Wall clock time and date at job start Mon Mar 30 2020 04:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47108 * 2 1 4 4 C 1.52997 * 109.47518 * 239.99717 * 2 1 3 5 5 C 1.50705 * 109.46651 * 60.00151 * 4 2 1 6 6 H 1.07998 * 120.00091 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99848 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47048 * 89.99889 * 9 7 5 11 11 H 1.48502 * 109.47374 * 210.00132 * 9 7 5 12 12 H 1.48502 * 109.47313 * 330.00198 * 9 7 5 13 13 C 1.53002 * 109.47221 * 119.99999 * 2 1 3 14 14 N 1.46501 * 109.47017 * 300.00057 * 13 2 1 15 15 C 1.34773 * 120.00107 * 179.97438 * 14 13 2 16 16 O 1.21593 * 119.99896 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00250 * 180.02562 * 15 14 13 18 18 C 1.47788 * 126.99461 * 180.02562 * 17 15 14 19 19 C 1.54456 * 104.75292 * 205.04285 * 18 17 15 20 20 C 1.54656 * 103.54519 * 358.96074 * 19 18 17 21 21 O 1.43305 * 126.94419 * 359.95915 * 17 15 14 22 22 H 1.08996 * 109.47333 * 299.99968 * 1 2 3 23 23 H 1.08997 * 109.46986 * 60.00434 * 1 2 3 24 24 H 1.09004 * 109.47033 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47007 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47010 * 300.00142 * 3 2 1 27 27 H 1.09002 * 109.46666 * 60.00109 * 3 2 1 28 28 H 1.08998 * 109.47507 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47523 * 300.00414 * 4 2 1 30 30 H 0.96999 * 119.99934 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47647 * 180.02562 * 13 2 1 32 32 H 1.09004 * 109.47196 * 60.00003 * 13 2 1 33 33 H 0.97002 * 120.00226 * 0.02562 * 14 13 2 34 34 H 1.08992 * 110.38323 * 86.22471 * 18 17 15 35 35 H 1.08997 * 110.37949 * 323.86244 * 18 17 15 36 36 H 1.08996 * 110.60674 * 240.44290 * 19 18 17 37 37 H 1.09001 * 110.74134 * 117.53783 * 19 18 17 38 38 H 1.09002 * 110.59882 * 95.77108 * 20 19 18 39 39 H 1.08999 * 110.59607 * 218.56045 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6266 -1.5515 -3.8526 9 14 1.2473 0.3979 -5.2572 10 1 2.2252 1.4396 -5.6619 11 1 1.0819 -0.5815 -6.3611 12 1 -0.0608 1.0355 -4.9611 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5759 -1.4800 3.7811 17 7 1.4271 0.1437 4.7700 18 6 1.6871 -0.2241 6.1776 19 6 0.4956 0.3648 6.9645 20 6 -0.3489 1.0639 5.8736 21 8 0.6007 1.3137 4.8120 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9562 0.8900 28 1 3.1301 -0.7209 -1.2494 29 1 1.6767 -1.7489 -1.2492 30 1 2.8603 -1.8833 -4.7336 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7490 1.2493 33 1 0.9937 0.7578 2.3564 34 1 2.6230 0.2181 6.5188 35 1 1.7161 -1.3081 6.2875 36 1 0.8430 1.0876 7.7027 37 1 -0.0787 -0.4271 7.4453 38 1 -1.1475 0.4077 5.5275 39 1 -0.7598 2.0012 6.2487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359733515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:34 Heat of formation + Delta-G solvation = -52.358552 kcal Electronic energy + Delta-G solvation = -19581.929326 eV Core-core repulsion = 16525.755439 eV Total energy + Delta-G solvation = -3056.173887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29626 -39.66508 -38.56101 -35.29913 -34.03572 -33.47202 -32.42166 -29.10086 -27.98061 -27.85648 -26.15131 -24.64565 -22.78638 -21.83848 -20.35793 -19.21512 -18.36008 -17.71193 -17.45389 -16.64036 -16.38795 -16.13832 -15.78180 -15.19789 -15.14751 -14.72397 -14.39441 -14.11993 -13.93760 -13.87626 -13.32028 -12.96610 -12.86700 -12.71859 -12.60930 -12.40269 -12.34104 -12.22419 -11.97723 -11.70520 -11.55085 -11.32860 -11.00173 -10.86200 -10.49864 -10.38272 -9.68614 -8.12628 -6.20356 0.84545 1.43800 1.44181 1.54640 1.90805 2.27502 2.46431 3.21829 3.47584 3.60549 3.94401 3.96223 4.07479 4.11730 4.21425 4.45326 4.65473 4.67812 4.70273 4.71589 4.75066 4.94960 4.97122 4.99500 5.08073 5.11080 5.30030 5.36747 5.46417 5.49038 5.51396 5.57736 5.79776 5.81090 5.90787 6.31997 6.80619 6.94414 7.33190 7.47194 8.99982 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.047293 B = 0.004079 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.913617 B = 6862.103892 C = 7209.751013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.260 1.260 13 C 0.158 3.842 14 N -0.718 5.718 15 C 0.731 3.269 16 O -0.616 6.616 17 N -0.513 5.513 18 C 0.107 3.893 19 C -0.143 4.143 20 C 0.019 3.981 21 O -0.173 6.173 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.061 0.939 28 H -0.012 1.012 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.410 0.590 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 7.796 21.774 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.184 1.184 13 C 0.033 3.967 14 N -0.374 5.374 15 C 0.434 3.566 16 O -0.497 6.497 17 N -0.299 5.299 18 C -0.014 4.014 19 C -0.181 4.181 20 C -0.058 4.058 21 O -0.176 6.176 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.195 7.136 21.484 23.754 hybrid contribution -0.194 0.183 -1.148 1.179 sum -7.389 7.319 20.336 22.841 Atomic orbital electron populations 1.21672 0.93658 1.01021 1.01354 1.20718 0.96699 0.96259 0.92775 1.21680 0.99991 0.94758 1.01358 1.18961 0.94419 0.94280 0.91996 1.21586 1.30486 1.12090 0.91073 0.90998 1.25939 0.95665 0.95841 1.02670 1.70122 1.38786 1.24919 1.24103 0.85535 0.79163 0.78110 0.78768 1.20182 1.21506 1.18381 1.21199 0.97791 0.95136 0.82527 1.45078 1.55620 1.33327 1.03338 1.15359 0.80029 0.81452 0.79773 1.90953 1.45191 1.28516 1.85025 1.50246 1.49636 1.24034 1.05981 1.22668 1.00314 1.01623 0.76748 1.23316 0.94663 1.02084 0.98067 1.24235 0.91150 1.03784 0.86630 1.91379 1.44969 1.22058 1.59151 0.91927 0.92370 0.94154 0.94259 0.92312 0.91971 0.99343 0.99251 0.93150 0.93345 0.93201 0.75235 0.89934 0.89667 0.86972 0.87325 0.91087 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 2 C -0.06 -2.54 0.54 -52.18 -0.03 -2.56 16 3 C -0.12 -4.33 8.05 71.98 0.58 -3.75 16 4 C 0.04 2.12 4.04 29.85 0.12 2.25 16 5 C -0.51 -27.90 7.65 25.60 0.20 -27.70 16 6 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 13 C 0.16 6.03 4.56 86.38 0.39 6.43 16 14 N -0.72 -23.36 4.96 -478.52 -2.37 -25.74 16 15 C 0.73 24.89 8.66 179.05 1.55 26.44 16 16 O -0.62 -25.44 16.71 -4.01 -0.07 -25.51 16 17 N -0.51 -13.33 3.88 -473.22 -1.84 -15.17 16 18 C 0.11 1.93 7.27 86.63 0.63 2.56 16 19 C -0.14 -1.27 7.13 31.65 0.23 -1.04 16 20 C 0.02 0.22 7.92 72.55 0.57 0.80 16 21 O -0.17 -3.71 11.96 -42.71 -0.51 -4.22 16 22 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 23 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 2.21 6.62 -2.39 -0.02 2.19 16 27 H 0.06 1.82 6.86 -2.39 -0.02 1.81 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.41 11.69 5.75 -92.71 -0.53 11.16 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.62 315.31 3.31 -68.31 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.50 Total: 13.57 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 5.28 Total: -0.04 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.93 Total: -98.03 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.58 Total: -29.73 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.62 3.31 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359733515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.952 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds