Wall clock time and date at job start Mon Mar 30 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99490 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99349 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00466 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99719 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47146 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00318 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47702 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47269 * 54.99942 * 15 14 13 17 17 C 1.53006 * 109.46947 * 295.00495 * 15 14 13 18 18 C 1.53007 * 109.47072 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46800 * 60.00044 * 18 17 15 20 20 C 1.53001 * 109.46993 * 299.99643 * 19 18 17 21 21 H 1.08992 * 109.47348 * 300.00030 * 20 19 18 22 22 O 1.42898 * 109.46903 * 180.02562 * 20 19 18 23 23 C 1.52997 * 109.47089 * 60.00583 * 20 19 18 24 24 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00087 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.46986 * 300.00334 * 12 10 9 27 27 H 1.09000 * 109.46827 * 60.00337 * 12 10 9 28 28 H 1.00908 * 110.99986 * 56.04852 * 13 12 10 29 29 H 1.09001 * 109.47623 * 300.00252 * 14 13 12 30 30 H 1.09007 * 109.46782 * 60.00161 * 14 13 12 31 31 H 1.09004 * 109.47193 * 299.99319 * 17 15 14 32 32 H 1.08999 * 109.47347 * 59.99621 * 17 15 14 33 33 H 1.08998 * 109.46786 * 300.00301 * 18 17 15 34 34 H 1.08995 * 109.47292 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.46956 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47241 * 60.00536 * 19 18 17 37 37 H 0.96703 * 113.99970 * 60.00385 * 22 20 19 38 38 H 1.08999 * 109.47347 * 179.97438 * 23 20 19 39 39 H 1.09006 * 109.47331 * 59.99662 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2438 -4.8630 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2708 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.2041 -8.2809 0.8467 17 6 3.3175 -8.3782 -1.3023 18 6 4.3428 -9.5139 -1.3010 19 6 3.6179 -10.8553 -1.1738 20 6 2.8236 -10.8838 0.1335 21 1 3.5044 -10.7576 0.9752 22 8 2.1470 -12.1368 0.2525 23 6 1.7983 -9.7482 0.1321 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 0.0024 26 1 0.6175 -4.9205 0.8924 27 1 0.6169 -4.9209 -0.8876 28 1 2.8333 -5.9121 0.7841 29 1 0.8736 -7.3447 0.8941 30 1 0.8730 -7.3459 -0.8859 31 1 2.6365 -8.5042 -2.1441 32 1 3.8342 -7.4227 -1.3928 33 1 5.0237 -9.3876 -0.4592 34 1 4.9085 -9.4939 -2.2324 35 1 4.3484 -11.6643 -1.1724 36 1 2.9371 -10.9816 -2.0156 37 1 2.7368 -12.9031 0.2603 38 1 1.2320 -9.7688 1.0633 39 1 1.1173 -9.8745 -0.7096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227755336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:20 Heat of formation + Delta-G solvation = -138.292612 kcal Electronic energy + Delta-G solvation = -18840.701209 eV Core-core repulsion = 15780.800941 eV Total energy + Delta-G solvation = -3059.900268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35361 -39.92982 -37.42544 -36.10519 -35.52125 -33.28383 -32.31719 -30.45451 -28.56243 -26.51053 -24.65621 -23.23491 -22.10587 -21.17229 -20.69471 -19.89737 -18.15770 -17.70837 -16.96302 -16.48742 -16.26117 -15.98327 -15.57947 -15.40629 -15.28140 -15.00708 -14.57920 -14.23850 -13.68406 -13.49303 -13.33337 -13.15389 -12.93012 -12.77084 -12.69823 -12.42047 -12.25948 -12.12067 -11.90841 -11.51757 -11.48934 -11.40327 -11.09091 -10.64617 -10.33830 -10.02098 -9.28921 -8.47069 -5.96001 1.37956 1.41618 1.54690 2.04871 2.28966 2.86536 3.20140 3.31260 3.60254 3.74042 3.80290 4.11425 4.15920 4.28354 4.32364 4.35362 4.48832 4.52141 4.57183 4.60774 4.66827 4.75013 4.79892 4.86554 5.07816 5.17587 5.22949 5.26464 5.36217 5.40520 5.52081 5.57352 5.89574 6.11194 6.42066 6.59734 6.91986 7.12058 7.55783 8.10980 8.70469 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.058756 B = 0.003171 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.428773 B = 8826.936353 C = 9141.810477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.065 3.935 13 N -0.678 5.678 14 C 0.066 3.934 15 C -0.072 4.072 16 H 0.070 0.930 17 C -0.109 4.109 18 C -0.116 4.116 19 C -0.144 4.144 20 C 0.106 3.894 21 H 0.060 0.940 22 O -0.587 6.587 23 C -0.103 4.103 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.343 0.657 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.066 0.934 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -20.931 -0.046 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.068 4.068 13 N -0.311 5.311 14 C -0.063 4.063 15 C -0.091 4.091 16 H 0.089 0.911 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.181 4.181 20 C 0.048 3.952 21 H 0.078 0.922 22 O -0.395 6.395 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.230 0.770 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.162 0.838 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.243 0.757 38 H 0.085 0.915 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.440 -20.378 -0.726 20.537 hybrid contribution -0.046 0.686 0.830 1.078 sum 2.394 -19.692 0.104 19.837 Atomic orbital electron populations 1.69676 1.06865 1.29325 1.50352 1.26060 0.96555 1.02461 0.96246 0.84919 0.77885 0.76798 0.78684 1.19554 1.19756 1.19515 1.19677 0.92718 0.84046 1.49956 0.90306 1.41942 1.09339 1.04742 1.65091 1.20877 0.88262 0.86154 0.82142 1.90484 1.15826 1.87966 1.56616 1.21531 0.94088 0.88229 1.02946 1.60066 1.18964 1.00804 1.51226 1.22055 0.95659 0.87494 1.01078 1.20979 0.96567 0.92678 0.98864 0.91124 1.21485 0.97808 0.98634 0.96691 1.21489 0.97718 0.93830 1.02343 1.22212 0.99556 0.98155 0.98201 1.21763 0.93146 0.83705 0.96592 0.92221 1.86468 1.39556 1.16639 1.96841 1.21428 0.97767 0.92254 1.02671 0.91276 0.76984 0.91717 0.87993 0.83835 0.94360 0.90677 0.92465 0.92443 0.91722 0.91371 0.90261 0.91822 0.75671 0.91501 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.33 -19.23 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.82 7.16 -2.92 -0.02 4.80 16 9 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 10 C 0.44 21.17 7.82 87.66 0.69 21.85 16 11 O -0.62 -34.91 15.78 -3.05 -0.05 -34.96 16 12 C 0.06 2.25 6.17 85.56 0.53 2.78 16 13 N -0.68 -21.55 5.58 -517.94 -2.89 -24.44 16 14 C 0.07 1.57 5.07 86.30 0.44 2.00 16 15 C -0.07 -1.49 2.33 -10.79 -0.03 -1.52 16 16 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 17 C -0.11 -2.37 5.09 30.60 0.16 -2.22 16 18 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 19 C -0.14 -2.11 5.54 30.60 0.17 -1.94 16 20 C 0.11 1.73 3.47 30.59 0.11 1.83 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 O -0.59 -9.70 13.32 -148.98 -1.98 -11.68 16 23 C -0.10 -1.92 4.86 30.59 0.15 -1.77 16 24 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.34 11.42 8.43 -89.69 -0.76 10.67 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.57 7.75 -2.39 -0.02 1.55 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.39 3.02 9.08 -74.05 -0.67 2.35 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -67.85 319.82 -1.67 -69.52 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -1.10 Total: 37.19 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 3.67 Total: 0.52 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.23 Total: -105.84 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -2.03 Total: -46.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.85 -1.67 -69.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227755336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.774 kcal (2) G-P(sol) polarization free energy of solvation -67.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds