Wall clock time and date at job start Mon Mar 30 2020 04:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.54386 * 2 1 4 4 C 1.46898 * 111.00491 * 300.18093 * 3 2 1 5 5 C 1.50698 * 109.47504 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99612 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00358 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00640 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.47491 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99941 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99939 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00079 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47113 * 59.99572 * 13 11 9 15 15 H 1.48496 * 109.46838 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.46987 * 299.99520 * 13 11 9 17 17 C 1.53177 * 109.60363 * 239.78808 * 2 1 3 18 18 C 1.53092 * 109.16443 * 297.05013 * 17 2 1 19 19 O 1.42905 * 109.42428 * 302.41109 * 18 17 2 20 20 C 1.42901 * 114.09770 * 61.14988 * 19 18 17 21 21 C 1.53095 * 109.41489 * 298.84274 * 20 19 18 22 22 H 1.09009 * 109.47221 * 299.82113 * 1 2 3 23 23 H 1.09001 * 109.47666 * 59.81607 * 1 2 3 24 24 H 1.08992 * 109.47562 * 179.82080 * 1 2 3 25 25 H 1.00908 * 110.99570 * 64.13620 * 3 2 1 26 26 H 1.09001 * 109.46994 * 300.00264 * 4 3 2 27 27 H 1.09000 * 109.46868 * 59.99621 * 4 3 2 28 28 H 0.97004 * 119.99766 * 0.02562 * 7 5 4 29 29 H 1.09002 * 109.46783 * 300.00576 * 8 7 5 30 30 H 1.09000 * 109.46632 * 59.99591 * 8 7 5 31 31 H 0.96995 * 120.00004 * 180.02562 * 12 11 9 32 32 H 1.09004 * 109.51365 * 177.15329 * 17 2 1 33 33 H 1.08998 * 109.53811 * 56.96774 * 17 2 1 34 34 H 1.09002 * 109.48343 * 182.42096 * 18 17 2 35 35 H 1.08999 * 109.47546 * 62.39689 * 18 17 2 36 36 H 1.09002 * 109.48282 * 58.82206 * 20 19 18 37 37 H 1.08997 * 109.48587 * 178.84728 * 20 19 18 38 38 H 1.09001 * 109.52141 * 177.51212 * 21 20 19 39 39 H 1.09000 * 109.52256 * 297.64026 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0214 1.3844 0.0000 4 6 1.5478 2.1112 -1.1855 5 6 2.0703 3.5243 -1.1504 6 8 2.7681 3.8900 -0.2283 7 7 1.7614 4.3819 -2.1430 8 6 2.2697 5.7554 -2.1092 9 6 1.7838 6.5010 -3.3253 10 1 1.1591 6.0016 -4.0511 11 6 2.1376 7.8206 -3.5119 12 7 2.8987 8.4286 -2.6284 13 14 1.5346 8.7450 -5.0190 14 1 0.0498 8.7674 -5.0248 15 1 2.0501 10.1372 -4.9847 16 1 2.0243 8.0655 -6.2452 17 6 2.0439 -0.7261 -1.2470 18 6 1.5930 -2.1883 -1.1987 19 8 2.0771 -2.7956 0.0009 20 6 1.5913 -2.1879 1.1996 21 6 2.0424 -0.7257 1.2478 22 1 -0.3634 0.5111 0.8917 23 1 -0.3634 0.5167 -0.8883 24 1 -0.3634 -1.0276 -0.0032 25 1 1.7550 1.8626 0.8477 26 1 1.9079 1.6125 -2.0853 27 1 0.4579 2.1272 -1.1905 28 1 1.2023 4.0896 -2.8799 29 1 1.9100 6.2539 -1.2091 30 1 3.3596 5.7394 -2.1047 31 1 3.1473 9.3569 -2.7595 32 1 3.1327 -0.6814 -1.2715 33 1 1.6387 -0.2492 -2.1394 34 1 1.9921 -2.7205 -2.0622 35 1 0.5041 -2.2336 -1.2152 36 1 0.5023 -2.2329 1.2145 37 1 1.9890 -2.7198 2.0638 38 1 1.6360 -0.2483 2.1394 39 1 3.1312 -0.6811 1.2748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229899708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:13 Heat of formation + Delta-G solvation = -116.118880 kcal Electronic energy + Delta-G solvation = -19293.073065 eV Core-core repulsion = 16234.134322 eV Total energy + Delta-G solvation = -3058.938743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19219 -40.25009 -37.42962 -36.10768 -34.35470 -32.99827 -32.06569 -29.77559 -28.64509 -27.37847 -24.81019 -24.56655 -23.61273 -21.37953 -19.65999 -19.09658 -17.90214 -17.28934 -16.96201 -16.85454 -16.66314 -16.30335 -15.83747 -15.63376 -15.40362 -14.92934 -14.67928 -14.19334 -14.10750 -13.79771 -13.54542 -13.21956 -13.01509 -12.93399 -12.69797 -12.55139 -12.35004 -12.24297 -12.17688 -11.52073 -11.32176 -11.22044 -10.79726 -10.74362 -10.49511 -9.83834 -9.37179 -8.29493 -6.46597 1.42896 1.47146 1.55386 1.77467 2.27865 2.47978 2.99679 3.05221 3.21858 3.62466 3.86910 3.97374 4.06289 4.07743 4.28342 4.30795 4.38791 4.40624 4.55116 4.65408 4.71964 4.81302 4.84481 4.94716 5.04596 5.10317 5.16969 5.22208 5.23380 5.41446 5.47993 5.68169 5.84185 6.00721 6.29111 6.33410 6.64559 6.93179 7.23073 7.51091 8.82591 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.050712 B = 0.003487 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.007579 B = 8026.937767 C = 8285.832063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.111 3.889 3 N -0.679 5.679 4 C 0.054 3.946 5 C 0.491 3.509 6 O -0.593 6.593 7 N -0.709 5.709 8 C 0.267 3.733 9 C -0.557 4.557 10 H 0.085 0.915 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.986 3.014 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.262 1.262 17 C -0.145 4.145 18 C 0.061 3.939 19 O -0.403 6.403 20 C 0.063 3.937 21 C -0.142 4.142 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.345 0.655 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.408 0.592 29 H -0.013 1.013 30 H -0.016 1.016 31 H 0.269 0.731 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -21.980 2.020 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.021 3.979 3 N -0.311 5.311 4 C -0.078 4.078 5 C 0.279 3.721 6 O -0.474 6.474 7 N -0.359 5.359 8 C 0.144 3.856 9 C -0.595 4.595 10 H 0.103 0.897 11 C -0.197 4.197 12 N -0.570 5.570 13 Si 0.809 3.191 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.186 1.186 17 C -0.183 4.183 18 C -0.015 4.015 19 O -0.322 6.322 20 C -0.014 4.014 21 C -0.180 4.180 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.164 0.836 26 H 0.136 0.864 27 H 0.105 0.895 28 H 0.244 0.756 29 H 0.005 0.995 30 H 0.002 0.998 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.308 -21.851 2.432 23.169 hybrid contribution -0.984 1.416 -0.382 1.766 sum -8.291 -20.436 2.050 22.149 Atomic orbital electron populations 1.22655 0.95401 1.03639 1.02741 1.21034 0.93241 0.87324 0.96311 1.60292 1.64071 1.02341 1.04359 1.21813 0.99757 0.89055 0.97165 1.21473 0.80295 0.88679 0.81695 1.90641 1.40310 1.79612 1.36868 1.46172 1.52176 1.12547 1.25025 1.18512 0.92587 0.78346 0.96145 1.21603 1.33236 0.97245 1.07432 0.89686 1.26096 0.94647 0.98518 1.00426 1.70137 1.36716 1.12695 1.37498 0.85192 0.79011 0.76817 0.78107 1.18540 1.21171 1.18610 1.22301 1.01736 0.96563 0.97714 1.22742 0.99268 0.91921 0.87618 1.87909 1.72523 1.57108 1.14696 1.22713 0.99203 0.91773 0.87697 1.22198 1.01778 0.96580 0.97424 0.92220 0.91484 0.90238 0.83582 0.86398 0.89549 0.75590 0.99549 0.99771 0.92243 0.92149 0.89696 0.87740 0.91339 0.91412 0.87713 0.90144 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 7.69 71.98 0.55 -2.16 16 2 C 0.11 2.11 0.71 3.64 0.00 2.12 16 3 N -0.68 -17.85 5.72 -473.58 -2.71 -20.55 16 4 C 0.05 1.41 5.39 85.56 0.46 1.88 16 5 C 0.49 19.65 7.87 87.66 0.69 20.34 16 6 O -0.59 -29.91 16.20 -3.04 -0.05 -29.96 16 7 N -0.71 -29.80 5.55 -466.80 -2.59 -32.39 16 8 C 0.27 14.80 5.43 85.63 0.46 15.27 16 9 C -0.56 -30.35 9.28 25.60 0.24 -30.11 16 10 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 11 C 0.00 0.15 5.46 84.66 0.46 0.61 16 12 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 13 Si 0.99 42.17 29.54 68.60 2.03 44.19 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 C -0.15 -2.61 4.60 30.68 0.14 -2.47 16 18 C 0.06 0.91 6.57 72.01 0.47 1.39 16 19 O -0.40 -7.67 10.77 -148.98 -1.60 -9.27 16 20 C 0.06 0.94 6.57 72.01 0.47 1.41 16 21 C -0.14 -2.57 5.18 30.68 0.16 -2.41 16 22 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.07 0.94 6.40 -2.39 -0.02 0.92 16 24 H 0.08 0.92 5.02 -2.39 -0.01 0.91 16 25 H 0.34 9.73 8.43 -89.69 -0.76 8.97 16 26 H 0.12 2.65 6.39 -2.39 -0.02 2.64 16 27 H 0.09 1.80 6.30 -2.39 -0.02 1.79 16 28 H 0.41 13.89 8.32 -92.70 -0.77 13.12 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.08 1.32 6.60 -2.39 -0.02 1.31 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.79 6.60 -2.39 -0.02 0.77 16 36 H 0.07 0.79 6.61 -2.39 -0.02 0.78 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.21 308.83 -0.98 -74.19 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.46 Total: 24.27 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 4.12 Total: 5.85 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -5.01 Total: -109.28 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.65 Total: -39.22 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.21 -0.98 -74.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229899708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.932 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds