Wall clock time and date at job start Mon Mar 30 2020 04:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.53000 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47152 * 57.77149 * 4 3 2 6 6 C 1.50695 * 109.46836 * 177.77444 * 4 3 2 7 7 O 1.20831 * 120.00017 * 120.00042 * 6 4 3 8 8 O 1.34236 * 120.00153 * 299.99755 * 6 4 3 9 9 N 1.46896 * 109.47183 * 297.77311 * 4 3 2 10 10 C 1.46894 * 111.00223 * 176.09758 * 9 4 3 11 11 C 1.53239 * 109.34466 * 187.25473 * 10 9 4 12 12 N 1.47079 * 108.51800 * 306.17298 * 11 10 9 13 13 C 1.36941 * 120.88109 * 231.18163 * 12 11 10 14 14 H 1.08005 * 119.99636 * 26.70204 * 13 12 11 15 15 C 1.38804 * 120.00357 * 206.70365 * 13 12 11 16 16 N 1.31618 * 120.00232 * 17.53444 * 15 13 12 17 17 Si 1.86800 * 120.00202 * 197.53905 * 15 13 12 18 18 H 1.48503 * 109.46998 * 270.00017 * 17 15 13 19 19 H 1.48501 * 109.47022 * 29.99759 * 17 15 13 20 20 H 1.48501 * 109.47285 * 149.99619 * 17 15 13 21 21 C 1.47074 * 118.24043 * 51.45588 * 12 11 10 22 22 C 1.46904 * 111.00004 * 300.40244 * 9 4 3 23 23 H 1.08993 * 109.47210 * 59.99974 * 1 2 3 24 24 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46794 * 299.99923 * 1 2 3 26 26 H 1.09001 * 109.46794 * 240.00077 * 2 1 3 27 27 H 1.08993 * 109.47210 * 120.00026 * 2 1 3 28 28 H 1.09000 * 109.47099 * 59.99886 * 3 2 1 29 29 H 1.08999 * 109.46834 * 300.00286 * 3 2 1 30 30 H 0.96700 * 116.99668 * 179.97438 * 8 6 4 31 31 H 1.09003 * 109.49176 * 67.29046 * 10 9 4 32 32 H 1.08998 * 109.49395 * 307.21386 * 10 9 4 33 33 H 1.08991 * 109.63296 * 186.46191 * 11 10 9 34 34 H 1.09002 * 109.62922 * 65.87635 * 11 10 9 35 35 H 0.96995 * 120.00418 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.63065 * 68.25475 * 21 12 11 37 37 H 1.09003 * 109.63298 * 188.83026 * 21 12 11 38 38 H 1.08998 * 109.49005 * 292.70282 * 22 9 4 39 39 H 1.09000 * 109.49109 * 52.78325 * 22 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9330 0.8946 -0.8702 6 6 4.0723 2.8623 -0.0558 7 8 4.7673 3.2922 0.8341 8 8 3.7476 3.6492 -1.0937 9 7 4.0602 0.7970 1.2245 10 6 5.5257 0.6956 1.2160 11 6 5.9836 -0.1396 2.4163 12 7 5.4076 0.4428 3.6378 13 6 6.1979 0.7360 4.7171 14 1 7.2451 0.9588 4.5748 15 6 5.6532 0.7466 5.9937 16 7 4.5000 0.1548 6.2222 17 14 6.5567 1.6011 7.3876 18 1 7.4670 0.6349 8.0532 19 1 7.3487 2.7333 6.8435 20 1 5.5726 2.1145 8.3742 21 6 3.9592 0.6965 3.6717 22 6 3.5819 1.5044 2.4198 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 4.0930 4.5524 -1.0847 31 1 5.9596 1.6935 1.2804 32 1 5.8517 0.2157 0.2933 33 1 7.0715 -0.1228 2.4805 34 1 5.6367 -1.1666 2.3016 35 1 4.1192 0.1625 7.1142 36 1 3.4214 -0.2516 3.6754 37 1 3.7081 1.2664 4.5663 38 1 4.0429 2.4909 2.4675 39 1 2.4982 1.6109 2.3701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216571392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:31 Heat of formation + Delta-G solvation = -60.670974 kcal Electronic energy + Delta-G solvation = -20536.426586 eV Core-core repulsion = 17479.892245 eV Total energy + Delta-G solvation = -3056.534341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64519 -37.94979 -35.90596 -35.54886 -33.44936 -31.34436 -29.88547 -29.24022 -26.00896 -24.75598 -22.81970 -22.60459 -21.25048 -20.26923 -19.12018 -17.92139 -17.03044 -16.03498 -15.82504 -15.44925 -14.67798 -14.45362 -14.14635 -13.64708 -13.40509 -13.31832 -13.05933 -13.02124 -12.32771 -12.24285 -11.64442 -11.53496 -11.26293 -11.10717 -11.04244 -10.94793 -10.67284 -10.54519 -10.41542 -10.35507 -10.09734 -9.95140 -9.67360 -9.53429 -8.45092 -7.82214 -6.59233 -5.72075 -3.11562 2.31582 3.17942 3.41860 3.48499 3.52216 4.23171 4.56299 4.81027 5.04004 5.14697 5.33100 5.43771 5.45302 5.48507 5.63658 5.72846 5.86400 5.94710 6.00347 6.05271 6.15495 6.23569 6.27802 6.36241 6.47599 6.56290 6.63413 6.72983 6.77403 6.98960 7.29412 7.44562 7.66348 7.73211 7.86776 8.04748 8.50079 9.27907 9.91612 10.49933 11.36930 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.006419 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.976018 B = 4360.857331 C = 4873.105066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.107 4.107 4 C 0.092 3.908 5 H 0.112 0.888 6 C 0.440 3.560 7 O -0.497 6.497 8 O -0.526 6.526 9 N -0.493 5.493 10 C 0.025 3.975 11 C 0.153 3.847 12 N -0.593 5.593 13 C -0.247 4.247 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.904 5.904 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.280 1.280 20 H -0.290 1.290 21 C 0.183 3.817 22 C 0.011 3.989 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.399 0.601 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 2.882 -15.038 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.020 4.020 5 H 0.130 0.870 6 C 0.280 3.720 7 O -0.384 6.384 8 O -0.337 6.337 9 N -0.217 5.217 10 C -0.104 4.104 11 C 0.026 3.974 12 N -0.316 5.316 13 C -0.377 4.377 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.549 5.549 17 Si 0.731 3.269 18 H -0.214 1.214 19 H -0.206 1.206 20 H -0.216 1.216 21 C 0.057 3.943 22 C -0.117 4.117 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.949 2.104 -14.582 15.889 hybrid contribution 1.023 1.923 0.706 2.290 sum -4.926 4.028 -13.877 15.266 Atomic orbital electron populations 1.21779 0.96297 1.01462 1.01362 1.21412 0.94904 0.95576 1.03396 1.21653 0.91120 0.98959 1.02725 1.21938 0.97549 0.84939 0.97538 0.86989 1.25785 0.77485 0.90197 0.78543 1.90740 1.35311 1.75047 1.37299 1.84626 1.72577 1.28571 1.47887 1.62571 1.11558 1.47306 1.00263 1.22903 0.86653 1.01210 0.99596 1.20921 0.96433 0.94101 0.85966 1.44090 1.04116 1.71519 1.11862 1.19173 0.93452 1.40218 0.84824 0.91795 1.24982 0.97835 0.99850 0.97131 1.70029 1.19860 1.44306 1.20750 0.86322 0.78831 0.79657 0.82135 1.21449 1.20604 1.21598 1.20907 0.83828 0.96438 0.93163 1.23384 0.98325 0.98571 0.91467 0.93292 0.92801 0.92803 0.92236 0.89889 0.91111 0.90946 0.74292 0.92634 0.92449 0.92646 0.95813 0.93728 0.95754 0.89460 0.92360 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.34 5.80 -26.72 -0.15 -1.49 16 3 C -0.11 -1.29 4.37 -26.73 -0.12 -1.41 16 4 C 0.09 1.29 2.31 -68.87 -0.16 1.13 16 5 H 0.11 1.37 8.08 -51.93 -0.42 0.95 16 6 C 0.44 6.56 7.05 36.00 0.25 6.81 16 7 O -0.50 -9.41 12.40 -18.75 -0.23 -9.65 16 8 O -0.53 -6.00 13.28 -39.27 -0.52 -6.53 16 9 N -0.49 -8.72 3.95 -227.44 -0.90 -9.61 16 10 C 0.03 0.48 5.19 -3.70 -0.02 0.46 16 11 C 0.15 3.37 6.69 -3.60 -0.02 3.34 16 12 N -0.59 -15.56 3.03 -171.74 -0.52 -16.08 16 13 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 14 H 0.06 1.80 7.89 -52.48 -0.41 1.39 16 15 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 16 N -0.90 -26.81 11.17 55.49 0.62 -26.19 16 17 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.18 4.54 5.45 -3.37 -0.02 4.52 16 22 C 0.01 0.22 4.93 -3.46 -0.02 0.20 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 28 H 0.07 0.94 6.13 -51.93 -0.32 0.62 16 29 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 30 H 0.40 3.07 9.10 45.56 0.41 3.48 16 31 H 0.06 1.17 5.87 -51.93 -0.31 0.86 16 32 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 38 H 0.06 1.33 5.59 -51.93 -0.29 1.03 16 39 H 0.06 1.10 5.89 -51.93 -0.31 0.80 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -32.33 304.61 -7.39 -39.72 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.28 Total: 1.30 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.12 Total: 5.12 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.80 Total: -51.88 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.75 Total: -16.17 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.33 -7.39 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216571392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.952 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds