Wall clock time and date at job start Mon Mar 30 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.35396 * 2 1 4 4 O 1.42906 * 109.46944 * 57.86281 * 3 2 1 5 5 C 1.54598 * 110.31066 * 122.14713 * 2 1 3 6 6 C 1.54933 * 102.92145 * 96.95604 * 5 2 1 7 7 N 1.48534 * 103.23107 * 37.41701 * 6 5 2 8 8 C 1.46902 * 111.00254 * 200.27994 * 7 6 5 9 9 C 1.50698 * 109.47215 * 287.39488 * 8 7 6 10 10 O 1.21280 * 119.99901 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00288 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47115 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 C 1.47903 * 105.81618 * 320.79198 * 7 6 5 22 22 H 1.09001 * 109.47590 * 182.13925 * 1 2 3 23 23 H 1.09003 * 109.47236 * 302.13878 * 1 2 3 24 24 H 1.09000 * 109.47045 * 62.13591 * 1 2 3 25 25 H 1.09004 * 109.47085 * 177.85653 * 3 2 1 26 26 H 1.08999 * 109.47412 * 297.85722 * 3 2 1 27 27 H 0.96700 * 113.99620 * 179.97438 * 4 3 2 28 28 H 1.08998 * 110.72341 * 215.30941 * 5 2 1 29 29 H 1.09001 * 110.72236 * 338.42363 * 5 2 1 30 30 H 1.09003 * 110.67226 * 278.98136 * 6 5 2 31 31 H 1.09003 * 110.67136 * 155.85197 * 6 5 2 32 32 H 1.09000 * 109.46932 * 167.39216 * 8 7 6 33 33 H 1.09002 * 109.46978 * 47.39154 * 8 7 6 34 34 H 0.97001 * 119.99493 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46734 * 60.00204 * 12 11 9 36 36 H 1.09002 * 109.47081 * 299.99975 * 12 11 9 37 37 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.91682 * 144.68561 * 21 7 6 39 39 H 1.09004 * 109.91671 * 265.97694 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4344 0.0000 4 8 1.5558 2.1303 1.1409 5 6 2.0666 -0.7715 1.2276 6 6 2.3584 -2.1797 0.6513 7 7 2.8809 -1.8891 -0.7084 8 6 2.7667 -3.0667 -1.5791 9 6 3.7891 -4.0953 -1.1696 10 8 4.5393 -3.8694 -0.2438 11 7 3.8698 -5.2663 -1.8320 12 6 4.8641 -6.2659 -1.4342 13 6 4.7469 -7.4740 -2.3273 14 1 4.0062 -7.4950 -3.1131 15 6 5.5861 -8.5523 -2.1422 16 7 6.4884 -8.5266 -1.1857 17 14 5.4357 -10.0530 -3.2444 18 1 6.3163 -9.8875 -4.4286 19 1 5.8441 -11.2646 -2.4892 20 1 4.0272 -10.1995 -3.6914 21 6 2.0644 -0.7683 -1.2229 22 1 -0.3634 -1.0269 0.0384 23 1 -0.3634 0.5467 0.8702 24 1 -0.3633 0.4803 -0.9085 25 1 3.1513 1.4179 0.0384 26 1 1.7383 1.9421 -0.9085 27 1 1.8534 3.0481 1.2057 28 1 2.9807 -0.3114 1.6029 29 1 1.3114 -0.8216 2.0119 30 1 1.4432 -2.7692 0.5939 31 1 3.1104 -2.6926 1.2509 32 1 2.9422 -2.7719 -2.6137 33 1 1.7671 -3.4913 -1.4867 34 1 3.2700 -5.4467 -2.5726 35 1 4.6893 -6.5603 -0.3994 36 1 5.8637 -5.8413 -1.5273 37 1 7.0790 -9.2850 -1.0557 38 1 2.6812 -0.1100 -1.8347 39 1 1.2323 -1.1547 -1.8115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381512580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:21 Heat of formation + Delta-G solvation = -89.592287 kcal Electronic energy + Delta-G solvation = -19172.417279 eV Core-core repulsion = 16114.628815 eV Total energy + Delta-G solvation = -3057.788463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92484 -38.42885 -36.59739 -34.14442 -33.30532 -32.28387 -29.91384 -28.22033 -27.01955 -26.23208 -24.17721 -22.49141 -21.23319 -19.67513 -19.16524 -17.56577 -17.04096 -16.06518 -15.69164 -15.34588 -15.05985 -14.86204 -14.66516 -14.11982 -13.90233 -13.40395 -13.01213 -12.91523 -12.51589 -12.29659 -12.09311 -11.99130 -11.85382 -11.57750 -11.19294 -10.99515 -10.95221 -10.86290 -10.66014 -10.58615 -10.30065 -10.12473 -9.37857 -8.98942 -8.71402 -8.26766 -7.82281 -6.15230 -4.22056 3.24770 3.30703 3.33151 3.44604 3.72674 3.95752 4.29362 4.45416 4.48211 4.55813 4.88897 5.13397 5.17863 5.20697 5.26623 5.30733 5.31524 5.44806 5.48611 5.52380 5.63408 5.70809 5.77378 5.86911 5.96599 6.13840 6.21551 6.27321 6.94465 6.98068 7.35449 7.39195 7.49310 7.55125 7.70166 7.99311 8.67527 8.81823 9.17639 9.44868 10.94995 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.061920 B = 0.003392 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.087527 B = 8253.062523 C = 8429.162717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C 0.091 3.909 4 O -0.571 6.571 5 C -0.104 4.104 6 C 0.036 3.964 7 N -0.495 5.495 8 C 0.026 3.974 9 C 0.499 3.501 10 O -0.538 6.538 11 N -0.717 5.717 12 C 0.252 3.748 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.044 3.956 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.377 0.623 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.389 0.611 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 18.268 -0.149 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C 0.014 3.986 4 O -0.376 6.376 5 C -0.143 4.143 6 C -0.092 4.092 7 N -0.219 5.219 8 C -0.106 4.106 9 C 0.283 3.717 10 O -0.415 6.415 11 N -0.366 5.366 12 C 0.131 3.869 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.084 4.084 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.223 0.777 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.221 0.779 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.260 17.833 0.729 21.102 hybrid contribution -0.838 -0.718 -1.264 1.677 sum -12.097 17.115 -0.535 20.965 Atomic orbital electron populations 1.21809 0.93565 1.01563 1.02138 1.21413 0.96144 0.93712 0.96020 1.22229 0.97223 0.91654 0.87543 1.86471 1.75263 1.28747 1.47093 1.22513 1.01156 0.94443 0.96138 1.23353 0.98696 0.96704 0.90433 1.64510 1.50550 1.04721 1.02096 1.22218 0.98011 0.91741 0.98592 1.20250 0.85069 0.82772 0.83605 1.90645 1.43290 1.78271 1.29304 1.46445 1.38482 1.16915 1.34777 1.19067 0.86844 0.84899 0.96101 1.21235 1.19278 1.00751 1.16869 0.91948 1.24961 0.94887 0.98705 0.95505 1.69979 1.19979 1.31469 1.30855 0.86419 0.78438 0.81811 0.80254 1.20466 1.21007 1.19770 1.22940 0.95852 0.93599 0.95975 0.92821 0.91573 0.92881 0.92978 0.93861 0.77690 0.90620 0.90963 0.94197 0.88487 0.88469 0.92267 0.77907 0.95659 0.95586 0.92459 0.90231 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.07 37.16 0.30 -0.95 16 2 C -0.07 -0.75 0.77 -153.15 -0.12 -0.87 16 3 C 0.09 0.82 5.61 37.16 0.21 1.03 16 4 O -0.57 -5.07 12.71 -35.23 -0.45 -5.52 16 5 C -0.10 -1.26 5.95 -24.87 -0.15 -1.41 16 6 C 0.04 0.51 5.93 -1.90 -0.01 0.50 16 7 N -0.49 -7.27 4.91 -231.88 -1.14 -8.41 16 8 C 0.03 0.39 5.19 -4.98 -0.03 0.36 16 9 C 0.50 10.15 7.66 -10.99 -0.08 10.07 16 10 O -0.54 -13.19 15.07 5.56 0.08 -13.11 16 11 N -0.72 -15.26 5.55 -61.48 -0.34 -15.60 16 12 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 13 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 17 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.04 0.49 5.99 -2.75 -0.02 0.48 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.65 7.62 -51.93 -0.40 0.25 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.49 8.11 -51.93 -0.42 0.06 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.38 1.68 9.12 45.56 0.42 2.10 16 28 H 0.08 0.97 7.84 -51.93 -0.41 0.57 16 29 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 30 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16 31 H 0.10 1.68 7.10 -51.93 -0.37 1.31 16 32 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 33 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 34 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 39 H 0.05 0.50 7.31 -51.93 -0.38 0.12 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -33.50 319.03 -7.24 -40.75 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.58 Total: 4.30 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.34 Total: 2.43 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.74 Total: -49.59 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.36 Total: -18.63 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.50 -7.24 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381512580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.845 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds