Wall clock time and date at job start Mon Mar 30 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 C 1.50702 * 109.46996 * 240.00276 * 2 1 3 5 5 H 1.08004 * 119.99866 * 239.99630 * 4 2 1 6 6 C 1.37881 * 120.00049 * 60.00015 * 4 2 1 7 7 N 1.31512 * 119.99879 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46786 * 59.99958 * 8 6 4 10 10 H 1.48496 * 109.47042 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47208 * 300.00400 * 8 6 4 12 12 C 1.53001 * 109.47440 * 120.00490 * 2 1 3 13 13 N 1.46496 * 109.46942 * 299.99956 * 12 2 1 14 14 C 1.34775 * 120.00217 * 179.97438 * 13 12 2 15 15 O 1.21278 * 119.99932 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00127 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.80421 * 300.70148 * 16 14 13 18 18 C 1.54998 * 110.90488 * 64.33000 * 16 14 13 19 19 O 1.44478 * 103.44508 * 155.23426 * 18 16 14 20 20 C 1.43746 * 106.98554 * 319.94809 * 19 18 16 21 21 C 1.54100 * 107.29659 * 26.51171 * 20 19 18 22 22 H 1.08995 * 110.60333 * 116.69803 * 21 20 19 23 23 N 1.46896 * 110.48913 * 239.29879 * 21 20 19 24 24 H 1.09003 * 109.47160 * 299.99149 * 1 2 3 25 25 H 1.08999 * 109.47295 * 60.00133 * 1 2 3 26 26 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47558 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47455 * 300.00617 * 3 2 1 29 29 H 1.09007 * 109.46858 * 60.00357 * 3 2 1 30 30 H 0.97001 * 120.00228 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46956 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47256 * 59.99795 * 12 2 1 33 33 H 0.97004 * 120.00203 * 0.02562 * 13 12 2 34 34 H 1.08997 * 110.61738 * 273.75567 * 18 16 14 35 35 H 1.08997 * 110.62197 * 36.75703 * 18 16 14 36 36 H 1.09002 * 109.87733 * 267.08885 * 20 19 18 37 37 H 1.08999 * 109.88004 * 145.93837 * 20 19 18 38 38 H 1.00897 * 110.99793 * 294.76320 * 23 21 20 39 39 H 1.00900 * 111.00030 * 58.72265 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.8279 -2.5196 -4.0083 10 1 1.8267 -0.4196 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8769 -0.4916 3.6694 15 8 2.5742 -1.4777 3.7807 16 6 1.3751 0.2191 4.9000 17 1 1.7169 1.2540 4.9158 18 6 -0.1706 0.1456 4.9893 19 8 -0.4329 0.2959 6.4021 20 6 0.5718 -0.4604 7.0986 21 6 1.8109 -0.5265 6.1849 22 1 2.6577 -0.0219 6.6499 23 7 2.1504 -1.9226 5.8791 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 0.7088 1.1616 -3.4844 31 1 3.1300 -0.7209 1.2493 32 1 1.6767 -1.7490 1.2491 33 1 0.9937 0.7576 2.3564 34 1 -0.6267 0.9589 4.4249 35 1 -0.5303 -0.8195 4.6327 36 1 0.2051 -1.4670 7.2992 37 1 0.8274 0.0365 8.0344 38 1 2.4357 -2.4160 6.7117 39 1 1.3797 -2.3915 5.4271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315536396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:45 Heat of formation + Delta-G solvation = -89.605361 kcal Electronic energy + Delta-G solvation = -20020.438703 eV Core-core repulsion = 16962.649673 eV Total energy + Delta-G solvation = -3057.789030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44341 -39.59932 -37.95135 -35.20480 -34.67149 -32.90260 -31.35952 -28.63080 -27.53454 -27.43508 -26.70271 -24.36737 -22.65715 -20.82773 -20.50389 -18.57454 -18.05193 -17.66664 -16.66589 -16.51013 -16.34156 -16.10030 -15.75676 -15.48061 -14.84997 -14.75390 -14.41960 -14.18090 -13.90146 -13.37421 -13.18207 -13.08813 -13.02440 -12.64002 -12.60715 -12.36611 -12.22389 -12.11154 -11.92247 -11.44174 -11.18550 -10.82223 -10.71058 -10.53369 -10.37156 -9.75731 -9.13185 -8.00234 -6.15808 1.44828 1.46134 1.52565 1.86266 2.34368 2.51087 2.93780 3.23254 3.33457 3.67506 3.79723 3.97176 4.09973 4.17686 4.28225 4.52101 4.57582 4.69269 4.73744 4.74428 4.77282 4.98997 5.06199 5.09268 5.15616 5.23242 5.43232 5.68977 5.69051 5.70162 5.71665 6.18478 6.25347 6.30272 6.46350 6.63528 6.85731 6.88731 7.51820 7.55155 8.98201 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.004667 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.036194 B = 5998.180079 C = 6335.379661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.154 3.846 13 N -0.718 5.718 14 C 0.506 3.494 15 O -0.531 6.531 16 C -0.139 4.139 17 H 0.130 0.870 18 C 0.059 3.941 19 O -0.386 6.386 20 C 0.012 3.988 21 C 0.079 3.921 22 H 0.107 0.893 23 N -0.815 5.815 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.403 0.597 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.340 0.660 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 1.069 16.549 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.030 3.970 13 N -0.371 5.371 14 C 0.292 3.708 15 O -0.406 6.406 16 C -0.162 4.162 17 H 0.147 0.853 18 C -0.018 4.018 19 O -0.305 6.305 20 C -0.067 4.067 21 C -0.035 4.035 22 H 0.125 0.875 23 N -0.346 5.346 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.240 0.760 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.580 0.874 16.110 16.211 hybrid contribution -0.450 -0.561 -0.717 1.015 sum -2.029 0.313 15.394 15.530 Atomic orbital electron populations 1.21654 0.97097 0.98600 1.00364 1.18353 0.93254 0.92954 0.90466 1.21661 0.97793 0.97977 1.00340 1.21263 1.31651 1.12125 0.91684 0.93882 1.25436 0.95178 0.95590 1.00903 1.69900 1.37019 1.23257 1.23587 0.85853 0.78606 0.78842 0.79710 1.20287 1.20854 1.20338 1.21136 0.96634 0.94893 0.84375 1.46246 1.53409 1.32106 1.05353 1.20589 0.80919 0.84946 0.84395 1.90784 1.37395 1.26329 1.86081 1.23011 0.97828 1.02296 0.93015 0.85250 1.23573 0.92010 1.03003 0.83182 1.88894 1.52059 1.71915 1.17626 1.24381 0.87991 0.96911 0.97368 1.22690 0.97273 0.91320 0.92199 0.87455 1.58969 1.44092 1.01568 1.29991 0.94280 0.92109 0.96365 0.96507 0.92056 0.94363 0.93086 0.94876 0.94594 0.76018 0.86380 0.92375 0.91968 0.87570 0.84555 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.69 16 4 C -0.53 -27.88 8.01 25.60 0.21 -27.67 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.51 5.15 84.66 0.44 1.94 16 7 N -0.90 -47.79 9.35 21.45 0.20 -47.59 16 8 Si 0.94 42.56 29.54 68.60 2.03 44.59 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.40 4.50 86.38 0.39 6.79 16 13 N -0.72 -23.41 4.94 -463.07 -2.29 -25.70 16 14 C 0.51 15.73 6.91 87.66 0.61 16.33 16 15 O -0.53 -20.34 13.38 -3.02 -0.04 -20.38 16 16 C -0.14 -3.07 3.47 -10.24 -0.04 -3.10 16 17 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 18 C 0.06 1.20 7.16 72.67 0.52 1.72 16 19 O -0.39 -8.24 11.52 -148.98 -1.72 -9.96 16 20 C 0.01 0.21 7.48 72.35 0.54 0.75 16 21 C 0.08 1.55 4.04 45.91 0.19 1.74 16 22 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 23 N -0.81 -18.91 6.35 -164.58 -1.05 -19.96 16 24 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 25 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 29 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 30 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.40 11.49 6.16 -92.70 -0.57 10.91 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.27 8.04 -2.39 -0.02 1.25 16 36 H 0.06 0.99 7.93 -2.39 -0.02 0.97 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.34 6.18 9.08 -89.70 -0.81 5.36 16 39 H 0.34 8.34 8.26 -89.69 -0.74 7.60 16 Total: -1.00 -61.05 306.31 0.06 -60.99 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -1.05 Total: 26.56 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 3.98 Total: -8.54 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.13 Total: -93.25 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.76 Total: -30.34 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -61.05 0.06 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315536396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.620 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds