Wall clock time and date at job start Mon Mar 30 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47670 * 2 1 4 4 H 1.09001 * 109.47518 * 305.00556 * 3 2 1 5 5 C 1.50699 * 109.47475 * 184.99802 * 3 2 1 6 6 H 1.08002 * 120.00516 * 239.99694 * 5 3 2 7 7 C 1.37884 * 119.99783 * 59.99994 * 5 3 2 8 8 N 1.31514 * 119.99707 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99956 * 180.27458 * 7 5 3 10 10 H 1.48497 * 109.47172 * 179.72730 * 9 7 5 11 11 H 1.48506 * 109.47132 * 299.72429 * 9 7 5 12 12 H 1.48501 * 109.47173 * 59.72550 * 9 7 5 13 13 N 1.46506 * 109.47037 * 64.99925 * 3 2 1 14 14 C 1.34774 * 120.00001 * 275.00088 * 13 3 2 15 15 O 1.21280 * 120.00278 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99877 * 179.97438 * 14 13 3 17 17 H 1.08999 * 110.45678 * 59.30250 * 16 14 13 18 18 C 1.54475 * 110.51465 * 296.69512 * 16 14 13 19 19 O 1.44787 * 104.63119 * 265.30144 * 18 16 14 20 20 C 1.44430 * 105.29308 * 319.46230 * 19 18 16 21 21 C 1.54480 * 104.80079 * 40.54553 * 20 19 18 22 22 H 1.09001 * 110.50694 * 94.67134 * 21 20 19 23 23 N 1.46908 * 110.50887 * 217.37612 * 21 20 19 24 24 C 1.46901 * 110.99925 * 269.64362 * 23 21 20 25 25 H 1.08997 * 109.47695 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46793 * 300.00192 * 1 2 3 27 27 H 1.08998 * 109.47381 * 59.99516 * 1 2 3 28 28 H 1.08996 * 109.47211 * 239.99803 * 2 1 3 29 29 H 1.09004 * 109.47111 * 119.99830 * 2 1 3 30 30 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 31 31 H 0.96997 * 119.99890 * 95.00058 * 13 3 2 32 32 H 1.09004 * 110.37283 * 24.16618 * 18 16 14 33 33 H 1.09001 * 110.37556 * 146.50187 * 18 16 14 34 34 H 1.09000 * 110.36907 * 281.71361 * 20 19 18 35 35 H 1.09000 * 110.37275 * 159.37775 * 20 19 18 36 36 H 1.00897 * 110.99888 * 33.60036 * 23 21 20 37 37 H 1.08996 * 109.46806 * 179.97438 * 24 23 21 38 38 H 1.09000 * 109.47057 * 300.00002 * 24 23 21 39 39 H 1.08999 * 109.46705 * 60.00213 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0052 0.8735 -1.3778 10 1 6.3983 0.2048 -2.6441 11 1 6.5052 2.2719 -1.3806 12 1 6.5926 0.1401 -0.2278 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6644 1.3670 15 8 -0.3395 2.6320 0.4345 16 6 0.0364 3.3377 2.6549 17 1 0.7255 4.1488 2.8900 18 6 -0.0080 2.3132 3.8102 19 8 -1.3927 1.8954 3.8755 20 6 -2.1639 3.0996 3.6726 21 6 -1.4121 3.8674 2.5628 22 1 -1.8398 3.6423 1.5858 23 7 -1.4489 5.3131 2.8216 24 6 -2.6209 5.9316 2.1878 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0606 -2.9503 31 1 2.2720 2.1230 1.9978 32 1 0.6369 1.4629 3.5883 33 1 0.2920 2.7838 4.7465 34 1 -2.1941 3.6896 4.5886 35 1 -3.1740 2.8528 3.3458 36 1 -1.4308 5.5036 3.8123 37 1 -2.6239 7.0016 2.3955 38 1 -2.5789 5.7703 1.1106 39 1 -3.5298 5.4818 2.5874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251382228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:39 Heat of formation + Delta-G solvation = -84.003890 kcal Electronic energy + Delta-G solvation = -20203.560948 eV Core-core repulsion = 17146.014816 eV Total energy + Delta-G solvation = -3057.546132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22886 -38.14798 -35.56340 -34.94631 -32.46989 -31.50445 -30.36562 -28.60323 -26.84232 -24.81878 -23.68300 -22.90179 -21.43688 -19.86858 -19.20994 -17.41506 -16.67159 -16.24552 -15.64916 -15.49229 -15.02713 -14.51537 -14.37373 -13.97226 -13.75464 -13.50530 -12.85541 -12.65573 -12.36289 -12.20186 -11.82812 -11.57460 -11.50130 -11.20415 -11.03813 -10.97362 -10.91158 -10.78590 -10.31395 -10.14476 -9.96481 -9.57287 -9.03278 -8.88869 -8.56089 -8.46662 -7.79291 -6.10074 -4.19526 3.26826 3.32233 3.33079 3.37017 3.79705 4.00032 4.32119 4.44813 4.55241 4.82113 5.01485 5.11671 5.20369 5.24064 5.34320 5.35442 5.56586 5.69535 5.75556 5.81780 5.88587 5.98510 6.44433 6.51920 6.60004 6.71792 6.90876 7.09858 7.22132 7.24123 7.40998 7.49703 7.64641 7.76343 7.93308 8.21231 8.69794 8.80086 9.16692 9.47833 10.95190 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.005326 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.678220 B = 5255.579526 C = 5418.009498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.545 6.545 16 C -0.141 4.141 17 H 0.115 0.885 18 C 0.053 3.947 19 O -0.367 6.367 20 C 0.021 3.979 21 C 0.063 3.937 22 H 0.119 0.881 23 N -0.681 5.681 24 C 0.028 3.972 25 H 0.021 0.979 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.338 0.662 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 6.758 12.042 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.300 3.700 15 O -0.424 6.424 16 C -0.164 4.164 17 H 0.133 0.867 18 C -0.024 4.024 19 O -0.285 6.285 20 C -0.058 4.058 21 C -0.048 4.048 22 H 0.137 0.863 23 N -0.312 5.312 24 C -0.121 4.121 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.126 6.554 10.661 14.921 hybrid contribution 0.716 -0.085 0.847 1.113 sum -7.409 6.469 11.508 15.138 Atomic orbital electron populations 1.21838 0.98293 0.98040 1.01309 1.21924 0.92652 0.99793 1.02197 1.18776 0.94124 0.89167 0.80994 0.93364 1.21200 0.90745 1.39066 1.06275 0.92169 1.24883 0.98550 0.94814 0.95394 1.69890 1.35198 1.37563 1.09317 0.86522 0.84933 0.78278 0.77433 1.21158 1.20214 1.20175 1.46445 1.14478 1.56010 1.18526 1.19873 0.82740 0.78973 0.88421 1.90625 1.51391 1.59860 1.40496 1.22693 0.98865 0.99290 0.95529 0.86661 1.23523 0.84522 0.98045 0.96319 1.89227 1.16708 1.29080 1.93459 1.24183 0.96927 0.87518 0.97210 1.23043 0.93965 0.86540 1.01229 0.86317 1.60373 1.42760 1.10571 1.17462 1.22233 0.90304 0.99033 1.00571 0.95943 0.94005 0.93299 0.88375 0.95091 0.92533 0.78092 0.88239 0.91491 0.92583 0.89150 0.84386 0.91433 0.91115 0.96013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.15 0.32 -2.83 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.48 4.76 -54.93 -0.26 -14.74 16 14 C 0.52 10.12 5.67 -10.99 -0.06 10.06 16 15 O -0.54 -12.63 12.42 5.56 0.07 -12.56 16 16 C -0.14 -2.06 3.29 -90.21 -0.30 -2.36 16 17 H 0.12 1.52 7.97 -51.93 -0.41 1.11 16 18 C 0.05 0.69 7.19 37.93 0.27 0.97 16 19 O -0.37 -5.47 11.66 -35.23 -0.41 -5.88 16 20 C 0.02 0.25 7.31 37.93 0.28 0.52 16 21 C 0.06 0.86 3.03 -66.14 -0.20 0.66 16 22 H 0.12 1.98 6.19 -51.93 -0.32 1.66 16 23 N -0.68 -7.71 6.60 -112.33 -0.74 -8.45 16 24 C 0.03 0.28 10.56 60.07 0.63 0.91 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.94 5.64 -51.93 -0.29 0.65 16 27 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 6.85 8.47 -40.82 -0.35 6.50 16 32 H 0.10 1.36 7.59 -51.93 -0.39 0.96 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.54 7.55 -51.93 -0.39 0.15 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.34 3.03 8.17 -39.29 -0.32 2.71 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.80 8.08 -51.93 -0.42 0.39 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -30.57 310.80 -6.90 -37.47 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.09 Total: 9.41 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 0.25 Total: -1.34 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.38 Total: -47.36 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.34 Total: -18.44 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.57 -6.90 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251382228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.537 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds