Wall clock time and date at job start Mon Mar 30 2020 04:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99685 * 2 1 4 4 H 1.48500 * 109.47371 * 270.00196 * 3 2 1 5 5 H 1.48496 * 109.47438 * 30.00798 * 3 2 1 6 6 H 1.48508 * 109.47053 * 150.00672 * 3 2 1 7 7 C 1.37873 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99993 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00055 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00204 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47054 * 180.02562 * 13 11 10 15 15 C 1.46898 * 110.99673 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.09001 * 110.66586 * 51.76613 * 16 15 14 18 18 C 1.54889 * 110.75563 * 288.32932 * 16 15 14 19 19 C 1.54273 * 104.19302 * 203.74070 * 18 16 15 20 20 C 1.53876 * 106.59650 * 23.61106 * 19 18 16 21 21 H 1.09004 * 110.02869 * 240.71334 * 20 19 18 22 22 O 1.42900 * 110.03004 * 119.28609 * 20 19 18 23 23 C 1.54268 * 106.60002 * 359.97438 * 20 19 18 24 24 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46800 * 60.00351 * 9 7 2 26 26 H 1.08998 * 109.46887 * 300.00145 * 9 7 2 27 27 H 0.96999 * 119.99688 * 359.97438 * 10 9 7 28 28 H 1.08993 * 109.46849 * 60.00251 * 13 11 10 29 29 H 1.08995 * 109.46627 * 299.99586 * 13 11 10 30 30 H 1.00906 * 110.99345 * 303.95214 * 14 13 11 31 31 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 32 32 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 33 33 H 1.08994 * 110.48659 * 322.41901 * 18 16 15 34 34 H 1.09003 * 110.48808 * 85.06555 * 18 16 15 35 35 H 1.09000 * 110.02959 * 264.32578 * 19 18 16 36 36 H 1.08997 * 110.03067 * 142.89528 * 19 18 16 37 37 H 0.96696 * 114.00289 * 62.83255 * 22 20 19 38 38 H 1.09001 * 110.48410 * 217.71224 * 23 20 19 39 39 H 1.08997 * 110.59662 * 95.12743 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7540 -4.8834 -0.0015 12 8 0.5615 -5.1050 -0.0006 13 6 2.7333 -6.0288 -0.0022 14 7 1.9987 -7.3010 -0.0023 15 6 2.9232 -8.4426 -0.0023 16 6 2.1232 -9.7468 -0.0018 17 1 1.3838 -9.7448 -0.8027 18 6 1.4483 -9.9762 1.3733 19 6 1.2313 -11.5022 1.4383 20 6 2.2598 -12.1335 0.4836 21 1 1.7480 -12.6873 -0.3034 22 8 3.1307 -13.0041 1.2087 23 6 3.0656 -10.9691 -0.1286 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8897 27 1 3.1568 -3.4354 -0.0028 28 1 3.3604 -5.9711 0.8874 29 1 3.3592 -5.9710 -0.8926 30 1 1.3626 -7.3512 0.7794 31 1 3.5512 -8.4016 0.8877 32 1 3.5511 -8.4016 -0.8923 33 1 2.1049 -9.6496 2.1797 34 1 0.4935 -9.4527 1.4218 35 1 0.2203 -11.7496 1.1145 36 1 1.3964 -11.8599 2.4546 37 1 2.6828 -13.7572 1.6177 38 1 3.2911 -11.1704 -1.1758 39 1 3.9845 -10.8015 0.4332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227694297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:49 Heat of formation + Delta-G solvation = -108.717334 kcal Electronic energy + Delta-G solvation = -18431.540834 eV Core-core repulsion = 15372.923046 eV Total energy + Delta-G solvation = -3058.617788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36057 -38.72123 -36.38907 -34.53031 -34.02078 -32.30753 -30.03083 -28.68907 -27.52440 -25.65858 -23.42643 -22.20647 -20.69340 -20.36175 -19.60615 -17.52024 -17.13035 -16.41622 -15.97126 -15.61290 -15.16058 -15.05857 -14.45687 -14.23523 -13.85091 -13.48658 -13.25973 -13.09663 -12.53738 -12.42030 -12.20253 -11.94522 -11.86888 -11.45082 -11.25321 -10.97938 -10.93141 -10.87332 -10.77439 -10.68493 -10.31383 -10.22150 -9.39101 -9.02688 -8.72794 -8.36148 -7.85351 -6.16126 -4.23076 3.24433 3.30392 3.32767 3.40729 3.68756 4.01339 4.28107 4.30686 4.33678 4.56914 4.69600 5.01223 5.04386 5.16345 5.19844 5.28162 5.34916 5.37418 5.44949 5.49452 5.58585 5.61222 5.68641 5.76009 5.79376 5.85216 6.01368 6.21301 6.93428 7.32612 7.33135 7.41251 7.46681 7.53353 7.68350 7.98012 8.64968 8.79624 9.13455 9.43706 10.94103 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.070908 B = 0.002763 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.784391 B =10130.497938 C =10341.896945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.672 5.672 15 C 0.068 3.932 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.122 4.122 19 C -0.157 4.157 20 C 0.098 3.902 21 H 0.058 0.942 22 O -0.568 6.568 23 C -0.111 4.111 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.390 0.610 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.350 0.650 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.376 0.624 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -22.377 1.893 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.305 5.305 15 C -0.061 4.061 16 C -0.108 4.108 17 H 0.109 0.891 18 C -0.159 4.159 19 C -0.195 4.195 20 C 0.040 3.960 21 H 0.076 0.924 22 O -0.374 6.374 23 C -0.149 4.149 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.222 0.778 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.170 0.830 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.223 0.777 38 H 0.091 0.909 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.174 -21.944 1.016 22.819 hybrid contribution 0.750 0.695 1.084 1.491 sum 6.924 -21.249 2.101 22.447 Atomic orbital electron populations 1.69979 1.06108 1.27290 1.48926 1.24960 0.94924 0.99469 0.94729 0.86409 0.79592 0.82639 0.78226 1.20446 1.21010 1.19774 1.21233 0.93256 0.90486 1.53162 0.91915 1.19091 0.88309 0.81935 0.97704 1.46448 1.11079 1.06131 1.72738 1.20367 0.89552 0.84251 0.77824 1.90661 1.16695 1.84726 1.50150 1.21843 0.95691 0.89539 1.02237 1.60120 1.18957 0.99957 1.51422 1.21956 0.94087 0.89504 1.00597 1.22120 0.97502 0.92944 0.98268 0.89149 1.22410 1.01257 0.95127 0.97123 1.22892 0.99457 0.96897 1.00217 1.22504 0.90192 0.90791 0.92549 0.92420 1.86542 1.38379 1.40658 1.71828 1.22353 0.98967 0.92774 1.00844 0.92449 0.95535 0.95613 0.77788 0.92906 0.88593 0.83026 0.95183 0.90816 0.91578 0.90885 0.91296 0.91037 0.77748 0.90908 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 10 N -0.71 -15.10 5.55 -61.46 -0.34 -15.44 16 11 C 0.50 9.94 7.87 -10.99 -0.09 9.86 16 12 O -0.54 -13.24 16.20 5.55 0.09 -13.15 16 13 C 0.04 0.57 6.17 -4.97 -0.03 0.53 16 14 N -0.67 -9.25 6.13 -115.06 -0.70 -9.96 16 15 C 0.07 0.71 5.17 -3.82 -0.02 0.69 16 16 C -0.09 -0.84 3.11 -88.64 -0.28 -1.12 16 17 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -1.10 5.70 -25.07 -0.14 -1.25 16 19 C -0.16 -1.21 6.61 -25.61 -0.17 -1.38 16 20 C 0.10 0.78 4.26 -25.61 -0.11 0.67 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 O -0.57 -4.78 13.22 -35.23 -0.47 -5.24 16 23 C -0.11 -0.96 6.01 -25.09 -0.15 -1.11 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.35 5.02 7.82 -39.29 -0.31 4.71 16 31 H 0.03 0.30 7.99 -51.93 -0.41 -0.11 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.62 7.93 -51.93 -0.41 0.20 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 37 H 0.38 1.57 9.11 45.56 0.42 1.99 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.73 7.98 -51.93 -0.41 0.31 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -33.25 324.67 -7.89 -41.13 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.64 Total: 7.29 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.43 Total: 0.10 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.31 Total: -50.92 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.38 Total: -18.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.25 -7.89 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227694297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.585 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds