Wall clock time and date at job start Mon Mar 30 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46899 * 109.47037 * 60.00153 * 4 2 1 6 6 C 1.46896 * 111.00272 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47203 * 179.97438 * 6 5 4 8 8 O 1.21271 * 120.00292 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99917 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00327 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47273 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00365 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99629 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00290 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99819 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47339 * 89.99784 * 15 13 11 17 17 H 1.48506 * 109.47163 * 210.00079 * 15 13 11 18 18 H 1.48498 * 109.46932 * 329.99728 * 15 13 11 19 19 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 20 20 C 1.53001 * 117.51964 * 231.28841 * 19 2 1 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 2 22 22 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 23 23 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 24 24 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 25 25 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 27 27 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 28 28 H 1.00900 * 111.00520 * 56.04391 * 5 4 2 29 29 H 1.09006 * 109.47009 * 299.99660 * 6 5 4 30 30 H 1.08997 * 109.47556 * 59.99733 * 6 5 4 31 31 H 0.97009 * 119.99945 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.46785 * 300.00200 * 10 9 7 33 33 H 1.08999 * 109.47122 * 60.00020 * 10 9 7 34 34 H 0.97008 * 120.00209 * 180.02562 * 14 13 11 35 35 H 1.09002 * 115.54973 * 85.58625 * 19 2 1 36 36 H 1.09001 * 117.49733 * 214.97413 * 20 19 2 37 37 H 1.08995 * 117.49577 * 359.97438 * 20 19 2 38 38 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 39 39 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5505 -0.0288 -2.4486 6 6 2.0211 -0.6952 -3.6702 7 6 1.4995 0.0414 -4.8771 8 8 0.8047 1.0249 -4.7337 9 7 1.8061 -0.3923 -6.1158 10 6 1.2996 0.3240 -7.2890 11 6 1.7823 -0.3598 -8.5422 12 1 2.4045 -1.2397 -8.4718 13 6 1.4304 0.1386 -9.7786 14 7 0.6731 1.2104 -9.8644 15 14 2.0281 -0.7094 -11.3320 16 1 1.0425 -1.7411 -11.7434 17 1 2.1772 0.2933 -12.4173 18 1 3.3398 -1.3543 -11.0704 19 6 2.0400 -0.7212 1.2493 20 6 3.0757 0.0040 2.1109 21 6 1.6373 -0.1482 2.6097 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.9702 1.4238 0.0004 26 1 3.1301 -0.7208 -1.2493 27 1 1.6767 -1.7489 -1.2492 28 1 1.8198 0.9435 -2.4402 29 1 3.1110 -0.6954 -3.6872 30 1 1.6573 -1.7226 -3.6869 31 1 2.3622 -1.1789 -6.2305 32 1 0.2097 0.3239 -7.2722 33 1 1.6631 1.3515 -7.2723 34 1 0.4252 1.5608 -10.7343 35 1 2.1253 -1.8046 1.1648 36 1 3.8425 -0.6023 2.5932 37 1 3.3942 0.9949 1.7876 38 1 1.0093 0.7428 2.6145 39 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381349323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:14 Heat of formation + Delta-G solvation = -96.157684 kcal Electronic energy + Delta-G solvation = -18769.863785 eV Core-core repulsion = 15711.790625 eV Total energy + Delta-G solvation = -3058.073160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66778 -40.14802 -36.77476 -36.08478 -35.50765 -34.33513 -32.21128 -29.89275 -28.08593 -26.11923 -24.36180 -23.14887 -22.96250 -21.44437 -20.82842 -19.07682 -17.99672 -17.65005 -17.18089 -16.91757 -16.72092 -16.11430 -15.79524 -15.45786 -14.87018 -14.72968 -14.30958 -14.08114 -13.86444 -13.71222 -13.18912 -13.09618 -13.01300 -12.90755 -12.71774 -12.59060 -12.23670 -12.22548 -11.89636 -11.48752 -11.39262 -10.98085 -10.90150 -10.80351 -10.57202 -9.81919 -9.32812 -8.29132 -6.46064 1.43085 1.45797 1.56935 1.80507 2.29089 2.49264 2.86462 3.05668 3.16644 3.48137 3.76608 3.91637 4.00561 4.03428 4.19840 4.28625 4.40151 4.41048 4.50311 4.70775 4.81235 4.85252 4.97940 5.01998 5.11187 5.15200 5.24294 5.28082 5.30964 5.45800 5.49248 5.69175 5.85049 5.98074 6.33086 6.65597 6.84546 6.95546 7.23730 7.53788 8.83213 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.064142 B = 0.003039 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.426188 B = 9211.452695 C = 9378.814224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 O -0.571 6.571 4 C 0.042 3.958 5 N -0.685 5.685 6 C 0.058 3.942 7 C 0.490 3.510 8 O -0.593 6.593 9 N -0.709 5.709 10 C 0.267 3.733 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.254 1.254 19 C -0.183 4.183 20 C -0.173 4.173 21 C -0.174 4.174 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.382 0.618 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.346 0.654 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.409 0.591 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -8.749 22.513 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.124 3.876 3 O -0.379 6.379 4 C -0.087 4.087 5 N -0.318 5.318 6 C -0.074 4.074 7 C 0.277 3.723 8 O -0.474 6.474 9 N -0.360 5.360 10 C 0.144 3.856 11 C -0.593 4.593 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.202 4.202 20 C -0.210 4.210 21 C -0.211 4.211 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.232 0.768 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.245 0.755 32 H 0.002 0.998 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.968 -8.131 22.483 24.642 hybrid contribution 1.475 0.027 -1.096 1.838 sum 7.443 -8.104 21.387 24.052 Atomic orbital electron populations 1.21586 0.92868 1.02495 1.01538 1.20700 0.94641 0.81085 0.91203 1.86619 1.27511 1.26984 1.96810 1.22655 0.98055 0.99118 0.88861 1.60001 1.64448 1.06950 1.00384 1.21765 0.99587 0.99211 0.86877 1.21507 0.80290 0.84816 0.85641 1.90649 1.40403 1.29358 1.86992 1.46175 1.52431 1.31810 1.05557 1.18508 0.92589 0.91327 0.83200 1.21631 1.33315 1.13713 0.90664 0.89671 1.26105 0.94699 0.95472 1.03518 1.70148 1.36941 1.23774 1.26240 0.85135 0.79253 0.77816 0.76874 1.19600 1.21016 1.17773 1.22981 1.05382 1.00186 0.91629 1.23049 0.92567 1.02311 1.03024 1.22907 0.98402 1.03086 0.96679 0.92762 0.93277 0.90405 0.76801 0.93211 0.88874 0.83482 0.89794 0.86034 0.75545 0.99784 0.99644 0.92261 0.85978 0.87516 0.88298 0.89761 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.53 71.98 0.61 -2.16 16 2 C 0.16 2.98 0.98 -10.79 -0.01 2.97 16 3 O -0.57 -11.72 11.47 -148.98 -1.71 -13.43 16 4 C 0.04 0.75 4.82 86.30 0.42 1.16 16 5 N -0.68 -18.07 5.36 -517.95 -2.78 -20.84 16 6 C 0.06 1.49 6.17 85.56 0.53 2.02 16 7 C 0.49 19.73 7.87 87.66 0.69 20.42 16 8 O -0.59 -30.32 16.20 -3.00 -0.05 -30.37 16 9 N -0.71 -29.95 5.55 -466.80 -2.59 -32.54 16 10 C 0.27 14.87 5.43 85.63 0.46 15.34 16 11 C -0.56 -30.38 9.28 25.60 0.24 -30.14 16 12 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.08 5.46 84.66 0.46 0.55 16 14 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 15 Si 0.99 42.40 29.54 68.60 2.03 44.42 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 19 C -0.18 -2.45 5.15 -10.79 -0.06 -2.50 16 20 C -0.17 -1.99 9.74 30.59 0.30 -1.70 16 21 C -0.17 -2.35 9.67 30.60 0.30 -2.06 16 22 H 0.05 1.14 7.29 -2.39 -0.02 1.13 16 23 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 24 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 25 H 0.38 5.31 7.56 -74.06 -0.56 4.75 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.35 10.42 7.82 -89.69 -0.70 9.71 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.41 13.92 8.32 -92.70 -0.77 13.15 16 32 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 33 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.12 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.14 6.38 -2.39 -0.02 1.12 16 38 H 0.08 1.39 7.61 -2.39 -0.02 1.37 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -74.56 325.69 -1.84 -76.40 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.97 Total: 29.12 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 3.94 Total: 3.90 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.08 Total: -110.04 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.76 Total: -43.80 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -74.56 -1.84 -76.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381349323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.759 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds