Wall clock time and date at job start Mon Mar 30 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47487 * 2 1 4 4 H 1.09002 * 109.46489 * 325.51315 * 3 2 1 5 5 C 1.50699 * 109.47072 * 205.50924 * 3 2 1 6 6 H 1.07994 * 119.99477 * 245.97278 * 5 3 2 7 7 C 1.37879 * 120.00020 * 65.97612 * 5 3 2 8 8 N 1.31510 * 119.99662 * 185.84982 * 7 5 3 9 9 Si 1.86802 * 120.00080 * 5.84736 * 7 5 3 10 10 H 1.48494 * 109.46895 * 95.12164 * 9 7 5 11 11 H 1.48495 * 109.47146 * 215.12361 * 9 7 5 12 12 H 1.48507 * 109.46851 * 335.12214 * 9 7 5 13 13 N 1.46895 * 109.46915 * 85.50670 * 3 2 1 14 14 C 1.46845 * 111.00300 * 59.55727 * 13 3 2 15 15 C 1.53034 * 109.52780 * 174.15449 * 14 13 3 16 16 C 1.53126 * 109.27310 * 59.18135 * 15 14 13 17 17 C 1.53117 * 109.16184 * 302.34404 * 16 15 14 18 18 O 1.42902 * 109.50244 * 297.67568 * 17 16 15 19 19 C 1.50697 * 109.50137 * 177.59495 * 17 16 15 20 20 N 1.34783 * 119.99771 * 85.00313 * 19 17 16 21 21 O 1.21277 * 120.00556 * 264.99952 * 19 17 16 22 22 C 1.46847 * 111.00489 * 295.34537 * 13 3 2 23 23 H 1.09003 * 109.47404 * 171.03309 * 1 2 3 24 24 H 1.09002 * 109.47408 * 291.03815 * 1 2 3 25 25 H 1.09003 * 109.46740 * 51.03786 * 1 2 3 26 26 H 1.09002 * 109.47140 * 239.99918 * 2 1 3 27 27 H 1.09005 * 109.46623 * 120.00456 * 2 1 3 28 28 H 0.97004 * 119.99546 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46129 * 54.14075 * 14 13 3 30 30 H 1.09000 * 109.45314 * 294.17217 * 14 13 3 31 31 H 1.08995 * 109.50688 * 299.24336 * 15 14 13 32 32 H 1.09006 * 109.50409 * 179.11602 * 15 14 13 33 33 H 1.09008 * 109.52015 * 182.43634 * 16 15 14 34 34 H 1.09004 * 109.57594 * 62.28341 * 16 15 14 35 35 H 0.96703 * 113.99821 * 299.92206 * 18 17 16 36 36 H 0.97000 * 120.00233 * 359.97438 * 20 19 17 37 37 H 0.96993 * 120.00022 * 179.71843 * 20 19 17 38 38 H 1.09001 * 109.45897 * 65.82560 * 22 13 3 39 39 H 1.09001 * 109.46378 * 305.85955 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3626 2.0673 -0.5819 5 6 3.4165 1.4885 -0.6119 6 1 4.2681 1.7591 -0.0054 7 6 3.5884 1.1853 -1.9459 8 7 4.7997 1.1129 -2.4529 9 14 2.1009 0.8773 -3.0330 10 1 1.7314 2.1333 -3.7337 11 1 2.4274 -0.1701 -4.0336 12 1 0.9612 0.4240 -2.1956 13 7 2.1010 1.9402 1.3807 14 6 2.9983 1.1144 2.1988 15 6 3.1509 1.7440 3.5852 16 6 1.7744 1.8460 4.2483 17 6 0.8451 2.6703 3.3531 18 8 1.3626 3.9957 3.2204 19 6 -0.5287 2.7260 3.9700 20 7 -0.8119 3.6581 4.9014 21 8 -1.3795 1.9321 3.6283 22 6 0.7595 2.0138 1.9734 23 1 -0.3634 -1.0151 -0.1602 24 1 -0.3634 0.3689 0.9592 25 1 -0.3633 0.6462 -0.7991 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.9207 0.8992 -3.3913 29 1 3.9748 1.0534 1.7181 30 1 2.5796 0.1130 2.2987 31 1 3.5822 2.7402 3.4871 32 1 3.8045 1.1224 4.1973 33 1 1.8726 2.3334 5.2184 34 1 1.3590 0.8472 4.3830 35 1 1.4455 4.4713 4.0583 36 1 -0.1313 4.2928 5.1750 37 1 -1.6973 3.6965 5.2955 38 1 0.3515 1.0081 2.0744 39 1 0.1098 2.6062 1.3291 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309263900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:22 Heat of formation + Delta-G solvation = -101.512246 kcal Electronic energy + Delta-G solvation = -20898.579255 eV Core-core repulsion = 17840.273903 eV Total energy + Delta-G solvation = -3058.305351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.67122 -39.68421 -37.80436 -35.43071 -34.39104 -34.09226 -32.07101 -31.38911 -29.22002 -25.66326 -25.11870 -23.70551 -22.58405 -21.17384 -20.64968 -19.25098 -18.63519 -17.93752 -17.47698 -16.79769 -16.16139 -15.97071 -15.58817 -15.40689 -15.34240 -14.95067 -14.72348 -14.21818 -13.70265 -13.51892 -13.37476 -13.19063 -13.13017 -12.71145 -12.42077 -12.41819 -12.30428 -11.94965 -11.81938 -11.46036 -11.31056 -11.08522 -10.93474 -10.72948 -10.65715 -10.43928 -8.79096 -8.23767 -6.24756 1.34964 1.40248 1.44289 1.50643 2.33860 2.39239 3.09689 3.22478 3.35627 3.58637 3.73961 3.99734 4.20698 4.25418 4.27510 4.37451 4.45793 4.58559 4.68423 4.75887 4.77807 4.85683 4.97976 5.05458 5.14159 5.15778 5.23507 5.33684 5.43862 5.61897 5.67443 5.83118 6.07845 6.26881 6.49584 6.72902 6.81377 6.88108 7.22611 7.39825 8.91770 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.007124 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.292520 B = 3929.331775 C = 4359.325597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.155 4.155 3 C 0.194 3.806 4 H 0.026 0.974 5 C -0.498 4.498 6 H 0.042 0.958 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.913 3.087 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.209 1.209 13 N -0.520 5.520 14 C 0.054 3.946 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.130 3.870 18 O -0.536 6.536 19 C 0.501 3.499 20 N -0.825 5.825 21 O -0.579 6.579 22 C 0.072 3.928 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.263 0.737 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.386 0.614 36 H 0.417 0.583 37 H 0.412 0.588 38 H 0.061 0.939 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 3.821 18.106 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.194 4.194 3 C 0.086 3.914 4 H 0.043 0.957 5 C -0.537 4.537 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.131 1.131 13 N -0.243 5.243 14 C -0.074 4.074 15 C -0.140 4.140 16 C -0.170 4.170 17 C 0.085 3.915 18 O -0.343 6.343 19 C 0.285 3.715 20 N -0.391 5.391 21 O -0.458 6.458 22 C -0.057 4.057 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.249 0.751 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.198 3.547 17.002 20.141 hybrid contribution -0.445 -0.462 -0.414 0.763 sum -10.643 3.085 16.588 19.949 Atomic orbital electron populations 1.22256 0.95756 1.01692 1.01947 1.22555 0.95516 1.00258 1.01106 1.19536 0.94929 0.90189 0.86759 0.95659 1.21177 0.93115 1.44528 0.94835 0.93991 1.25682 0.98156 0.94946 0.99373 1.70050 1.23262 1.51423 1.14240 0.86454 0.82866 0.77783 0.79110 1.21195 1.21741 1.13094 1.61924 1.08232 1.52238 1.01924 1.22104 0.97183 0.93925 0.94206 1.21483 0.96511 1.02161 0.93880 1.22201 0.95182 1.00722 0.98885 1.21298 0.88781 0.85465 0.95921 1.86908 1.86350 1.24867 1.36139 1.21408 0.90268 0.80544 0.79300 1.43579 1.18943 1.34532 1.42028 1.90734 1.49887 1.42285 1.62920 1.22086 0.91478 0.98937 0.93161 0.92220 0.91435 0.93372 0.93458 0.92272 0.92843 0.92505 0.95573 0.90926 0.89409 0.87316 0.91079 0.76486 0.75056 0.75589 0.92117 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 8.79 71.98 0.63 -5.24 16 2 C -0.15 -6.65 4.14 30.59 0.13 -6.53 16 3 C 0.19 9.28 1.54 44.17 0.07 9.35 16 4 H 0.03 1.27 6.60 -2.39 -0.02 1.26 16 5 C -0.50 -28.68 8.46 25.60 0.22 -28.46 16 6 H 0.04 2.68 6.75 -2.91 -0.02 2.66 16 7 C 0.02 0.90 5.31 84.66 0.45 1.35 16 8 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.91 44.36 25.66 68.60 1.76 46.12 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 H -0.21 -9.08 3.66 99.48 0.36 -8.71 16 13 N -0.52 -21.64 4.52 -875.53 -3.96 -25.60 16 14 C 0.05 2.02 4.78 86.32 0.41 2.43 16 15 C -0.10 -2.74 5.94 30.65 0.18 -2.56 16 16 C -0.13 -2.83 4.97 30.68 0.15 -2.68 16 17 C 0.13 3.38 0.94 -11.49 -0.01 3.37 16 18 O -0.54 -12.91 12.21 -148.98 -1.82 -14.73 16 19 C 0.50 12.00 7.00 87.66 0.61 12.61 16 20 N -0.82 -10.20 8.78 -173.53 -1.52 -11.72 16 21 O -0.58 -19.02 16.91 -3.02 -0.05 -19.07 16 22 C 0.07 2.57 2.68 86.32 0.23 2.80 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 2.40 4.74 -2.39 -0.01 2.39 16 25 H 0.05 1.79 6.82 -2.39 -0.02 1.77 16 26 H 0.05 2.17 5.11 -2.39 -0.01 2.16 16 27 H 0.06 2.45 5.59 -2.38 -0.01 2.43 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.06 2.54 6.22 -2.38 -0.01 2.52 16 30 H 0.03 0.97 6.15 -2.39 -0.01 0.95 16 31 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.39 4.43 7.58 -74.06 -0.56 3.87 16 36 H 0.42 2.07 7.33 -92.71 -0.68 1.39 16 37 H 0.41 4.09 8.93 -92.71 -0.83 3.27 16 38 H 0.06 2.22 4.81 -2.39 -0.01 2.21 16 39 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -77.42 287.85 -3.53 -80.94 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -1.31 Total: 17.50 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.08 Total: -13.56 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -5.18 Total: -97.20 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.87 Total: -33.80 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.76 Total: 46.12 kcal Total: -77.42 -3.53 -80.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309263900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.570 kcal (2) G-P(sol) polarization free energy of solvation -77.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds