Wall clock time and date at job start Mon Mar 30 2020 04:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48497 * 109.47303 * 269.99799 * 3 2 1 5 5 H 1.48502 * 109.47134 * 30.00598 * 3 2 1 6 6 H 1.48509 * 109.46730 * 150.00060 * 3 2 1 7 7 C 1.37875 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47112 * 174.73987 * 12 11 10 14 14 C 1.48560 * 111.00414 * 174.68641 * 13 12 11 15 15 C 1.54372 * 104.59800 * 200.96177 * 14 13 12 16 16 C 1.54260 * 105.05979 * 23.85441 * 15 14 13 17 17 O 1.42904 * 110.32161 * 241.10497 * 16 15 14 18 18 C 1.50700 * 110.32838 * 118.99960 * 16 15 14 19 19 N 1.34780 * 120.00087 * 87.82340 * 18 16 15 20 20 O 1.21287 * 119.99867 * 267.82935 * 18 16 15 21 21 C 1.48562 * 110.99750 * 59.26812 * 13 12 11 22 22 H 0.96999 * 119.99881 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47540 * 59.99830 * 9 7 2 24 24 H 1.08998 * 109.47173 * 299.99617 * 9 7 2 25 25 H 1.08996 * 109.47467 * 60.00091 * 10 9 7 26 26 H 1.09006 * 109.47337 * 299.99219 * 10 9 7 27 27 H 1.09001 * 109.47442 * 59.99991 * 11 10 9 28 28 H 1.08998 * 109.47372 * 299.99716 * 11 10 9 29 29 H 1.08996 * 109.47257 * 54.74215 * 12 11 10 30 30 H 1.08993 * 109.47609 * 294.73898 * 12 11 10 31 31 H 1.09004 * 110.41215 * 82.17793 * 14 13 12 32 32 H 1.09006 * 110.40695 * 319.74320 * 14 13 12 33 33 H 1.09002 * 110.32862 * 264.95714 * 15 14 13 34 34 H 1.09007 * 110.41361 * 142.79064 * 15 14 13 35 35 H 0.96706 * 113.99928 * 298.54081 * 17 16 15 36 36 H 0.96997 * 119.99846 * 359.97438 * 19 18 16 37 37 H 0.97000 * 119.99669 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.41315 * 40.26245 * 21 13 12 39 39 H 1.09000 * 110.41210 * 277.81835 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0050 13 7 1.7446 -7.4185 0.1215 14 6 2.6654 -8.5775 -0.0042 15 6 1.7518 -9.7600 -0.3915 16 6 0.5135 -9.1126 -1.0450 17 8 -0.6641 -9.4312 -0.3007 18 6 0.3715 -9.5768 -2.4716 19 7 -0.3122 -10.7049 -2.7484 20 8 0.8725 -8.9353 -3.3708 21 6 0.7831 -7.5932 -0.9975 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8880 25 1 2.8720 -3.6051 0.8872 26 1 2.8719 -3.6036 -0.8928 27 1 0.8533 -5.0443 -0.8931 28 1 0.8540 -5.0454 0.8869 29 1 3.1622 -6.0413 0.8337 30 1 3.0369 -6.1459 -0.9386 31 1 3.1602 -8.7749 0.9468 32 1 3.4024 -8.3944 -0.7863 33 1 1.4614 -10.3209 0.4969 34 1 2.2569 -10.4137 -1.1028 35 1 -0.8584 -10.3775 -0.2581 36 1 -0.7125 -11.2181 -2.0292 37 1 -0.4033 -11.0038 -3.6667 38 1 1.2255 -7.2562 -1.9350 39 1 -0.1395 -7.0496 -0.7943 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385180519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:57 Heat of formation + Delta-G solvation = -130.344420 kcal Electronic energy + Delta-G solvation = -19127.122811 eV Core-core repulsion = 16067.567202 eV Total energy + Delta-G solvation = -3059.555608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67699 -39.32560 -37.61995 -36.30372 -34.62439 -34.40208 -32.24885 -29.87721 -29.47452 -26.47087 -24.60334 -23.17942 -22.04154 -21.75481 -20.94297 -19.69058 -18.43480 -18.16292 -17.31266 -16.75719 -16.49804 -16.18349 -15.93913 -15.56175 -15.17311 -15.00386 -14.54059 -14.43014 -13.98469 -13.67887 -13.47530 -13.00611 -12.91363 -12.79219 -12.68198 -12.41900 -12.22913 -12.10338 -11.97524 -11.75727 -11.38311 -11.31416 -11.00298 -10.82517 -10.73010 -10.55997 -9.53716 -8.19942 -6.31935 1.32929 1.39081 1.41487 1.52673 2.21849 2.40941 2.99930 3.08175 3.12495 3.28488 3.43855 3.88903 4.03696 4.13572 4.21547 4.35555 4.47888 4.51487 4.65314 4.66871 4.67378 4.82700 4.86984 4.87514 5.03302 5.17827 5.25958 5.31864 5.53340 5.71951 5.74502 5.77374 5.85755 5.95193 6.18978 6.24975 6.71665 6.85389 7.13943 7.37355 8.92206 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.037696 B = 0.003435 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.610482 B = 8148.698396 C = 8387.734134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.054 3.946 13 N -0.511 5.511 14 C 0.026 3.974 15 C -0.131 4.131 16 C 0.121 3.879 17 O -0.542 6.542 18 C 0.500 3.500 19 N -0.824 5.824 20 O -0.581 6.581 21 C 0.044 3.956 22 H 0.264 0.736 23 H -0.015 1.015 24 H -0.010 1.010 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -27.846 -1.024 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.074 4.074 13 N -0.235 5.235 14 C -0.102 4.102 15 C -0.169 4.169 16 C 0.076 3.924 17 O -0.350 6.350 18 C 0.283 3.717 19 N -0.390 5.390 20 O -0.461 6.461 21 C -0.084 4.084 22 H 0.072 0.928 23 H 0.003 0.997 24 H 0.009 0.991 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.247 0.753 36 H 0.251 0.749 37 H 0.245 0.755 38 H 0.075 0.925 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.915 -26.582 -0.846 26.664 hybrid contribution 0.116 0.315 -1.133 1.181 sum 2.031 -26.267 -1.979 26.419 Atomic orbital electron populations 1.70118 1.07933 1.27794 1.51719 1.26063 0.95830 1.03611 0.94680 0.85392 0.78679 0.78119 0.78513 1.19774 1.20585 1.18517 1.21740 0.93616 0.92428 1.50521 0.92040 1.19017 0.94510 0.93417 0.94488 1.21400 0.97974 0.93382 1.00631 1.21501 0.98056 0.93693 1.01089 1.22260 0.95678 0.88398 1.01059 1.65505 1.14541 1.02490 1.40973 1.23250 0.94756 0.89817 1.02374 1.23011 0.93703 0.97843 1.02366 1.21894 0.88130 0.95902 0.86496 1.86783 1.42871 1.31413 1.73950 1.21334 0.77487 0.81187 0.91644 1.43581 1.55482 1.25688 1.14210 1.90772 1.49628 1.56766 1.48901 1.22949 0.98130 0.93317 0.94025 0.92761 0.99652 0.99133 0.92432 0.93272 0.93869 0.92367 0.89117 0.94618 0.87636 0.93672 0.86321 0.88982 0.75310 0.74877 0.75543 0.92502 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -32.67 9.11 25.60 0.23 -32.44 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.10 -4.22 5.15 30.59 0.16 -4.06 16 11 C -0.11 -3.99 4.92 30.60 0.15 -3.84 16 12 C 0.05 1.63 4.93 86.30 0.43 2.06 16 13 N -0.51 -13.89 5.45 -881.49 -4.81 -18.69 16 14 C 0.03 0.50 6.49 86.45 0.56 1.06 16 15 C -0.13 -1.84 6.44 31.49 0.20 -1.64 16 16 C 0.12 2.36 1.38 -10.64 -0.01 2.34 16 17 O -0.54 -8.77 12.84 -148.98 -1.91 -10.68 16 18 C 0.50 10.04 6.86 87.66 0.60 10.64 16 19 N -0.82 -7.33 8.79 -173.52 -1.53 -8.85 16 20 O -0.58 -17.83 16.44 -3.05 -0.05 -17.88 16 21 C 0.04 1.28 4.56 86.45 0.39 1.67 16 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 23 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.04 1.71 7.21 -2.39 -0.02 1.70 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.04 1.08 7.97 -2.39 -0.02 1.06 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 0.92 7.89 -2.38 -0.02 0.90 16 33 H 0.12 1.08 7.98 -2.39 -0.02 1.06 16 34 H 0.09 1.03 7.70 -2.38 -0.02 1.01 16 35 H 0.40 1.53 7.70 -74.05 -0.57 0.96 16 36 H 0.42 0.33 7.39 -92.71 -0.69 -0.36 16 37 H 0.41 3.03 8.93 -92.71 -0.83 2.20 16 38 H 0.06 1.88 6.66 -2.39 -0.02 1.86 16 39 H 0.08 2.49 7.72 -2.39 -0.02 2.47 16 Total: -1.00 -80.65 318.14 -3.68 -84.32 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -1.02 Total: 5.65 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.32 Total: -22.57 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -6.05 Total: -86.71 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.96 Total: -28.56 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -80.65 -3.68 -84.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385180519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.020 kcal (2) G-P(sol) polarization free energy of solvation -80.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds