Wall clock time and date at job start Mon Mar 30 2020 04:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 H 1.08999 * 109.50540 * 304.92620 * 3 2 1 5 5 C 1.53041 * 109.50120 * 65.00508 * 3 2 1 6 6 N 1.46845 * 109.52458 * 179.11928 * 5 3 2 7 7 C 1.46905 * 110.99854 * 174.15834 * 6 5 3 8 8 C 1.50700 * 109.46871 * 293.60429 * 7 6 5 9 9 O 1.21289 * 120.00583 * 353.73923 * 8 7 6 10 10 N 1.34781 * 119.99577 * 173.73330 * 8 7 6 11 11 C 1.37094 * 119.99939 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00065 * 359.97438 * 11 10 8 13 13 C 1.38946 * 119.99987 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00244 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00201 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47148 * 269.99976 * 15 13 11 17 17 H 1.48503 * 109.46961 * 29.99982 * 15 13 11 18 18 H 1.48501 * 109.47351 * 149.99715 * 15 13 11 19 19 C 1.46841 * 111.19949 * 298.25451 * 6 5 3 20 20 C 1.53041 * 109.52367 * 61.74071 * 19 6 5 21 21 C 1.53116 * 109.28031 * 300.82320 * 20 19 6 22 22 H 1.09000 * 109.57626 * 297.71924 * 21 20 19 23 23 O 1.42903 * 109.52703 * 177.55595 * 21 20 19 24 24 H 1.09004 * 109.47107 * 60.00062 * 1 2 3 25 25 H 1.09006 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46995 * 299.99265 * 1 2 3 27 27 H 1.09007 * 109.46802 * 240.00510 * 2 1 3 28 28 H 1.09001 * 109.47207 * 120.00704 * 2 1 3 29 29 H 1.08993 * 109.46455 * 59.10071 * 5 3 2 30 30 H 1.09010 * 109.45761 * 299.13415 * 5 3 2 31 31 H 1.08997 * 109.46619 * 173.60919 * 7 6 5 32 32 H 1.08995 * 109.47021 * 53.61083 * 7 6 5 33 33 H 0.97001 * 119.99970 * 359.97438 * 10 8 7 34 34 H 0.96998 * 120.00619 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.46682 * 181.75660 * 19 6 5 36 36 H 1.09004 * 109.46430 * 301.72828 * 19 6 5 37 37 H 1.08995 * 109.50763 * 180.88174 * 20 19 6 38 38 H 1.08999 * 109.50015 * 60.76439 * 20 19 6 39 39 H 0.96695 * 113.99291 * 60.31699 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9817 -0.8424 5 6 1.6356 2.1273 1.3075 6 7 2.1429 3.5053 1.3171 7 6 1.6568 4.2371 2.4945 8 6 0.1635 4.4133 2.3951 9 8 -0.4215 4.0750 1.3879 10 7 -0.5221 4.9469 3.4255 11 6 -1.8807 5.1068 3.3354 12 1 -2.4016 4.8056 2.4384 13 6 -2.5876 5.6564 4.3979 14 7 -3.8899 5.8102 4.3113 15 14 -1.6867 6.1781 5.9489 16 1 -1.6337 5.0372 6.8980 17 1 -0.3052 6.5976 5.6015 18 1 -2.4050 7.3142 6.5802 19 6 3.6095 3.5317 1.2497 20 6 4.0730 2.8887 -0.0595 21 6 3.5665 1.4451 -0.1209 22 1 3.9978 0.8715 0.6996 23 8 3.9478 0.8576 -1.3665 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0571 1.5793 2.1501 30 1 0.5487 2.1398 1.3898 31 1 2.1360 5.2151 2.5377 32 1 1.8971 3.6745 3.3966 33 1 -0.0544 5.2171 4.2312 34 1 -4.3833 6.1942 5.0528 35 1 3.9565 4.5641 1.2899 36 1 4.0219 2.9770 2.0926 37 1 5.1621 2.8943 -0.1022 38 1 3.6723 3.4511 -0.9029 39 1 4.9035 0.8263 -1.5102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229839492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:13 Heat of formation + Delta-G solvation = -116.615949 kcal Electronic energy + Delta-G solvation = -19890.745732 eV Core-core repulsion = 16831.785435 eV Total energy + Delta-G solvation = -3058.960297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96083 -39.75989 -37.23389 -35.92825 -35.45964 -33.74067 -32.65230 -30.06673 -28.76958 -26.24089 -25.18174 -23.68635 -21.93632 -21.24457 -20.79610 -20.18972 -18.27040 -17.70876 -16.96811 -16.65851 -16.54314 -15.65458 -15.46446 -15.41173 -14.90565 -14.80915 -14.69383 -14.30898 -14.09761 -13.83611 -13.56922 -13.05371 -12.97983 -12.89595 -12.48056 -12.40188 -12.38671 -12.25245 -11.97398 -11.76899 -11.50398 -11.42732 -11.05962 -10.68310 -10.35620 -10.21815 -9.17971 -8.40244 -6.00872 1.30147 1.35638 1.44607 1.97881 2.23597 2.62138 3.15996 3.18694 3.33490 3.69934 3.84507 4.01454 4.14387 4.21024 4.28506 4.34746 4.38231 4.40138 4.49623 4.55949 4.65962 4.69311 4.91228 4.93300 4.98723 5.02493 5.13016 5.15684 5.27538 5.40894 5.47110 5.54683 5.92154 6.05652 6.25270 6.61697 6.90265 6.98269 7.41689 7.99854 8.77669 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.031420 B = 0.005094 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.946027 B = 5494.850323 C = 6078.304076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.074 4.074 4 H 0.050 0.950 5 C 0.065 3.935 6 N -0.544 5.544 7 C 0.055 3.945 8 C 0.450 3.550 9 O -0.604 6.604 10 N -0.593 5.593 11 C -0.326 4.326 12 H 0.054 0.946 13 C -0.016 4.016 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.257 1.257 17 H -0.231 1.231 18 H -0.276 1.276 19 C 0.056 3.944 20 C -0.142 4.142 21 C 0.115 3.885 22 H 0.069 0.931 23 O -0.579 6.579 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.389 0.611 34 H 0.279 0.721 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.945 -7.787 -1.211 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.063 4.063 6 N -0.269 5.269 7 C -0.076 4.076 8 C 0.237 3.763 9 O -0.487 6.487 10 N -0.236 5.236 11 C -0.455 4.455 12 H 0.072 0.928 13 C -0.214 4.214 14 N -0.577 5.577 15 Si 0.785 3.215 16 H -0.182 1.182 17 H -0.154 1.154 18 H -0.201 1.201 19 C -0.071 4.071 20 C -0.180 4.180 21 C 0.056 3.944 22 H 0.087 0.913 23 O -0.387 6.387 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 20.551 -7.766 -2.294 22.089 hybrid contribution 0.128 0.290 1.431 1.465 sum 20.679 -7.477 -0.864 22.007 Atomic orbital electron populations 1.21799 0.96727 1.01635 1.00884 1.21412 0.94980 0.95188 1.02649 1.21097 0.94898 0.96239 0.97044 0.93115 1.22122 1.00553 0.87296 0.96294 1.61409 1.10398 1.14879 1.40210 1.21822 0.90734 1.01725 0.93326 1.20949 0.90574 0.81373 0.83382 1.90544 1.71837 1.54058 1.32296 1.42051 1.06824 1.58044 1.16658 1.18985 0.82634 1.40797 1.03109 0.92832 1.26106 0.96288 0.96657 1.02326 1.69808 1.08420 1.45201 1.34319 0.85370 0.79776 0.79074 0.77324 1.18170 1.15378 1.20070 1.22177 0.85145 1.02262 0.97479 1.22282 1.01933 0.95952 0.97814 1.21789 0.93583 0.92757 0.86257 0.91333 1.86502 1.29973 1.83421 1.38835 0.94115 0.91282 0.94409 0.90781 0.91066 0.94076 0.92070 0.86034 0.90377 0.77560 0.91199 0.89027 0.92942 0.87872 0.92378 0.75651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.67 71.98 0.70 -3.78 16 2 C -0.10 -2.68 5.34 30.59 0.16 -2.52 16 3 C -0.07 -2.10 2.08 -10.74 -0.02 -2.12 16 4 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 5 C 0.07 2.07 4.13 86.33 0.36 2.43 16 6 N -0.54 -16.72 4.35 -900.93 -3.92 -20.63 16 7 C 0.05 1.71 5.45 85.56 0.47 2.18 16 8 C 0.45 20.63 7.31 87.66 0.64 21.27 16 9 O -0.60 -34.07 14.29 -3.06 -0.04 -34.12 16 10 N -0.59 -28.28 5.09 -306.98 -1.56 -29.85 16 11 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 12 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 13 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 14 N -0.94 -57.09 13.96 21.66 0.30 -56.78 16 15 Si 0.96 38.95 27.74 68.60 1.90 40.85 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 18 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 19 C 0.06 1.16 5.46 86.33 0.47 1.63 16 20 C -0.14 -2.65 5.72 30.65 0.18 -2.47 16 21 C 0.11 2.37 2.95 30.68 0.09 2.46 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 O -0.58 -11.41 12.68 -148.98 -1.89 -13.30 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.04 1.26 6.59 -2.39 -0.02 1.25 16 27 H 0.07 1.83 7.63 -2.38 -0.02 1.81 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 2.52 4.52 -2.38 -0.01 2.51 16 31 H 0.12 3.09 7.98 -2.39 -0.02 3.07 16 32 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 33 H 0.39 15.27 5.76 -92.71 -0.53 14.73 16 34 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.09 1.62 8.01 -2.39 -0.02 1.60 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.39 3.76 9.09 -74.06 -0.67 3.09 16 Total: -1.00 -78.71 309.26 -1.06 -79.77 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.21 Total: 33.84 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.36 Total: 0.22 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.18 Total: -107.26 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.93 Total: -47.42 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.90 Total: 40.85 kcal Total: -78.71 -1.06 -79.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229839492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.844 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds