Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00295 * 2 1 4 4 H 1.48497 * 109.47628 * 270.00558 * 3 2 1 5 5 H 1.48508 * 109.46819 * 30.00494 * 3 2 1 6 6 H 1.48508 * 109.47404 * 150.00302 * 3 2 1 7 7 C 1.37882 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00128 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99816 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47201 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.46722 * 65.00492 * 12 11 10 14 14 C 1.46901 * 110.99908 * 180.02562 * 13 12 11 15 15 H 1.08993 * 108.56573 * 322.93135 * 14 13 12 16 16 C 1.51779 * 108.61735 * 204.99737 * 14 13 12 17 17 C 1.52988 * 110.87814 * 172.02624 * 16 14 13 18 18 N 1.47195 * 108.66768 * 86.46288 * 17 16 14 19 19 C 1.33371 * 120.43020 * 288.28235 * 18 17 16 20 20 O 1.21278 * 119.89167 * 180.02562 * 19 18 17 21 21 C 1.51425 * 120.21368 * 359.81950 * 19 18 17 22 22 C 1.51798 * 108.50517 * 80.80483 * 14 13 12 23 23 H 0.96998 * 119.99923 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47229 * 59.99994 * 9 7 2 25 25 H 1.08999 * 109.47129 * 299.99548 * 9 7 2 26 26 H 1.09006 * 109.46832 * 60.00318 * 11 10 9 27 27 H 1.08991 * 109.47758 * 299.99938 * 11 10 9 28 28 H 1.09007 * 109.47224 * 305.00366 * 12 11 10 29 29 H 1.09000 * 109.47200 * 185.00322 * 12 11 10 30 30 H 1.00906 * 111.00393 * 303.95008 * 13 12 11 31 31 H 1.08999 * 109.19300 * 51.66652 * 16 14 13 32 32 H 1.09002 * 109.19605 * 292.38842 * 16 14 13 33 33 H 1.08992 * 109.60584 * 326.70729 * 17 16 14 34 34 H 1.08999 * 109.60210 * 206.21179 * 17 16 14 35 35 H 0.97001 * 119.78246 * 107.99759 * 18 17 16 36 36 H 1.08999 * 109.77735 * 311.93038 * 21 19 18 37 37 H 1.08995 * 109.67097 * 191.22144 * 21 19 18 38 38 H 1.08995 * 109.22164 * 308.18343 * 22 14 13 39 39 H 1.09005 * 109.21813 * 67.57679 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9563 -0.0006 13 7 3.4088 -5.8878 1.2541 14 6 4.4603 -6.9130 1.2887 15 1 4.0794 -7.8169 0.8135 16 6 4.7834 -7.2269 2.7381 17 6 5.7287 -8.4256 2.8387 18 7 7.1148 -7.9432 2.7259 19 6 7.5860 -7.5095 1.5560 20 8 8.7297 -7.1146 1.4740 21 6 6.6990 -7.5129 0.3287 22 6 5.6497 -6.4104 0.4907 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 0.9445 -4.9827 -0.8898 27 1 0.9452 -4.9823 0.8902 28 1 3.3209 -5.7958 -0.8430 29 1 2.1818 -6.9376 -0.0898 30 1 3.7976 -4.9668 1.3915 31 1 3.8595 -7.4535 3.2702 32 1 5.2561 -6.3581 3.1962 33 1 5.5184 -9.1261 2.0306 34 1 5.5909 -8.9203 3.8001 35 1 7.6880 -7.9368 3.5084 36 1 6.2034 -8.4792 0.2346 37 1 7.3004 -7.3185 -0.5592 38 1 5.3112 -6.0896 -0.4944 39 1 6.0978 -5.5630 1.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396671293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = -124.665954 kcal Electronic energy + Delta-G solvation = -19093.472332 eV Core-core repulsion = 16034.162961 eV Total energy + Delta-G solvation = -3059.309372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25197 -39.13909 -38.18912 -36.19328 -34.94247 -33.54484 -31.99781 -29.98351 -28.56287 -25.97827 -25.00244 -24.51050 -22.68459 -21.52854 -20.69183 -18.66293 -18.28130 -17.80274 -17.46716 -16.90122 -16.38478 -16.37939 -16.02187 -15.38119 -15.13449 -14.94339 -14.63322 -14.41391 -13.82762 -13.55777 -13.38208 -13.26377 -13.10032 -12.81028 -12.71098 -12.46917 -12.43443 -12.27796 -11.94137 -11.76925 -11.47438 -11.28395 -10.89582 -10.85881 -10.22859 -10.11026 -9.31588 -8.33297 -6.45490 1.39124 1.41399 1.53447 1.61247 2.33548 2.40784 3.00771 3.15501 3.25142 3.50214 3.73141 3.96860 4.11103 4.24850 4.29831 4.35631 4.44368 4.50425 4.54693 4.65634 4.67996 4.78998 4.82057 4.91941 4.96136 5.06283 5.09811 5.18587 5.22017 5.38945 5.53813 5.90241 5.95302 6.17379 6.27755 6.38130 6.53400 6.81860 7.23797 7.26679 8.79036 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.003833 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.593511 B = 7302.610940 C = 7898.762021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.212 3.788 10 O -0.410 6.410 11 C 0.051 3.949 12 C 0.074 3.926 13 N -0.692 5.692 14 C 0.087 3.913 15 H 0.101 0.899 16 C -0.127 4.127 17 C 0.112 3.888 18 N -0.714 5.714 19 C 0.512 3.488 20 O -0.613 6.613 21 C -0.126 4.126 22 C -0.140 4.140 23 H 0.271 0.729 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.339 0.661 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -20.701 4.270 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.137 3.863 10 O -0.330 6.330 11 C -0.026 4.026 12 C -0.055 4.055 13 N -0.322 5.322 14 C -0.022 4.022 15 H 0.119 0.881 16 C -0.166 4.166 17 C -0.012 4.012 18 N -0.364 5.364 19 C 0.299 3.701 20 O -0.495 6.495 21 C -0.166 4.166 22 C -0.179 4.179 23 H 0.080 0.920 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.129 0.871 30 H 0.157 0.843 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.239 0.761 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.065 -20.761 4.417 22.706 hybrid contribution 0.601 1.617 -0.383 1.767 sum 8.666 -19.144 4.034 21.398 Atomic orbital electron populations 1.70060 1.07718 1.28644 1.50485 1.25923 0.95924 1.03285 0.93926 0.85218 0.78355 0.77227 0.78821 1.19305 1.19852 1.19058 1.21389 0.94030 0.90961 1.52243 0.92149 1.19766 0.88537 0.84612 0.93381 1.87752 1.35544 1.14480 1.95213 1.22661 0.96366 0.83896 0.99685 1.21996 0.94682 0.97800 0.91033 1.60761 1.27408 1.09022 1.34982 1.21400 0.88733 0.95769 0.96333 0.88099 1.21788 1.00824 0.98510 0.95470 1.22019 0.77848 0.95494 1.05820 1.46055 1.15865 1.63775 1.10751 1.21036 0.86975 0.75295 0.86760 1.90725 1.21856 1.50299 1.86656 1.21888 0.97236 1.02314 0.95183 1.21965 0.96445 0.97734 1.01772 0.92022 0.99719 0.99719 0.93513 0.93875 0.94724 0.87074 0.84335 0.88643 0.93257 0.88315 0.86231 0.76068 0.85791 0.89107 0.90869 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -32.81 9.43 25.60 0.24 -32.56 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.92 5.69 71.23 0.41 12.33 16 10 O -0.41 -19.53 9.85 -148.98 -1.47 -21.00 16 11 C 0.05 1.81 6.28 71.98 0.45 2.26 16 12 C 0.07 1.90 5.87 86.31 0.51 2.41 16 13 N -0.69 -17.43 6.17 -495.71 -3.06 -20.49 16 14 C 0.09 1.50 2.00 44.12 0.09 1.59 16 15 H 0.10 1.25 7.52 -2.39 -0.02 1.23 16 16 C -0.13 -1.78 5.29 30.19 0.16 -1.62 16 17 C 0.11 0.91 6.47 86.24 0.56 1.47 16 18 N -0.71 -10.53 5.27 -462.61 -2.44 -12.97 16 19 C 0.51 11.37 7.04 88.11 0.62 11.99 16 20 O -0.61 -20.12 17.92 -3.02 -0.05 -20.17 16 21 C -0.13 -2.12 5.58 30.10 0.17 -1.96 16 22 C -0.14 -2.80 4.90 30.22 0.15 -2.65 16 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 25 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.91 6.95 -2.38 -0.02 0.89 16 29 H 0.11 2.10 8.04 -2.39 -0.02 2.08 16 30 H 0.34 10.65 8.06 -89.69 -0.72 9.93 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 0.93 8.05 -2.39 -0.02 0.91 16 33 H 0.10 0.46 6.71 -2.39 -0.02 0.44 16 34 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.40 5.41 8.91 -92.71 -0.83 4.58 16 36 H 0.12 1.21 6.77 -2.39 -0.02 1.19 16 37 H 0.09 1.66 8.13 -2.39 -0.02 1.65 16 38 H 0.07 1.57 6.88 -2.39 -0.02 1.56 16 39 H 0.04 1.09 7.85 -2.38 -0.02 1.08 16 Total: -1.00 -75.08 316.22 -1.40 -76.47 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.50 Total: 13.04 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.81 Total: -5.82 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -5.21 Total: -89.23 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.52 Total: -41.17 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -75.08 -1.40 -76.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396671293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.193 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds