Wall clock time and date at job start Mon Mar 30 2020 04:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 N 1.46502 * 109.46545 * 240.00049 * 2 1 3 5 5 C 1.36928 * 120.00582 * 54.62972 * 4 2 1 6 6 H 1.08007 * 119.99620 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00580 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99978 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00316 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47507 * 120.00013 * 9 7 5 12 12 H 1.48501 * 109.47112 * 239.99657 * 9 7 5 13 13 C 1.50704 * 109.47057 * 120.00132 * 2 1 3 14 14 O 1.21278 * 119.99846 * 257.82762 * 13 2 1 15 15 N 1.34772 * 119.99851 * 77.82845 * 13 2 1 16 16 C 1.46925 * 120.62961 * 174.30693 * 15 13 2 17 17 C 1.53187 * 108.89644 * 126.45677 * 16 15 13 18 18 C 1.53045 * 109.31150 * 54.56674 * 17 16 15 19 19 O 1.42894 * 109.45804 * 178.62836 * 18 17 16 20 20 C 1.53035 * 109.53433 * 298.63388 * 18 17 16 21 21 C 1.46961 * 120.65724 * 354.11689 * 15 13 2 22 22 H 1.09004 * 109.46740 * 300.00035 * 1 2 3 23 23 H 1.08994 * 109.47279 * 59.99871 * 1 2 3 24 24 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46969 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46990 * 299.99819 * 3 2 1 27 27 H 1.08995 * 109.47207 * 60.00273 * 3 2 1 28 28 H 0.97001 * 119.99741 * 234.62513 * 4 2 1 29 29 H 0.96995 * 120.00591 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.58426 * 6.59830 * 16 15 13 31 31 H 1.09001 * 109.58636 * 246.32198 * 16 15 13 32 32 H 1.09001 * 109.49667 * 174.51475 * 17 16 15 33 33 H 1.08999 * 109.50029 * 294.58081 * 17 16 15 34 34 H 1.08996 * 109.46307 * 58.65202 * 18 17 16 35 35 H 0.96706 * 114.00206 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.49901 * 181.31667 * 20 18 17 37 37 H 1.09004 * 109.49931 * 301.37989 * 20 18 17 38 38 H 1.09000 * 109.46318 * 113.75682 * 21 15 13 39 39 H 1.08997 * 109.71040 * 353.47237 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 1.5993 -0.2904 -2.4369 6 1 0.9085 0.5342 -2.5336 7 6 2.0623 -0.9444 -3.5703 8 7 2.9044 -1.9490 -3.4526 9 14 1.4912 -0.3980 -5.2628 10 1 0.5530 0.7447 -5.1237 11 1 2.6652 0.0203 -6.0702 12 1 0.8010 -1.5250 -5.9401 13 6 2.0324 -0.7105 1.2305 14 8 2.4433 -0.0703 2.1750 15 7 2.0250 -2.0572 1.2812 16 6 2.6246 -2.7667 2.4195 17 6 1.5893 -3.7336 3.0025 18 6 1.0719 -4.6511 1.8922 19 8 0.1294 -5.5755 2.4391 20 6 0.3917 -3.8105 0.8093 21 6 1.4134 -2.8444 0.2013 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 2.6384 -1.4314 -1.1094 29 1 3.2283 -2.4059 -4.2446 30 1 2.9231 -2.0475 3.1822 31 1 3.4977 -3.3257 2.0828 32 1 2.0530 -4.3348 3.7847 33 1 0.7588 -3.1669 3.4235 34 1 1.9067 -5.1992 1.4555 35 1 -0.2412 -6.1894 1.7904 36 1 0.0029 -4.4663 0.0302 37 1 -0.4282 -3.2435 1.2502 38 1 2.1867 -3.4100 -0.3186 39 1 0.9132 -2.1781 -0.5014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309322771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:39 Heat of formation + Delta-G solvation = -68.758399 kcal Electronic energy + Delta-G solvation = -20751.762989 eV Core-core repulsion = 17694.877950 eV Total energy + Delta-G solvation = -3056.885038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18875 -37.99760 -35.85910 -35.49451 -32.29798 -31.29584 -30.79939 -28.85863 -26.52598 -25.23308 -24.13046 -23.01524 -21.73455 -20.07806 -18.39073 -17.29830 -17.15725 -16.59429 -15.52629 -14.94370 -14.64287 -14.50723 -14.14918 -13.75293 -13.68381 -13.15129 -12.87767 -12.81184 -12.21442 -11.99696 -11.67972 -11.59235 -11.53478 -11.35866 -11.12081 -11.03406 -10.96524 -10.80817 -10.60828 -10.36299 -10.18371 -9.82342 -9.71269 -9.10762 -8.92025 -8.29289 -7.10895 -5.90287 -3.21228 3.08976 3.35931 3.40589 3.43280 3.44309 4.18778 4.48214 4.78632 4.88116 5.14945 5.21352 5.25837 5.42049 5.44536 5.50769 5.69348 5.76903 5.80841 5.83761 5.92037 5.97619 6.08773 6.15757 6.28000 6.36363 6.42674 6.53360 6.61961 6.69341 6.81859 6.93439 7.05149 7.60936 7.61474 7.81409 8.24901 8.64458 9.38612 9.86433 10.24226 11.31502 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.007450 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.279902 B = 3757.279790 C = 4541.528906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 C -0.137 4.137 4 N -0.715 5.715 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.007 4.007 8 N -0.929 5.929 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.291 1.291 13 C 0.527 3.473 14 O -0.555 6.555 15 N -0.608 5.608 16 C 0.111 3.889 17 C -0.123 4.123 18 C 0.103 3.897 19 O -0.572 6.572 20 C -0.165 4.165 21 C 0.087 3.913 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.389 0.611 29 H 0.256 0.744 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.376 0.624 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -4.764 8.263 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 C -0.197 4.197 4 N -0.361 5.361 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.204 4.204 8 N -0.577 5.577 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.316 3.684 14 O -0.432 6.432 15 N -0.341 5.341 16 C -0.012 4.012 17 C -0.161 4.161 18 C 0.045 3.955 19 O -0.378 6.378 20 C -0.204 4.204 21 C -0.035 4.035 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.226 0.774 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.223 0.777 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.044 -4.016 9.167 10.794 hybrid contribution -0.107 -0.450 -1.597 1.662 sum -4.152 -4.466 7.570 9.721 Atomic orbital electron populations 1.22269 0.95388 1.01918 1.01524 1.19811 0.94011 0.92512 0.85014 1.22031 1.01227 0.95807 1.00668 1.42811 1.54568 1.38611 1.00120 1.19202 1.21920 1.13098 0.82975 0.90585 1.24729 0.99502 0.98353 0.97794 1.69658 1.35480 1.24042 1.28528 0.86125 0.77795 0.77741 0.84529 1.20478 1.21872 1.21859 1.21153 0.76641 0.81487 0.89120 1.90597 1.48117 1.65797 1.38680 1.48126 1.58054 1.05825 1.22073 1.21499 0.94864 0.94969 0.89906 1.21841 0.99613 0.97063 0.97607 1.21850 0.90636 0.89396 0.93641 1.86479 1.61732 1.49501 1.40066 1.22690 0.99721 0.99329 0.98672 1.22521 0.96280 0.95351 0.89380 0.93615 0.91005 0.92424 0.92993 0.91949 0.93322 0.77427 0.93410 0.88757 0.91576 0.90519 0.91016 0.92552 0.77672 0.90582 0.91162 0.90983 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.07 37.16 0.30 -2.40 16 2 C 0.18 3.60 0.72 -132.97 -0.10 3.51 16 3 C -0.14 -2.72 7.96 37.16 0.30 -2.42 16 4 N -0.72 -16.34 3.16 -48.30 -0.15 -16.49 16 5 C -0.24 -6.03 8.70 -15.07 -0.13 -6.16 16 6 H 0.08 1.86 6.69 -52.48 -0.35 1.51 16 7 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 8 N -0.93 -25.69 13.06 55.49 0.72 -24.97 16 9 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.53 10.46 6.52 -10.99 -0.07 10.39 16 14 O -0.55 -12.06 15.43 5.56 0.09 -11.97 16 15 N -0.61 -10.46 2.92 -172.75 -0.50 -10.96 16 16 C 0.11 1.62 6.44 -3.71 -0.02 1.60 16 17 C -0.12 -1.60 5.73 -26.61 -0.15 -1.75 16 18 C 0.10 1.30 3.43 -26.69 -0.09 1.21 16 19 O -0.57 -6.89 13.32 -35.23 -0.47 -7.36 16 20 C -0.17 -2.24 5.70 -26.61 -0.15 -2.39 16 21 C 0.09 1.45 4.24 -3.69 -0.02 1.44 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.29 6.99 -51.93 -0.36 0.93 16 24 H 0.06 0.99 6.20 -51.93 -0.32 0.66 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.22 7.59 -51.93 -0.39 0.82 16 27 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 28 H 0.39 9.45 5.90 -40.82 -0.24 9.21 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.38 3.01 9.08 45.56 0.41 3.42 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 39 H 0.14 2.67 3.55 -51.93 -0.18 2.49 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -29.26 304.15 -6.14 -35.40 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.15 Total: 13.06 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.23 Total: 2.74 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.07 Total: -52.42 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.38 Total: -19.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.26 -6.14 -35.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309322771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.355 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds