Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.47182 * 180.02562 * 15 14 13 17 17 H 1.08992 * 109.47717 * 305.02264 * 16 15 14 18 18 C 1.53090 * 109.47895 * 184.99876 * 16 15 14 19 19 C 1.53179 * 109.16121 * 182.40975 * 18 16 15 20 20 C 1.53177 * 109.03851 * 56.97652 * 19 18 16 21 21 C 1.53089 * 109.16616 * 303.02350 * 20 19 18 22 22 O 1.42906 * 109.41582 * 57.60718 * 21 20 19 23 23 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 26 26 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 27 27 H 1.00898 * 110.99877 * 56.04636 * 13 12 10 28 28 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 29 29 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 30 30 H 1.09005 * 109.46860 * 299.99699 * 15 14 13 31 31 H 1.09002 * 109.47639 * 60.00040 * 15 14 13 32 32 H 1.09001 * 109.52606 * 302.30989 * 18 16 15 33 33 H 1.08992 * 109.52518 * 62.43901 * 18 16 15 34 34 H 1.08993 * 109.54651 * 176.84547 * 19 18 16 35 35 H 1.09006 * 109.54301 * 297.11226 * 19 18 16 36 36 H 1.08997 * 109.52085 * 62.92878 * 20 19 18 37 37 H 1.09000 * 109.52571 * 183.11448 * 20 19 18 38 38 H 1.09001 * 109.48637 * 177.58737 * 21 20 19 39 39 H 1.09007 * 109.48106 * 297.62499 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0016 15 6 2.5233 -8.4067 -0.0015 16 6 1.7940 -9.7518 -0.0021 17 1 1.1020 -9.7904 0.8391 18 6 2.8145 -10.8859 0.1238 19 6 2.0826 -12.2301 0.0619 20 6 1.2871 -12.3061 -1.2449 21 6 0.3256 -11.1171 -1.3180 22 8 1.0678 -9.8995 -1.2240 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6170 -4.9209 0.8886 26 1 0.6176 -4.9205 -0.8913 27 1 2.8335 -5.9126 0.7798 28 1 0.8738 -7.3454 0.8886 29 1 0.8731 -7.3451 -0.8914 30 1 3.1482 -8.3323 -0.8915 31 1 3.1482 -8.3323 0.8885 32 1 3.5314 -10.8235 -0.6950 33 1 3.3397 -10.7995 1.0750 34 1 2.8085 -13.0424 0.0946 35 1 1.4014 -12.3137 0.9088 36 1 1.9731 -12.2724 -2.0913 37 1 0.7192 -13.2361 -1.2721 38 1 -0.2126 -11.1424 -2.2655 39 1 -0.3858 -11.1737 -0.4940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224014838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = -126.440352 kcal Electronic energy + Delta-G solvation = -18599.026244 eV Core-core repulsion = 15539.639929 eV Total energy + Delta-G solvation = -3059.386315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43129 -40.11013 -37.16147 -35.90170 -34.51596 -33.76003 -33.23168 -30.30741 -27.96719 -26.19234 -25.13870 -23.74623 -22.26922 -21.10417 -21.06043 -19.91073 -17.83487 -17.50957 -16.97225 -16.92334 -16.43902 -15.98041 -15.59367 -15.50396 -15.27823 -14.90006 -14.75655 -14.36360 -13.82802 -13.60142 -13.50087 -13.35567 -12.97789 -12.81178 -12.53794 -12.43337 -12.12574 -12.11660 -12.03720 -11.83124 -11.53976 -11.50757 -11.14167 -10.38344 -10.28913 -10.02768 -9.32982 -8.46907 -5.96225 1.40089 1.41745 1.53166 2.03784 2.29226 2.84801 2.94877 3.19967 3.50069 3.84802 3.92138 3.97820 4.05420 4.15707 4.29862 4.33743 4.39296 4.43236 4.51103 4.58884 4.59727 4.70301 4.79285 4.88854 4.95182 5.08397 5.12320 5.14444 5.21048 5.28590 5.40160 5.43033 5.88763 6.10173 6.38733 6.43156 6.59356 7.11434 7.54805 8.10050 8.70426 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.066437 B = 0.002885 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.352031 B = 9702.605901 C = 9972.521977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.067 3.933 15 C -0.105 4.105 16 C 0.094 3.906 17 H 0.065 0.935 18 C -0.149 4.149 19 C -0.122 4.122 20 C -0.155 4.155 21 C 0.053 3.947 22 O -0.402 6.402 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.345 0.655 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -23.573 1.462 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.319 5.319 14 C -0.061 4.061 15 C -0.142 4.142 16 C 0.036 3.964 17 H 0.083 0.917 18 C -0.187 4.187 19 C -0.159 4.159 20 C -0.192 4.192 21 C -0.024 4.024 22 O -0.321 6.321 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.163 0.837 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.277 -23.266 0.634 23.309 hybrid contribution -0.461 0.751 0.926 1.278 sum -1.738 -22.515 1.560 22.636 Atomic orbital electron populations 1.69673 1.06879 1.29437 1.50195 1.26077 0.96581 1.02502 0.96164 0.84964 0.77751 0.76464 0.79002 1.19737 1.19380 1.19546 1.19655 0.92751 0.84030 1.50133 0.90278 1.41934 1.09350 1.04716 1.64995 1.20858 0.88253 0.86148 0.82245 1.90481 1.15835 1.87969 1.56706 1.21527 0.94078 0.88214 1.02950 1.60074 1.19303 1.01111 1.51378 1.21941 0.95972 0.87350 1.00867 1.21541 0.97682 0.91714 1.03311 1.22105 0.93078 0.94314 0.86896 0.91723 1.22194 0.98390 0.94937 1.03201 1.21609 0.99605 0.96968 0.97757 1.22184 0.99353 0.99261 0.98449 1.22735 0.93306 0.83614 1.02713 1.87958 1.64848 1.40126 1.39209 0.91228 0.76948 0.91491 0.88213 0.83684 0.94363 0.91199 0.91801 0.89433 0.91889 0.89758 0.90520 0.91130 0.91907 0.89284 0.88392 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 2 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 3 Si 0.99 43.54 29.55 68.60 2.03 45.56 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.34 -19.56 9.68 84.04 0.81 -18.74 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.38 5.29 -306.98 -1.62 -32.00 16 10 C 0.44 21.73 7.82 87.66 0.69 22.42 16 11 O -0.62 -35.82 15.78 -3.07 -0.05 -35.86 16 12 C 0.06 2.38 6.17 85.56 0.53 2.91 16 13 N -0.69 -23.44 6.13 -517.92 -3.17 -26.61 16 14 C 0.07 1.77 5.58 86.30 0.48 2.25 16 15 C -0.10 -2.35 5.18 30.60 0.16 -2.19 16 16 C 0.09 1.79 2.64 30.63 0.08 1.87 16 17 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 18 C -0.15 -2.30 5.42 30.68 0.17 -2.14 16 19 C -0.12 -1.49 6.03 30.71 0.19 -1.31 16 20 C -0.15 -1.96 6.14 30.68 0.19 -1.78 16 21 C 0.05 0.82 6.84 72.01 0.49 1.31 16 22 O -0.40 -8.94 9.94 -148.98 -1.48 -10.43 16 23 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.40 19.94 7.90 -92.71 -0.73 19.20 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.34 11.92 8.43 -89.70 -0.76 11.17 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.96 7.83 -2.39 -0.02 1.94 16 30 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -68.47 321.67 -0.22 -68.69 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.45 Total: 36.60 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.25 Total: 4.33 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -4.51 Total: -108.89 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -1.53 Total: -46.29 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -68.47 -0.22 -68.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224014838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.755 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds