Wall clock time and date at job start Mon Mar 30 2020 04:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00127 * 2 1 4 4 C 1.52995 * 109.47045 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 65.60551 * 4 3 2 6 6 C 1.33726 * 118.53821 * 274.99435 * 5 4 3 7 7 O 1.21281 * 118.61960 * 358.27010 * 6 5 4 8 8 C 1.50255 * 122.75035 * 178.28995 * 6 5 4 9 9 H 1.09001 * 109.38346 * 257.15081 * 8 6 5 10 10 C 1.50699 * 109.38809 * 137.35868 * 8 6 5 11 11 H 1.07999 * 119.99204 * 359.97438 * 10 8 6 12 12 C 1.37869 * 120.00285 * 179.72121 * 10 8 6 13 13 N 1.31515 * 120.00074 * 0.27892 * 12 10 8 14 14 Si 1.86799 * 120.00287 * 180.27352 * 12 10 8 15 15 H 1.48498 * 109.46960 * 89.99888 * 14 12 10 16 16 H 1.48497 * 109.47413 * 210.00164 * 14 12 10 17 17 H 1.48502 * 109.46913 * 330.00239 * 14 12 10 18 18 N 1.46906 * 109.98187 * 17.20099 * 8 6 5 19 19 C 1.47189 * 110.17092 * 309.70418 * 18 8 6 20 20 C 1.46016 * 118.53744 * 94.97151 * 5 4 3 21 21 C 1.52992 * 109.37247 * 318.36285 * 20 5 4 22 22 C 1.52998 * 109.37282 * 78.12503 * 20 5 4 23 23 H 1.08991 * 109.47490 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46776 * 300.00413 * 1 2 3 25 25 H 1.08995 * 109.47078 * 59.99930 * 1 2 3 26 26 H 1.08999 * 109.46914 * 59.99858 * 3 2 1 27 27 H 1.08996 * 109.46861 * 299.99795 * 3 2 1 28 28 H 1.09008 * 109.47390 * 305.60652 * 4 3 2 29 29 H 1.08999 * 109.47475 * 185.60807 * 4 3 2 30 30 H 0.97000 * 120.00561 * 179.97438 * 13 12 10 31 31 H 1.00894 * 110.99876 * 73.06664 * 18 8 6 32 32 H 1.09000 * 109.59345 * 309.22036 * 19 18 8 33 33 H 1.09008 * 109.59344 * 188.77335 * 19 18 8 34 34 H 1.08996 * 109.47425 * 59.99622 * 21 20 5 35 35 H 1.09006 * 109.47154 * 179.97438 * 21 20 5 36 36 H 1.09008 * 109.47166 * 299.99389 * 21 20 5 37 37 H 1.09005 * 109.47477 * 54.63275 * 22 20 5 38 38 H 1.09006 * 109.46920 * 174.62954 * 22 20 5 39 39 H 1.08991 * 109.47279 * 294.63249 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9767 0.5776 -1.2588 6 6 3.9879 -0.7561 -1.3552 7 8 3.6630 -1.4113 -0.3877 8 6 4.3866 -1.4769 -2.6119 9 1 3.4928 -1.8366 -3.1217 10 6 5.2667 -2.6482 -2.2591 11 1 5.5115 -2.8477 -1.2263 12 6 5.7551 -3.4679 -3.2542 13 7 5.4574 -3.2246 -4.5119 14 14 6.8398 -4.9243 -2.8162 15 1 5.9921 -6.1221 -2.5884 16 1 7.7843 -5.1910 -3.9306 17 1 7.6054 -4.6176 -1.5812 18 7 5.1199 -0.5665 -3.5016 19 6 4.3695 0.6878 -3.6747 20 6 4.3843 1.4558 -2.3518 21 6 3.4174 2.6382 -2.4402 22 6 5.7984 1.9754 -2.0850 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8508 0.5592 0.8347 29 1 3.9785 2.1754 0.0998 30 1 5.8013 -3.8011 -5.2121 31 1 6.0482 -0.3868 -3.1496 32 1 3.3405 0.4625 -3.9551 33 1 4.8389 1.2904 -4.4524 34 1 3.4344 3.1925 -1.5019 35 1 3.7204 3.2952 -3.2555 36 1 2.4085 2.2694 -2.6262 37 1 6.4706 1.1328 -1.9228 38 1 6.1410 2.5535 -2.9433 39 1 5.7911 2.6101 -1.1990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221901970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:22 Heat of formation + Delta-G solvation = -64.522654 kcal Electronic energy + Delta-G solvation = -20988.416359 eV Core-core repulsion = 17931.714997 eV Total energy + Delta-G solvation = -3056.701362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07970 -37.41453 -36.49680 -34.54608 -32.29531 -31.32374 -29.20884 -27.43595 -27.09938 -26.09773 -23.88590 -23.43951 -21.56091 -20.90655 -17.61758 -16.77665 -16.53831 -15.89356 -15.50323 -15.19039 -14.77395 -14.34125 -14.14590 -13.84754 -13.46625 -13.17236 -12.87619 -12.62531 -12.11991 -12.07058 -11.92297 -11.83160 -11.50362 -11.21181 -11.03396 -10.94494 -10.82856 -10.77078 -10.60065 -10.36111 -9.97597 -9.36739 -9.21735 -8.86548 -8.42955 -8.00258 -6.88536 -5.90422 -4.02442 3.38418 3.44199 3.48396 3.64555 3.87350 4.11248 4.52792 4.96113 5.11149 5.25483 5.26978 5.31148 5.35602 5.44273 5.50793 5.55351 5.62746 5.68664 5.74369 5.83544 5.85624 5.89014 5.96039 6.08449 6.20031 6.26238 6.38111 6.44547 6.56905 7.13776 7.32018 7.50435 7.82470 7.96675 8.34241 8.50523 8.74317 9.08452 9.40819 9.64904 11.14589 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.007912 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.319427 B = 3537.976568 C = 4224.278449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.043 3.957 4 C 0.113 3.887 5 N -0.609 5.609 6 C 0.492 3.508 7 O -0.532 6.532 8 C 0.216 3.784 9 H 0.068 0.932 10 C -0.523 4.523 11 H 0.064 0.936 12 C 0.080 3.920 13 N -0.850 5.850 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 N -0.641 5.641 19 C 0.051 3.949 20 C 0.127 3.873 21 C -0.152 4.152 22 C -0.157 4.157 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.258 0.742 31 H 0.331 0.669 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 13.754 3.733 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.035 4.035 4 C -0.011 4.011 5 N -0.345 5.345 6 C 0.281 3.719 7 O -0.405 6.405 8 C 0.105 3.895 9 H 0.085 0.915 10 C -0.562 4.562 11 H 0.082 0.918 12 C -0.127 4.127 13 N -0.485 5.485 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 N -0.271 5.271 19 C -0.081 4.081 20 C 0.039 3.961 21 C -0.211 4.211 22 C -0.215 4.215 23 H 0.101 0.899 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.911 12.803 3.439 14.137 hybrid contribution 0.362 0.153 1.062 1.132 sum -4.548 12.956 4.501 14.450 Atomic orbital electron populations 1.22688 0.82535 1.02481 0.98843 1.88253 1.18110 1.26295 1.95020 1.23117 0.95294 0.85741 0.99355 1.21268 0.91656 0.98498 0.89691 1.47832 1.67594 1.06273 1.12813 1.22521 0.75770 0.80581 0.93065 1.90563 1.46843 1.64368 1.38763 1.19300 0.96471 0.90484 0.83202 0.91508 1.20792 1.32012 1.09760 0.93633 0.91755 1.24953 0.95898 0.96931 0.94897 1.70117 1.42774 1.36723 0.98871 0.86602 0.80403 0.83050 0.77926 1.20638 1.21278 1.19934 1.61308 1.04435 1.08485 1.52860 1.22469 1.00331 0.92530 0.92746 1.21278 0.93654 0.91056 0.90071 1.22234 0.99577 0.97547 1.01709 1.22219 0.96670 1.01342 1.01290 0.89872 0.94902 0.94816 0.93784 0.93331 0.89855 0.90202 0.93269 0.84997 0.91431 0.90663 0.92745 0.91628 0.92280 0.91808 0.91779 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.64 8.83 -53.33 -0.47 -7.12 16 3 C 0.04 0.64 6.05 37.16 0.22 0.86 16 4 C 0.11 1.80 4.99 -4.05 -0.02 1.78 16 5 N -0.61 -11.33 2.36 -159.67 -0.38 -11.71 16 6 C 0.49 11.77 6.67 -11.67 -0.08 11.69 16 7 O -0.53 -14.46 14.22 -12.55 -0.18 -14.64 16 8 C 0.22 5.58 2.56 -70.23 -0.18 5.40 16 9 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 10 C -0.52 -14.95 8.31 -34.44 -0.29 -15.23 16 11 H 0.06 1.93 7.39 -52.49 -0.39 1.55 16 12 C 0.08 2.24 5.39 -17.82 -0.10 2.15 16 13 N -0.85 -24.34 12.75 55.43 0.71 -23.63 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 N -0.64 -14.51 5.98 -109.21 -0.65 -15.16 16 19 C 0.05 0.90 5.37 -3.68 -0.02 0.88 16 20 C 0.13 1.95 0.85 -132.10 -0.11 1.84 16 21 C -0.15 -1.82 7.12 37.15 0.26 -1.55 16 22 C -0.16 -2.15 8.34 37.16 0.31 -1.84 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.66 5.78 -51.93 -0.30 0.36 16 28 H 0.08 1.53 7.38 -51.92 -0.38 1.15 16 29 H 0.08 1.00 6.43 -51.93 -0.33 0.67 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 7.45 7.08 -39.30 -0.28 7.17 16 32 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.08 1.17 8.08 -51.92 -0.42 0.75 16 34 H 0.05 0.58 6.51 -51.93 -0.34 0.24 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.75 6.97 -51.92 -0.36 0.38 16 37 H 0.06 1.01 6.97 -51.93 -0.36 0.65 16 38 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.05 0.62 7.68 -51.93 -0.40 0.22 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -32.69 305.22 -6.35 -39.04 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.07 Total: 4.33 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 1.12 Total: 7.53 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.32 Total: -50.50 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.65 Total: -21.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.69 -6.35 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221901970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.487 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds