Wall clock time and date at job start Mon Mar 30 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.47029 * 125.64644 * 0.02753 * 8 6 5 10 10 C 1.54324 * 107.26772 * 181.02089 * 9 8 6 11 11 H 1.09008 * 110.71746 * 263.65026 * 10 9 8 12 12 N 1.46895 * 110.72144 * 140.55623 * 10 9 8 13 13 C 1.55153 * 102.94474 * 22.19070 * 10 9 8 14 14 H 1.08996 * 111.00417 * 82.57103 * 13 10 9 15 15 C 1.50703 * 111.00673 * 206.38713 * 13 10 9 16 16 H 1.08000 * 119.99858 * 359.97438 * 15 13 10 17 17 C 1.37875 * 120.00089 * 180.02562 * 15 13 10 18 18 N 1.31517 * 120.00025 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00025 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46869 * 89.99726 * 19 17 15 21 21 H 1.48498 * 109.47240 * 209.99816 * 19 17 15 22 22 H 1.48500 * 109.47105 * 330.00305 * 19 17 15 23 23 C 1.47419 * 125.65052 * 179.71211 * 8 6 5 24 24 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 25 25 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 26 26 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 29 29 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 30 30 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 31 31 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 32 32 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.88283 * 300.43812 * 9 8 6 34 34 H 1.08997 * 109.88184 * 61.44914 * 9 8 6 35 35 H 1.00907 * 111.00117 * 61.45282 * 12 10 9 36 36 H 1.00894 * 111.00532 * 185.40248 * 12 10 9 37 37 H 0.96996 * 119.99926 * 180.02562 * 18 17 15 38 38 H 1.08996 * 110.37327 * 274.75747 * 23 8 6 39 39 H 1.09007 * 110.36322 * 37.07483 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 2.9154 -2.1416 3.4978 10 6 3.1512 -3.2954 4.4952 11 1 2.4450 -3.2394 5.3237 12 7 4.5337 -3.2791 4.9913 13 6 2.8924 -4.5588 3.6326 14 1 3.7767 -4.8243 3.0534 15 6 2.4439 -5.7150 4.4889 16 1 2.3438 -5.5891 5.5569 17 6 2.1623 -6.9338 3.9091 18 7 2.2846 -7.0873 2.6087 19 14 1.6071 -8.3671 4.9707 20 1 0.1261 -8.3571 5.0805 21 1 2.0489 -9.6423 4.3511 22 1 2.2046 -8.2412 6.3243 23 6 1.7431 -4.0733 2.7107 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 3.8681 -1.8028 3.0910 34 1 2.4104 -1.3146 3.9968 35 1 4.7311 -2.4209 5.4840 36 1 4.7181 -4.0814 5.5748 37 1 2.0862 -7.9446 2.2008 38 1 0.7853 -4.1419 3.2263 39 1 1.7225 -4.6579 1.7909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257835892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:40 Heat of formation + Delta-G solvation = -105.061331 kcal Electronic energy + Delta-G solvation = -20117.985243 eV Core-core repulsion = 17059.525992 eV Total energy + Delta-G solvation = -3058.459251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78825 -39.70568 -37.65093 -35.35304 -34.69320 -34.26748 -31.05987 -28.57252 -28.35311 -28.24347 -27.08777 -24.26572 -22.23661 -21.28371 -20.31625 -18.92702 -18.61118 -17.56785 -17.32635 -16.53551 -16.34052 -16.07244 -15.88722 -15.34875 -14.85344 -14.42604 -14.38701 -14.07251 -13.82824 -13.32792 -13.29828 -13.04246 -12.90173 -12.84114 -12.83073 -12.55630 -12.45343 -12.34571 -12.25217 -12.18077 -11.36785 -11.16363 -11.10052 -11.06067 -10.62173 -9.65755 -9.47758 -8.17359 -6.29984 1.16007 1.45165 1.45847 1.55717 1.78921 2.42479 2.97156 3.14723 3.70160 3.79180 3.82372 3.94628 3.97402 4.16181 4.42285 4.51202 4.57555 4.62314 4.69323 4.77138 4.81888 4.84923 4.89891 4.99398 5.02681 5.07928 5.17939 5.30533 5.34847 5.40779 5.50334 5.60013 5.82266 6.18934 6.43029 6.57054 6.80392 6.84948 7.32210 7.40391 8.92177 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.005510 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.668014 B = 5080.049322 C = 5679.578819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 C -0.130 4.130 4 C -0.180 4.180 5 O -0.364 6.364 6 C 0.657 3.343 7 O -0.601 6.601 8 N -0.606 5.606 9 C 0.118 3.882 10 C 0.089 3.911 11 H 0.051 0.949 12 N -0.836 5.836 13 C 0.055 3.945 14 H 0.017 0.983 15 C -0.525 4.525 16 H 0.069 0.931 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.961 3.039 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.259 1.259 23 C 0.149 3.851 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.348 0.652 36 H 0.352 0.648 37 H 0.262 0.738 38 H 0.045 0.955 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 15.888 -0.493 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.082 3.918 3 C -0.187 4.187 4 C -0.237 4.237 5 O -0.279 6.279 6 C 0.413 3.587 7 O -0.493 6.493 8 N -0.346 5.346 9 C -0.005 4.005 10 C -0.023 4.023 11 H 0.069 0.931 12 N -0.369 5.369 13 C 0.035 3.965 14 H 0.036 0.964 15 C -0.564 4.564 16 H 0.087 0.913 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.183 1.183 23 C 0.027 3.973 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.263 15.683 -1.760 15.783 hybrid contribution -0.897 -1.297 0.960 1.846 sum -0.634 14.386 -0.800 14.422 Atomic orbital electron populations 1.22461 0.94045 1.03264 1.03769 1.22512 0.94765 0.93062 0.81468 1.21856 1.02370 0.89914 1.04544 1.22474 1.01502 1.01910 0.97848 1.86317 1.71702 1.22382 1.47489 1.17743 0.78847 0.80894 0.81258 1.90849 1.43198 1.71283 1.43999 1.47608 1.52267 1.13565 1.21166 1.22053 0.94466 0.96326 0.87645 1.22293 0.90052 0.94471 0.95434 0.93110 1.58520 1.22608 1.08364 1.47359 1.19785 0.92313 0.91872 0.92494 0.96449 1.21279 1.46009 0.95079 0.93991 0.91319 1.25861 0.95112 1.01582 0.95973 1.70105 1.48892 1.25509 1.11353 0.85511 0.78381 0.78265 0.79234 1.20420 1.21440 1.18322 1.22433 0.99446 0.76302 0.99121 0.91773 0.88484 0.92922 0.91278 0.87475 0.90961 0.93050 0.88387 0.92199 0.90706 0.90122 0.83847 0.83437 0.92866 0.93634 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.67 8.37 71.98 0.60 -4.07 16 2 C 0.12 3.20 1.13 -10.79 -0.01 3.18 16 3 C -0.13 -2.30 8.85 71.98 0.64 -1.66 16 4 C -0.18 -4.97 8.37 71.98 0.60 -4.37 16 5 O -0.36 -12.69 9.49 -55.54 -0.53 -13.22 16 6 C 0.66 28.06 7.93 129.79 1.03 29.09 16 7 O -0.60 -28.68 12.14 19.82 0.24 -28.44 16 8 N -0.61 -26.26 3.32 -941.65 -3.13 -29.39 16 9 C 0.12 4.20 6.64 86.73 0.58 4.77 16 10 C 0.09 3.36 3.52 46.10 0.16 3.52 16 11 H 0.05 1.86 8.02 -2.38 -0.02 1.84 16 12 N -0.84 -26.56 9.27 -163.77 -1.52 -28.08 16 13 C 0.06 2.70 2.54 -10.07 -0.03 2.67 16 14 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 15 C -0.53 -27.17 8.50 25.60 0.22 -26.96 16 16 H 0.07 3.35 7.77 -2.91 -0.02 3.33 16 17 C 0.01 0.79 5.37 84.65 0.45 1.25 16 18 N -0.92 -53.72 12.55 21.45 0.27 -53.45 16 19 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 C 0.15 7.46 5.90 86.93 0.51 7.97 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.80 5.88 -2.38 -0.01 1.79 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.84 5.88 -2.38 -0.01 1.83 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.35 8.40 9.07 -89.69 -0.81 7.59 16 36 H 0.35 11.20 9.07 -89.70 -0.81 10.38 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.05 2.33 8.04 -2.39 -0.02 2.31 16 39 H 0.04 2.44 7.64 -2.38 -0.02 2.42 16 Total: -1.00 -65.94 315.73 1.54 -64.40 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.58 Total: 28.48 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 4.76 Total: 15.39 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.38 Total: -110.92 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.29 Total: -41.67 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -65.94 1.54 -64.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257835892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.661 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds