Wall clock time and date at job start Mon Mar 30 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08999 * 110.33357 * 305.70362 * 3 2 1 5 5 O 1.44430 * 110.37137 * 67.95061 * 3 2 1 6 6 C 1.44521 * 105.22381 * 159.24762 * 5 3 2 7 7 C 1.54475 * 104.88051 * 319.64233 * 6 5 3 8 8 C 1.54474 * 110.37018 * 183.44716 * 3 2 1 9 9 H 1.09006 * 110.51234 * 98.41604 * 8 3 2 10 10 C 1.53003 * 110.51472 * 335.83636 * 8 3 2 11 11 N 1.46902 * 109.47214 * 174.99859 * 10 8 3 12 12 C 1.46898 * 110.99792 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46821 * 179.97438 * 12 11 10 14 14 O 1.21294 * 120.00150 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99898 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99879 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00089 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99785 * 180.02562 * 16 15 13 19 19 N 1.31421 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99873 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47546 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.46996 * 120.00203 * 20 18 16 23 23 H 1.48498 * 109.47233 * 239.99508 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09007 * 110.39613 * 200.75432 * 6 5 3 30 30 H 1.09003 * 110.36923 * 78.51570 * 6 5 3 31 31 H 1.09000 * 110.51438 * 265.26167 * 7 6 5 32 32 H 1.09002 * 110.63100 * 142.60959 * 7 6 5 33 33 H 1.09000 * 109.46644 * 294.99867 * 10 8 3 34 34 H 1.09002 * 109.46661 * 54.99887 * 10 8 3 35 35 H 1.00906 * 110.99506 * 56.04548 * 11 10 8 36 36 H 1.08991 * 109.47193 * 300.00256 * 12 11 10 37 37 H 1.09003 * 109.46974 * 60.00005 * 12 11 10 38 38 H 0.97005 * 119.99823 * 0.02562 * 15 13 12 39 39 H 0.96995 * 119.99877 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6040 1.9984 -0.8300 5 8 1.7284 2.0859 1.2549 6 6 2.6465 3.1981 1.3494 7 6 3.9903 2.6492 0.8211 8 6 3.5821 1.4676 -0.0871 9 1 3.9039 1.6434 -1.1136 10 6 4.1704 0.1575 0.4409 11 7 5.6253 0.1570 0.2377 12 6 6.2257 -1.0883 0.7344 13 6 7.7154 -1.0525 0.5087 14 8 8.2265 -0.0847 -0.0140 15 7 8.4797 -2.0956 0.8887 16 6 9.8349 -2.0628 0.6839 17 1 10.2900 -1.2011 0.2185 18 6 10.6228 -3.1384 1.0752 19 7 10.0690 -4.1868 1.6420 20 14 12.4693 -3.0936 0.7968 21 1 12.8410 -1.8112 0.1468 22 1 13.1695 -3.2091 2.1013 23 1 12.8655 -4.2252 -0.0794 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.7490 3.5190 2.3861 30 1 2.3045 4.0262 0.7286 31 1 4.6111 2.2999 1.6461 32 1 4.5160 3.4103 0.2445 33 1 3.9520 0.0639 1.5047 34 1 3.7282 -0.6817 -0.0961 35 1 6.0513 0.9620 0.6721 36 1 6.0216 -1.1901 1.8002 37 1 5.7978 -1.9364 0.1999 38 1 8.0709 -2.8694 1.3071 39 1 10.6189 -4.9378 1.9148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234220967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:08 Heat of formation + Delta-G solvation = -94.753772 kcal Electronic energy + Delta-G solvation = -19053.706683 eV Core-core repulsion = 15995.694401 eV Total energy + Delta-G solvation = -3058.012282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.02118 -38.21700 -35.63733 -33.95538 -33.70927 -32.04419 -31.17536 -28.89504 -27.02052 -24.76468 -23.70034 -23.09816 -21.62528 -19.78981 -19.15408 -17.87400 -16.85704 -16.13473 -15.77181 -15.54175 -15.44889 -14.50839 -14.41047 -13.95700 -13.72182 -13.63716 -13.32517 -13.10103 -12.81424 -12.42229 -12.06459 -11.68934 -11.64889 -11.53159 -11.47385 -11.07489 -10.97249 -10.87469 -10.72812 -10.52842 -10.33856 -10.21780 -9.84541 -9.51267 -8.44441 -8.03400 -7.94708 -6.41067 -3.81824 3.16826 3.27283 3.34687 3.74383 3.92102 4.10147 4.30980 4.44222 4.54275 4.87924 4.92234 4.98743 5.08620 5.15119 5.16919 5.26721 5.35492 5.42113 5.54646 5.59805 5.67535 5.67797 5.77371 5.81673 5.88659 5.98031 5.99527 6.01175 6.07839 6.14863 6.28633 6.74117 7.24697 7.56097 7.68753 8.07512 8.62251 9.18738 9.55373 10.06857 10.76817 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042405 B = 0.003506 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.136536 B = 7983.266824 C = 8395.634210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.081 3.919 4 H 0.069 0.931 5 O -0.372 6.372 6 C 0.045 3.955 7 C -0.153 4.153 8 C -0.116 4.116 9 H 0.094 0.906 10 C 0.066 3.934 11 N -0.669 5.669 12 C 0.050 3.950 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.347 0.653 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 8.360 -0.647 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.022 3.978 4 H 0.087 0.913 5 O -0.291 6.291 6 C -0.032 4.032 7 C -0.190 4.190 8 C -0.135 4.135 9 H 0.113 0.887 10 C -0.063 4.063 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.737 8.547 -1.422 18.847 hybrid contribution 0.844 -0.369 1.000 1.359 sum -15.893 8.178 -0.422 17.879 Atomic orbital electron populations 1.21743 0.95510 1.01514 1.02000 1.21697 0.96363 0.94704 1.03158 1.23052 0.93423 0.94272 0.87012 0.91339 1.89139 1.57480 1.43495 1.38996 1.23391 0.88405 0.89688 1.01688 1.23028 0.97928 0.98178 0.99901 1.22573 0.94579 0.95156 1.01165 0.88724 1.22107 0.88730 0.97059 0.98453 1.60128 1.02242 1.04433 1.63411 1.21667 0.94856 0.93656 0.98056 1.19828 0.87621 0.85042 0.84865 1.90517 1.74245 1.34358 1.47651 1.41874 1.07615 1.16968 1.53640 1.19759 0.81906 1.03873 1.37298 0.87875 1.25269 1.00710 0.95116 0.96908 1.69625 1.36662 1.06839 1.41216 0.85796 0.82126 0.78442 0.77959 1.19216 1.20777 1.20739 0.93004 0.92750 0.92219 0.90696 0.90292 0.89329 0.92476 0.90714 0.90161 0.95177 0.90452 0.83343 0.93952 0.89614 0.77455 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.84 37.16 0.37 -0.93 16 2 C -0.12 -1.16 4.33 -26.73 -0.12 -1.27 16 3 C 0.08 0.83 3.17 -25.96 -0.08 0.74 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 O -0.37 -4.34 11.07 -35.23 -0.39 -4.73 16 6 C 0.05 0.43 7.63 37.93 0.29 0.72 16 7 C -0.15 -1.59 6.26 -25.16 -0.16 -1.75 16 8 C -0.12 -1.29 3.26 -89.05 -0.29 -1.58 16 9 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.07 0.84 3.79 -3.82 -0.01 0.83 16 11 N -0.67 -11.06 6.13 -115.05 -0.70 -11.76 16 12 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 13 C 0.44 10.59 7.82 -10.98 -0.09 10.51 16 14 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 15 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 19 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 20 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 27 H 0.07 0.76 7.01 -51.93 -0.36 0.40 16 28 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.84 7.22 -51.93 -0.38 0.46 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.39 7.96 -51.93 -0.41 -0.02 16 34 H 0.08 0.94 6.29 -51.93 -0.33 0.61 16 35 H 0.35 5.92 7.45 -39.29 -0.29 5.63 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -31.29 317.69 -7.15 -38.44 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.21 Total: 11.57 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -0.36 Total: 0.07 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.04 Total: -50.31 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.30 Total: -20.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.29 -7.15 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234220967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.311 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds