Wall clock time and date at job start Mon Mar 30 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46896 * 2 1 4 4 C 1.53002 * 109.46991 * 240.00012 * 2 1 3 5 5 C 1.50703 * 109.46935 * 59.99965 * 4 2 1 6 6 H 1.07993 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99826 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99830 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99990 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47517 * 90.00117 * 9 7 5 11 11 H 1.48503 * 109.47137 * 209.99801 * 9 7 5 12 12 H 1.48508 * 109.47100 * 329.99806 * 9 7 5 13 13 C 1.52992 * 109.47197 * 120.00340 * 2 1 3 14 14 N 1.46907 * 109.46944 * 299.99644 * 13 2 1 15 15 C 1.46901 * 110.99982 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47102 * 180.02562 * 15 14 13 17 17 H 1.09005 * 110.57434 * 307.70204 * 16 15 14 18 18 C 1.54098 * 110.52119 * 185.00094 * 16 15 14 19 19 N 1.47096 * 103.77403 * 241.36283 * 18 16 15 20 20 C 1.34004 * 108.88222 * 0.24629 * 19 18 16 21 21 O 1.21507 * 123.06992 * 179.76112 * 20 19 18 22 22 O 1.33779 * 113.85515 * 359.56165 * 20 19 18 23 23 H 1.09004 * 109.46959 * 299.99849 * 1 2 3 24 24 H 1.09004 * 109.47362 * 60.00021 * 1 2 3 25 25 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46763 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47385 * 299.99711 * 3 2 1 28 28 H 1.08990 * 109.47225 * 60.00035 * 3 2 1 29 29 H 1.09003 * 109.47137 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47251 * 299.99970 * 4 2 1 31 31 H 0.97001 * 119.99688 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47184 * 179.97438 * 13 2 1 33 33 H 1.09002 * 109.47757 * 59.99686 * 13 2 1 34 34 H 1.00903 * 110.99642 * 56.04865 * 14 13 2 35 35 H 1.09000 * 109.47078 * 59.99777 * 15 14 13 36 36 H 1.09005 * 109.47206 * 300.00042 * 15 14 13 37 37 H 1.08997 * 110.56346 * 122.79584 * 18 16 15 38 38 H 1.08995 * 110.56169 * 359.93623 * 18 16 15 39 39 H 0.97001 * 125.55524 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9450 -2.0003 -3.9035 10 1 2.0865 -3.2111 -3.9495 11 1 3.7373 -1.9075 -5.1560 12 1 3.8651 -2.0898 -2.7412 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0287 2.4486 15 6 2.0219 -0.6946 3.6703 16 6 1.4923 0.0532 4.8955 17 1 1.7299 1.1150 4.8284 18 6 2.0734 -0.5496 6.1891 19 7 0.8870 -1.0223 6.9189 20 6 -0.2053 -0.7557 6.1899 21 8 -1.3295 -1.0427 6.5507 22 8 0.0547 -0.1409 5.0306 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 -0.7217 -1.2491 30 1 1.6766 -1.7489 -1.2493 31 1 1.6674 -0.1927 -5.6868 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -1.7490 1.2492 34 1 0.5438 0.0413 2.4401 35 1 3.1117 -0.6941 3.6868 36 1 1.6587 -1.7222 3.6873 37 1 2.5983 0.2128 6.7647 38 1 2.7381 -1.3821 5.9586 39 1 0.8945 -1.4596 7.7848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309409212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:24 Heat of formation + Delta-G solvation = -84.712064 kcal Electronic energy + Delta-G solvation = -19343.534647 eV Core-core repulsion = 16285.957806 eV Total energy + Delta-G solvation = -3057.576841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82979 -38.04994 -37.34133 -35.05315 -34.58856 -32.26076 -30.35535 -27.69329 -26.38608 -26.16185 -24.22969 -22.98937 -22.24396 -21.70651 -18.43871 -18.00236 -17.29848 -16.85487 -16.68364 -15.58679 -15.27512 -14.79316 -14.60570 -14.21382 -13.96411 -13.85019 -13.31484 -13.17291 -12.74276 -12.42154 -12.19815 -12.07657 -11.94313 -11.11468 -10.97340 -10.94514 -10.89865 -10.84698 -10.50179 -10.35621 -9.83211 -9.77165 -9.68179 -9.31238 -8.91493 -8.49837 -8.33773 -5.99884 -3.96145 2.39633 2.48013 3.20549 3.31637 3.39425 3.42017 3.60920 4.14650 4.46232 4.47937 4.54968 4.78423 4.96332 5.10779 5.27902 5.32913 5.46703 5.54280 5.65051 5.85784 6.10179 6.21189 6.39792 6.40024 6.58991 6.67164 6.79019 6.97230 7.02460 7.10819 7.15109 7.22632 7.31717 7.42178 7.52195 7.79923 7.85007 8.59867 9.06266 9.63035 11.13269 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.041260 B = 0.003840 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.453959 B = 7289.602623 C = 7423.139313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.684 5.684 15 C 0.051 3.949 16 C 0.070 3.930 17 H 0.128 0.872 18 C 0.070 3.930 19 N -0.739 5.739 20 C 0.644 3.356 21 O -0.527 6.527 22 O -0.321 6.321 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.349 0.651 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -1.613 22.493 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.317 5.317 15 C -0.079 4.079 16 C 0.014 3.986 17 H 0.145 0.855 18 C -0.055 4.055 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.412 6.412 22 O -0.230 6.230 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.169 0.831 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.761 -1.135 22.113 22.648 hybrid contribution 0.287 -1.934 0.150 1.960 sum 5.048 -3.068 22.263 23.033 Atomic orbital electron populations 1.21800 0.95465 1.00599 1.01124 1.20427 0.95208 0.96216 0.93119 1.21614 0.99609 0.95451 1.00829 1.19629 0.95987 0.95250 0.93317 1.21138 1.31470 1.13262 0.88668 0.90383 1.25020 0.95812 0.96737 0.96030 1.69908 1.46139 1.40600 0.97833 0.86846 0.81281 0.84019 0.77480 1.20522 1.21554 1.19173 1.22162 0.99741 0.94827 0.89399 1.60582 1.17554 1.52909 1.00626 1.22296 1.00918 0.95481 0.89252 1.24106 0.76343 1.03283 0.94861 0.85461 1.22861 0.89242 1.00985 0.92451 1.45969 1.06382 1.64950 1.23936 1.18627 0.85354 0.76943 0.79449 1.91080 1.21484 1.56980 1.71631 1.87365 1.26609 1.72394 1.36670 0.94417 0.91074 0.94109 0.94206 0.92058 0.93628 0.96710 0.97407 0.92882 0.91386 0.95692 0.83088 0.88646 0.94408 0.88542 0.88746 0.72313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.89 37.16 0.29 -2.16 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -13.90 8.20 -34.44 -0.28 -14.18 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.07 1.03 4.65 -3.82 -0.02 1.01 16 14 N -0.68 -8.66 5.71 -113.78 -0.65 -9.31 16 15 C 0.05 0.46 5.24 -3.83 -0.02 0.44 16 16 C 0.07 0.54 4.07 -26.16 -0.11 0.44 16 17 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 18 C 0.07 0.32 7.71 -3.14 -0.02 0.30 16 19 N -0.74 -5.28 6.40 -64.72 -0.41 -5.69 16 20 C 0.64 7.87 9.16 53.71 0.49 8.36 16 21 O -0.53 -8.69 18.04 -19.11 -0.34 -9.04 16 22 O -0.32 -3.85 10.58 -37.85 -0.40 -4.25 16 23 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 24 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 4.76 6.57 -39.29 -0.26 4.50 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.29 7.73 -51.93 -0.40 -0.11 16 39 H 0.43 2.12 8.96 -40.82 -0.37 1.75 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -33.64 311.89 -6.72 -40.37 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.08 Total: 0.33 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 0.36 Total: -7.11 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.29 Total: -41.91 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.75 Total: -13.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.64 -6.72 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309409212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.345 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds