.98726 0.97001 1.19155 0.93648 0.94129 0.75373 0.97212 1.21304 0.93646 1.22682 1.18811 0.94183 1.25604 1.02566 0.94341 0.95197 1.70004 1.37194 1.28175 1.19924 0.85725 0.80640 0.78703 0.77271 1.21222 1.20090 1.18673 0.93382 0.88599 0.92415 0.88679 0.91721 0.93244 0.91356 0.90874 0.87623 0.89633 0.91753 0.83119 0.83852 0.92222 0.91751 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.69 8.37 71.98 0.60 -5.09 16 2 C 0.12 3.63 1.13 -10.80 -0.01 3.61 16 3 C -0.18 -5.26 8.37 71.98 0.60 -4.65 16 4 C -0.13 -2.52 8.85 71.98 0.64 -1.88 16 5 O -0.37 -14.05 9.47 -55.52 -0.53 -14.57 16 6 C 0.65 30.60 7.67 129.79 1.00 31.59 16 7 O -0.59 -31.94 11.86 19.80 0.23 -31.70 16 8 N -0.60 -27.17 3.06 -922.35 -2.82 -29.99 16 9 C 0.08 2.60 6.59 86.86 0.57 3.17 16 10 C 0.09 2.93 4.22 46.31 0.20 3.13 16 11 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 12 N -0.83 -20.61 9.42 -162.93 -1.53 -22.15 16 13 C -0.09 -3.93 6.14 31.78 0.20 -3.73 16 14 C 0.28 14.42 2.74 44.59 0.12 14.54 16 15 H 0.01 0.60 7.69 -2.38 -0.02 0.58 16 16 C -0.53 -30.33 7.86 25.60 0.20 -30.13 16 17 H 0.04 2.37 7.82 -2.91 -0.02 2.34 16 18 C 0.02 1.36 5.45 84.66 0.46 1.82 16 19 N -0.91 -54.60 13.01 21.45 0.28 -54.32 16 20 Si 0.95 46.13 29.54 68.60 2.03 48.16 16 21 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H 0.05 1.99 5.88 -2.39 -0.01 1.98 16 25 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.92 5.88 -2.39 -0.01 1.90 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 2.48 8.10 -2.39 -0.02 2.46 16 34 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.35 6.65 9.07 -89.69 -0.81 5.83 16 36 H 0.35 8.28 8.84 -89.69 -0.79 7.48 16 37 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.06 2.80 7.67 -2.39 -0.02 2.79 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -71.48 315.74 1.68 -69.81 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.56 Total: 22.40 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 4.57 Total: 12.37 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.07 Total: -106.46 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.29 Total: -46.27 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.48 1.68 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215807537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.106 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds