Wall clock time and date at job start Mon Mar 30 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47146 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00318 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47702 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47269 * 54.99942 * 15 14 13 17 17 C 1.53006 * 109.46947 * 295.00495 * 15 14 13 18 18 C 1.53007 * 109.47072 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46800 * 60.00044 * 18 17 15 20 20 C 1.53001 * 109.46993 * 299.99643 * 19 18 17 21 21 H 1.08992 * 109.47348 * 300.00030 * 20 19 18 22 22 O 1.42898 * 109.46903 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47089 * 60.00583 * 20 19 18 24 24 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 27 27 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 28 28 H 1.00908 * 110.99986 * 56.04852 * 13 12 10 29 29 H 1.09001 * 109.47623 * 300.00252 * 14 13 12 30 30 H 1.09007 * 109.46782 * 60.00161 * 14 13 12 31 31 H 1.09004 * 109.47193 * 299.99319 * 17 15 14 32 32 H 1.08999 * 109.47347 * 59.99621 * 17 15 14 33 33 H 1.08998 * 109.46786 * 300.00301 * 18 17 15 34 34 H 1.08995 * 109.47292 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.46956 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47241 * 60.00536 * 19 18 17 37 37 H 0.96703 * 113.99970 * 60.00385 * 22 20 19 38 38 H 1.08999 * 109.47347 * 179.97438 * 23 20 19 39 39 H 1.09006 * 109.47331 * 59.99662 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2708 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.2041 -8.2809 0.8467 17 6 3.3175 -8.3782 -1.3023 18 6 4.3428 -9.5139 -1.3010 19 6 3.6179 -10.8553 -1.1738 20 6 2.8236 -10.8838 0.1335 21 1 3.5044 -10.7576 0.9752 22 8 2.1470 -12.1368 0.2525 23 6 1.7983 -9.7482 0.1321 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0024 26 1 0.6175 -4.9205 0.8924 27 1 0.6169 -4.9209 -0.8876 28 1 2.8333 -5.9121 0.7841 29 1 0.8736 -7.3447 0.8941 30 1 0.8730 -7.3459 -0.8859 31 1 2.6365 -8.5042 -2.1441 32 1 3.8342 -7.4227 -1.3928 33 1 5.0237 -9.3876 -0.4592 34 1 4.9085 -9.4939 -2.2324 35 1 4.3484 -11.6643 -1.1724 36 1 2.9371 -10.9816 -2.0156 37 1 2.7368 -12.9031 0.2603 38 1 1.2320 -9.7688 1.0633 39 1 1.1173 -9.8745 -0.7096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227755336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:20 Heat of formation + Delta-G solvation = -113.455163 kcal Electronic energy + Delta-G solvation = -18839.624176 eV Core-core repulsion = 15780.800941 eV Total energy + Delta-G solvation = -3058.823235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.39147 -38.20882 -36.45112 -34.73402 -33.78672 -31.46656 -31.11505 -29.61487 -27.11406 -24.85679 -23.32013 -22.43822 -21.20944 -20.02104 -19.16720 -17.87809 -17.33001 -16.12286 -15.60329 -15.33859 -14.75966 -14.61925 -14.48639 -14.22907 -14.01915 -13.55021 -13.39535 -12.92000 -12.57484 -12.32665 -11.92734 -11.78464 -11.64847 -11.48874 -11.35559 -11.11423 -11.02036 -10.64252 -10.53486 -10.38380 -10.31160 -10.19848 -9.91866 -9.49297 -8.42623 -8.00558 -7.93400 -6.40167 -3.80931 3.18881 3.27323 3.33482 3.82939 3.93670 4.16772 4.46057 4.50242 4.58586 4.88358 4.94559 5.06284 5.17698 5.23116 5.27867 5.31843 5.37597 5.41999 5.63428 5.64804 5.76286 5.81893 5.86219 5.94045 6.00093 6.02478 6.05996 6.17552 6.29274 6.40855 6.48059 7.26719 7.39487 7.56679 7.71223 8.08296 8.63306 9.19587 9.56473 10.08035 10.77689 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.058756 B = 0.003171 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.428773 B = 8826.936353 C = 9141.810477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.064 3.936 15 C -0.080 4.080 16 H 0.071 0.929 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.105 3.895 21 H 0.053 0.947 22 O -0.571 6.571 23 C -0.106 4.106 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.348 0.652 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.375 0.625 38 H 0.067 0.933 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -19.996 -0.202 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.066 4.066 15 C -0.099 4.099 16 H 0.089 0.911 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.188 4.188 20 C 0.047 3.953 21 H 0.071 0.929 22 O -0.376 6.376 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.222 0.778 38 H 0.085 0.915 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.720 -19.408 -0.882 19.617 hybrid contribution -0.123 0.464 0.884 1.006 sum 2.598 -18.944 0.002 19.121 Atomic orbital electron populations 1.69615 1.05942 1.28130 1.50709 1.25265 0.95633 0.99719 0.97373 0.85858 0.79256 0.80820 0.78354 1.20443 1.19395 1.20927 1.19705 0.93366 0.82260 1.47522 0.87936 1.41870 1.09205 1.04618 1.64452 1.19831 0.88386 0.84740 0.84343 1.90515 1.13775 1.87094 1.55372 1.21668 0.94401 0.91003 1.01152 1.60063 1.18790 0.99886 1.51164 1.21983 0.95282 0.88887 1.00415 1.21067 0.96992 0.92697 0.99101 0.91103 1.21544 0.97529 0.99135 0.96584 1.21520 0.98151 0.94005 1.01976 1.22278 0.99446 0.98284 0.98819 1.21814 0.93524 0.83964 0.96023 0.92856 1.86516 1.38399 1.15904 1.96823 1.21490 0.97622 0.92396 1.02916 0.91890 0.77461 0.93974 0.89655 0.83304 0.95535 0.91035 0.92174 0.89757 0.91985 0.91761 0.92219 0.91232 0.77815 0.91462 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 10 C 0.44 10.55 7.82 -10.98 -0.09 10.47 16 11 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.79 5.58 -115.06 -0.64 -11.44 16 14 C 0.06 0.80 5.07 -3.83 -0.02 0.78 16 15 C -0.08 -0.87 2.33 -90.62 -0.21 -1.08 16 16 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.11 -1.24 5.09 -26.72 -0.14 -1.37 16 18 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 19 C -0.15 -1.26 5.54 -26.73 -0.15 -1.41 16 20 C 0.11 0.96 3.47 -26.73 -0.09 0.87 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 O -0.57 -5.36 13.32 -35.23 -0.47 -5.83 16 23 C -0.11 -1.08 4.86 -26.73 -0.13 -1.21 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.14 7.75 -51.93 -0.40 0.73 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.38 1.91 9.08 45.56 0.41 2.32 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.68 319.82 -7.46 -39.14 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.65 Total: 13.05 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.25 Total: -1.43 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.02 Total: -50.06 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.38 Total: -21.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.68 -7.46 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227755336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.311 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds