Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46904 * 109.46661 * 65.00378 * 3 2 1 14 14 C 1.46847 * 110.99995 * 66.04801 * 13 3 2 15 15 C 1.53037 * 109.52476 * 185.83871 * 14 13 3 16 16 C 1.53122 * 109.27786 * 300.81947 * 15 14 13 17 17 C 1.53121 * 109.16061 * 57.65253 * 16 15 14 18 18 O 1.42899 * 109.50303 * 62.28366 * 17 16 15 19 19 C 1.50697 * 109.50290 * 182.36593 * 17 16 15 20 20 N 1.34772 * 120.00295 * 274.99692 * 19 17 16 21 21 O 1.21288 * 120.00089 * 95.00272 * 19 17 16 22 22 C 1.46844 * 110.99749 * 190.25582 * 13 3 2 23 23 H 1.09007 * 109.47234 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 25 25 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 26 26 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 27 27 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46072 * 305.85123 * 14 13 3 30 30 H 1.09000 * 109.46261 * 65.83015 * 14 13 3 31 31 H 1.08997 * 109.50428 * 60.75531 * 15 14 13 32 32 H 1.08996 * 109.50849 * 180.83880 * 15 14 13 33 33 H 1.08997 * 109.52638 * 177.55696 * 16 15 14 34 34 H 1.09003 * 109.52078 * 297.75197 * 16 15 14 35 35 H 0.96703 * 113.99389 * 60.00689 * 18 17 16 36 36 H 0.97005 * 119.99660 * 0.02562 * 20 19 17 37 37 H 0.97004 * 120.00617 * 179.97438 * 20 19 17 38 38 H 1.09000 * 109.46494 * 294.17793 * 22 13 3 39 39 H 1.08996 * 109.46274 * 54.14542 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 7 1.6514 2.0992 1.2553 14 6 2.3340 1.4873 2.4025 15 6 1.7983 2.0958 3.7005 16 6 2.0387 3.6080 3.6869 17 6 1.3583 4.2140 2.4563 18 8 -0.0521 3.9983 2.5363 19 6 1.6389 5.6937 2.4038 20 7 0.8626 6.5517 3.0949 21 8 2.5632 6.1125 1.7396 22 6 1.9067 3.5440 1.1944 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8287 -0.0519 -2.9548 29 1 2.1514 0.4127 2.4028 30 1 3.4054 1.6737 2.3293 31 1 0.7294 1.8981 3.7812 32 1 2.3156 1.6522 4.5512 33 1 1.6199 4.0516 4.5901 34 1 3.1098 3.8061 3.6454 35 1 -0.4668 4.3940 3.3151 36 1 0.1235 6.2167 3.6264 37 1 1.0434 7.5042 3.0614 38 1 2.9802 3.7206 1.1267 39 1 1.4139 3.9632 0.3172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309263899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = -116.943564 kcal Electronic energy + Delta-G solvation = -20781.948009 eV Core-core repulsion = 17722.973506 eV Total energy + Delta-G solvation = -3058.974504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57087 -39.45173 -37.67220 -35.46717 -34.40628 -33.67362 -32.34314 -31.00014 -28.49265 -25.75305 -25.17463 -23.87054 -22.34374 -20.86596 -20.72446 -19.30389 -18.29965 -17.82732 -17.35675 -16.65908 -16.21046 -15.78513 -15.56375 -15.36721 -15.16016 -14.87696 -14.46892 -13.87862 -13.64248 -13.43810 -13.21288 -13.16130 -13.01252 -12.77157 -12.62739 -12.33528 -12.08173 -11.93458 -11.67440 -11.53028 -11.48433 -11.07621 -10.88205 -10.74906 -10.49314 -10.40243 -8.89477 -8.03344 -6.26964 1.34804 1.36490 1.43410 1.43780 2.34228 2.38800 3.13179 3.24339 3.44477 3.61735 3.75582 4.04593 4.32068 4.35230 4.56291 4.61240 4.76774 4.82444 4.85981 4.93644 4.96351 5.01400 5.05145 5.18066 5.32033 5.44841 5.49448 5.53383 5.65015 5.80701 5.82533 6.08200 6.18504 6.27481 6.37795 6.67092 6.89548 6.94345 7.23558 7.43599 8.90758 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.021352 B = 0.007612 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.066114 B = 3677.752879 C = 4278.556150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.102 4.102 3 C 0.219 3.781 4 H -0.006 1.006 5 C -0.555 4.555 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.511 5.511 14 C 0.054 3.946 15 C -0.100 4.100 16 C -0.133 4.133 17 C 0.139 3.861 18 O -0.530 6.530 19 C 0.497 3.503 20 N -0.822 5.822 21 O -0.586 6.586 22 C 0.094 3.906 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.011 0.989 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.387 0.613 36 H 0.419 0.581 37 H 0.411 0.589 38 H 0.024 0.976 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 7.197 15.776 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.594 4.594 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.207 1.207 13 N -0.235 5.235 14 C -0.074 4.074 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.094 3.906 18 O -0.337 6.337 19 C 0.280 3.720 20 N -0.388 5.388 21 O -0.466 6.466 22 C -0.036 4.036 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.251 0.749 37 H 0.243 0.757 38 H 0.043 0.957 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.678 6.795 14.648 17.880 hybrid contribution 1.853 0.719 -0.340 2.016 sum -5.825 7.514 14.308 17.179 Atomic orbital electron populations 1.21553 0.96166 0.99787 1.00645 1.21402 0.94583 0.97584 1.00445 1.19059 0.91633 0.91875 0.86267 0.98761 1.21968 0.94227 1.37885 1.05319 0.93499 1.25598 1.01793 0.94927 0.95478 1.69991 1.36300 1.38962 1.09612 0.85842 0.81558 0.77961 0.77685 1.19430 1.20447 1.20735 1.62307 1.56491 1.00680 1.03999 1.22069 0.95160 0.99141 0.91076 1.21505 1.02904 0.93411 0.95956 1.22200 1.00682 0.97717 0.96513 1.21144 0.83741 0.88458 0.97284 1.86870 1.17522 1.79534 1.49766 1.21567 0.81667 0.90549 0.78171 1.43536 1.34114 1.10684 1.50498 1.90761 1.32835 1.79996 1.42962 1.21430 0.96952 0.90188 0.94994 0.93348 0.92147 0.95402 0.92063 0.94484 0.92853 0.91498 0.97112 0.89658 0.89375 0.86911 0.92397 0.76361 0.74867 0.75675 0.95737 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.80 71.98 0.71 -4.42 16 2 C -0.10 -4.98 5.17 30.60 0.16 -4.82 16 3 C 0.22 11.50 1.70 44.17 0.08 11.57 16 4 H -0.01 -0.34 7.98 -2.39 -0.02 -0.35 16 5 C -0.55 -31.56 7.23 25.60 0.19 -31.37 16 6 H 0.05 2.70 5.84 -2.91 -0.02 2.68 16 7 C 0.02 1.26 5.30 84.65 0.45 1.71 16 8 N -0.91 -53.75 11.30 21.45 0.24 -53.51 16 9 Si 0.94 45.51 29.54 68.60 2.03 47.54 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 13 N -0.51 -22.28 3.94 -875.50 -3.45 -25.73 16 14 C 0.05 2.06 4.78 86.33 0.41 2.47 16 15 C -0.10 -2.63 5.94 30.65 0.18 -2.45 16 16 C -0.13 -3.21 4.97 30.68 0.15 -3.06 16 17 C 0.14 4.09 0.94 -11.49 -0.01 4.08 16 18 O -0.53 -12.92 12.21 -148.98 -1.82 -14.74 16 19 C 0.50 14.24 7.00 87.66 0.61 14.85 16 20 N -0.82 -12.51 8.78 -173.54 -1.52 -14.03 16 21 O -0.59 -23.47 16.92 -3.05 -0.05 -23.52 16 22 C 0.09 4.04 3.71 86.33 0.32 4.36 16 23 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.06 2.36 7.75 -2.39 -0.02 2.34 16 25 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.06 3.38 5.96 -2.39 -0.01 3.37 16 27 H 0.04 1.74 6.23 -2.39 -0.01 1.72 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.07 2.62 6.13 -2.39 -0.01 2.61 16 30 H 0.01 0.46 6.36 -2.39 -0.02 0.45 16 31 H 0.08 2.09 7.80 -2.39 -0.02 2.07 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.39 4.31 7.59 -74.06 -0.56 3.74 16 36 H 0.42 2.74 7.33 -92.70 -0.68 2.06 16 37 H 0.41 5.30 8.93 -92.71 -0.83 4.48 16 38 H 0.02 1.22 7.01 -2.39 -0.02 1.20 16 39 H 0.04 1.95 8.01 -2.39 -0.02 1.93 16 Total: -1.00 -75.65 302.50 -2.32 -77.96 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -0.98 Total: 13.10 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 3.24 Total: -7.07 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.73 Total: -93.27 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.87 Total: -38.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.65 -2.32 -77.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309263899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.981 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds