Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.47182 * 180.02562 * 15 14 13 17 17 H 1.08992 * 109.47717 * 305.02264 * 16 15 14 18 18 C 1.53090 * 109.47895 * 184.99876 * 16 15 14 19 19 C 1.53179 * 109.16121 * 182.40975 * 18 16 15 20 20 C 1.53177 * 109.03851 * 56.97652 * 19 18 16 21 21 C 1.53089 * 109.16616 * 303.02350 * 20 19 18 22 22 O 1.42906 * 109.41582 * 57.60718 * 21 20 19 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.00898 * 110.99877 * 56.04636 * 13 12 10 28 28 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 29 29 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 30 30 H 1.09005 * 109.46860 * 299.99699 * 15 14 13 31 31 H 1.09002 * 109.47639 * 60.00040 * 15 14 13 32 32 H 1.09001 * 109.52606 * 302.30989 * 18 16 15 33 33 H 1.08992 * 109.52518 * 62.43901 * 18 16 15 34 34 H 1.08993 * 109.54651 * 176.84547 * 19 18 16 35 35 H 1.09006 * 109.54301 * 297.11226 * 19 18 16 36 36 H 1.08997 * 109.52085 * 62.92878 * 20 19 18 37 37 H 1.09000 * 109.52571 * 183.11448 * 20 19 18 38 38 H 1.09001 * 109.48637 * 177.58737 * 21 20 19 39 39 H 1.09007 * 109.48106 * 297.62499 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 2.5233 -8.4067 -0.0015 16 6 1.7940 -9.7518 -0.0021 17 1 1.1020 -9.7904 0.8391 18 6 2.8145 -10.8859 0.1238 19 6 2.0826 -12.2301 0.0619 20 6 1.2871 -12.3061 -1.2449 21 6 0.3256 -11.1171 -1.3180 22 8 1.0678 -9.8995 -1.2240 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 2.8335 -5.9126 0.7798 28 1 0.8738 -7.3454 0.8886 29 1 0.8731 -7.3451 -0.8914 30 1 3.1482 -8.3323 -0.8915 31 1 3.1482 -8.3323 0.8885 32 1 3.5314 -10.8235 -0.6950 33 1 3.3397 -10.7995 1.0750 34 1 2.8085 -13.0424 0.0946 35 1 1.4014 -12.3137 0.9088 36 1 1.9731 -12.2724 -2.0913 37 1 0.7192 -13.2361 -1.2721 38 1 -0.2126 -11.1424 -2.2655 39 1 -0.3858 -11.1737 -0.4940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224014838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = -103.102069 kcal Electronic energy + Delta-G solvation = -18598.014220 eV Core-core repulsion = 15539.639929 eV Total energy + Delta-G solvation = -3058.374291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66032 -38.21425 -35.83636 -33.88205 -33.83570 -32.72205 -31.16577 -29.25764 -26.47036 -24.86361 -23.98393 -22.72342 -21.27574 -20.45752 -19.15601 -17.83159 -16.68805 -16.27615 -16.00276 -15.42287 -14.88153 -14.85076 -14.50539 -14.22784 -13.83892 -13.65665 -13.48572 -13.15031 -12.91818 -12.32789 -12.17078 -11.81923 -11.52507 -11.44900 -11.39020 -11.16998 -11.02821 -10.90397 -10.85854 -10.41988 -10.39826 -10.17018 -9.59296 -9.45672 -8.39210 -7.96739 -7.90177 -6.37324 -3.78094 3.23384 3.28483 3.33222 3.60818 3.96708 4.11826 4.29893 4.51754 4.58853 4.62808 4.73365 4.94397 5.11986 5.14582 5.21306 5.28937 5.30059 5.34301 5.45910 5.51471 5.55136 5.67164 5.71005 5.76215 5.86268 5.88352 5.99315 6.07329 6.19792 6.24405 6.34987 7.10347 7.33076 7.59129 7.77818 8.11075 8.66500 9.22301 9.59458 10.11352 10.80525 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.066437 B = 0.002885 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.352031 B = 9702.605901 C = 9972.521977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.062 3.938 15 C -0.110 4.110 16 C 0.093 3.907 17 H 0.056 0.944 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.374 6.374 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.346 0.654 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -22.702 0.909 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.147 4.147 16 C 0.035 3.965 17 H 0.074 0.926 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.293 6.293 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.165 0.835 28 H 0.040 0.960 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.597 -22.368 0.083 22.376 hybrid contribution -0.639 0.530 1.116 1.391 sum -1.236 -21.837 1.199 21.905 Atomic orbital electron populations 1.69610 1.05930 1.28205 1.50722 1.25259 0.95638 0.99702 0.97399 0.85913 0.78742 0.80466 0.79061 1.19883 1.21004 1.19941 1.19660 0.93348 0.82284 1.47569 0.87991 1.41863 1.09201 1.04593 1.64513 1.19849 0.88388 0.84759 0.84278 1.90515 1.13798 1.87110 1.55346 1.21663 0.94384 0.90942 1.01173 1.60072 1.18936 1.00121 1.51105 1.21924 0.95568 0.88629 1.00587 1.21579 0.98136 0.91400 1.03612 1.22110 0.92675 0.94797 0.86966 0.92625 1.22212 0.98863 0.94740 1.03043 1.21589 0.99328 0.97556 0.97555 1.22198 0.99574 0.99022 0.98696 1.22542 0.93035 0.84153 1.01964 1.88001 1.64270 1.38487 1.38522 0.91859 0.77447 0.94005 0.89586 0.83464 0.96023 0.90381 0.89963 0.90640 0.90821 0.90854 0.91573 0.91955 0.91013 0.91124 0.88967 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.55 9.68 -14.94 -0.14 -8.69 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.79 5.29 -10.96 -0.06 -14.85 16 10 C 0.44 10.87 7.82 -10.98 -0.09 10.79 16 11 O -0.58 -16.40 15.78 5.55 0.09 -16.32 16 12 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 13 N -0.67 -11.68 6.13 -115.05 -0.70 -12.38 16 14 C 0.06 0.86 5.58 -3.82 -0.02 0.84 16 15 C -0.11 -1.28 5.18 -26.73 -0.14 -1.42 16 16 C 0.09 0.95 2.64 -26.68 -0.07 0.88 16 17 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 18 C -0.15 -1.28 5.42 -26.59 -0.14 -1.42 16 19 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 20 C -0.16 -1.14 6.14 -26.59 -0.16 -1.30 16 21 C 0.06 0.51 6.84 37.20 0.25 0.77 16 22 O -0.37 -4.34 9.94 -35.23 -0.35 -4.69 16 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -31.93 321.67 -7.77 -39.70 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.49 Total: 10.81 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.80 Total: 0.81 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.04 Total: -51.56 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.26 Total: -21.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.93 -7.77 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224014838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.405 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds