Wall clock time and date at job start Mon Mar 30 2020 04:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.56837 * 2 1 4 4 N 1.46900 * 109.47219 * 302.67892 * 3 2 1 5 5 C 1.46897 * 111.00329 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47219 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99642 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99744 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99618 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46733 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00427 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99564 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00048 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99708 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47447 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47356 * 119.99954 * 14 12 10 17 17 H 1.48502 * 109.47153 * 239.99963 * 14 12 10 18 18 C 1.54517 * 110.51048 * 122.68016 * 2 1 3 19 19 C 1.54481 * 104.06349 * 118.64512 * 18 2 1 20 20 O 1.44422 * 104.80535 * 23.97783 * 19 18 2 21 21 C 1.44433 * 105.27452 * 319.49061 * 20 19 18 22 22 H 1.09006 * 109.47067 * 297.32261 * 1 2 3 23 23 H 1.08996 * 109.46731 * 57.32202 * 1 2 3 24 24 H 1.08997 * 109.47347 * 177.32067 * 1 2 3 25 25 H 1.09003 * 109.46996 * 62.67621 * 3 2 1 26 26 H 1.09004 * 109.47328 * 182.67980 * 3 2 1 27 27 H 1.00904 * 110.99794 * 56.03838 * 4 3 2 28 28 H 1.08999 * 109.47149 * 300.00091 * 5 4 3 29 29 H 1.08998 * 109.47187 * 59.99882 * 5 4 3 30 30 H 0.96998 * 120.00800 * 359.97438 * 8 6 5 31 31 H 1.08995 * 109.46779 * 299.99982 * 9 8 6 32 32 H 1.09003 * 109.47023 * 60.00265 * 9 8 6 33 33 H 0.97006 * 119.99735 * 179.97438 * 13 12 10 34 34 H 1.08996 * 110.50794 * 237.28913 * 18 2 1 35 35 H 1.08995 * 110.50736 * 359.85538 * 18 2 1 36 36 H 1.08995 * 110.37274 * 142.81171 * 19 18 2 37 37 H 1.08999 * 110.36722 * 265.03812 * 19 18 2 38 38 H 1.08997 * 110.37115 * 281.68143 * 21 20 19 39 39 H 1.08995 * 110.37312 * 159.34452 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 7 1.5394 2.1536 -1.1657 5 6 2.0350 3.5361 -1.1985 6 6 1.4738 4.2425 -2.4056 7 8 0.7343 3.6522 -3.1642 8 7 1.7947 5.5298 -2.6426 9 6 1.2495 6.2164 -3.8165 10 6 1.7579 7.6347 -3.8499 11 1 2.4210 7.9891 -3.0746 12 6 1.3772 8.4795 -4.8709 13 7 0.5701 8.0478 -5.8152 14 14 2.0079 10.2373 -4.9127 15 1 2.8948 10.4730 -3.7452 16 1 2.7718 10.4595 -6.1666 17 1 0.8591 11.1768 -4.8599 18 6 2.0714 -0.7814 1.2181 19 6 2.8757 -1.9423 0.5921 20 8 3.2399 -1.4715 -0.7238 21 6 2.0713 -0.7812 -1.2178 22 1 -0.3633 0.4717 0.9131 23 1 -0.3633 0.5548 -0.8650 24 1 -0.3634 -1.0265 -0.0480 25 1 1.7535 1.9383 0.9130 26 1 3.1563 1.4120 -0.0480 27 1 0.5307 2.1310 -1.1785 28 1 1.7205 4.0563 -0.2937 29 1 3.1235 3.5306 -1.2546 30 1 2.3864 6.0019 -2.0361 31 1 1.5646 5.6957 -4.7207 32 1 0.1609 6.2222 -3.7610 33 1 0.3020 8.6423 -6.5333 34 1 2.7219 -0.1472 1.8203 35 1 1.2490 -1.1655 1.8216 36 1 3.7688 -2.1468 1.1825 37 1 2.2569 -2.8366 0.5192 38 1 1.3285 -1.4969 -1.5701 39 1 2.3464 -0.0939 -2.0177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397259454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:09 Heat of formation + Delta-G solvation = -92.701611 kcal Electronic energy + Delta-G solvation = -18906.178119 eV Core-core repulsion = 15848.254825 eV Total energy + Delta-G solvation = -3057.923294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06810 -38.78201 -36.11719 -34.16047 -33.22988 -32.30043 -29.96243 -28.25423 -26.87292 -26.16597 -24.25674 -22.65187 -22.05529 -19.81450 -19.37166 -17.33834 -16.38270 -16.23908 -15.78327 -15.59172 -15.29476 -15.11108 -14.49267 -14.34654 -13.89806 -13.60299 -13.28973 -12.99204 -12.65991 -12.62392 -12.25380 -11.94308 -11.76117 -11.61883 -11.46486 -11.05902 -10.95218 -10.90041 -10.81488 -10.75640 -10.31988 -9.85189 -9.37890 -9.03880 -8.73796 -8.39242 -7.86274 -6.16718 -4.23568 3.23335 3.30366 3.33390 3.39357 3.76376 3.86427 4.25823 4.35918 4.45688 4.61237 4.67186 4.89313 4.95298 5.05718 5.19422 5.33159 5.38360 5.42834 5.45128 5.48971 5.53861 5.58108 5.64813 5.66801 5.78785 5.83690 6.02273 6.07621 6.68255 6.88288 7.31835 7.37665 7.45580 7.52714 7.67780 7.97386 8.64114 8.79073 9.12308 9.43265 10.93540 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.055072 B = 0.003148 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.303789 B = 8893.640433 C = 8970.134336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C 0.074 3.926 4 N -0.672 5.672 5 C 0.040 3.960 6 C 0.496 3.504 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.250 3.750 10 C -0.543 4.543 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.147 4.147 19 C 0.044 3.956 20 O -0.376 6.376 21 C 0.056 3.944 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.350 0.650 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.390 0.610 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -15.732 15.909 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.055 4.055 4 N -0.306 5.306 5 C -0.092 4.092 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.364 5.364 9 C 0.129 3.871 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.186 4.186 19 C -0.033 4.033 20 O -0.295 6.295 21 C -0.020 4.020 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.171 0.829 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.222 0.778 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.812 -16.333 14.620 22.100 hybrid contribution -0.158 1.697 1.064 2.009 sum 2.653 -14.636 15.684 21.615 Atomic orbital electron populations 1.21880 0.93487 1.02289 1.02499 1.21930 0.96359 0.95529 0.95380 1.21984 1.00280 0.92117 0.91146 1.60136 1.15600 1.13193 1.41681 1.21832 1.01576 0.89276 0.96557 1.20352 0.82141 0.82612 0.86863 1.90660 1.37190 1.65854 1.48534 1.46448 1.49316 1.11189 1.29408 1.19096 0.94593 0.91006 0.82357 1.21270 1.30448 0.95923 1.10461 0.91867 1.24961 0.94853 0.99135 0.95133 1.69989 1.33521 1.36253 1.12509 0.86361 0.78649 0.83794 0.78095 1.19644 1.20778 1.20814 1.23062 1.00281 0.97543 0.97677 1.23359 0.99190 0.96022 0.84729 1.89148 1.35873 1.73812 1.30641 1.23587 0.87319 0.94493 0.96613 0.92444 0.91237 0.92238 0.95115 0.90409 0.82868 0.92897 0.88543 0.77787 0.95505 0.95626 0.92501 0.90587 0.90396 0.89431 0.92587 0.92543 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 7.99 37.16 0.30 -0.95 16 2 C -0.09 -0.86 0.84 -152.94 -0.13 -0.99 16 3 C 0.07 0.77 4.47 -3.82 -0.02 0.76 16 4 N -0.67 -8.97 5.48 -115.06 -0.63 -9.60 16 5 C 0.04 0.56 6.17 -4.98 -0.03 0.53 16 6 C 0.50 9.81 7.87 -10.99 -0.09 9.73 16 7 O -0.54 -13.04 16.20 5.55 0.09 -12.95 16 8 N -0.71 -14.97 5.55 -61.46 -0.34 -15.31 16 9 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 10 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 11 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 14 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.15 -1.13 6.38 -25.16 -0.16 -1.29 16 19 C 0.04 0.37 7.63 37.93 0.29 0.66 16 20 O -0.38 -4.56 11.65 -35.23 -0.41 -4.97 16 21 C 0.06 0.63 6.66 37.93 0.25 0.89 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 24 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.35 4.82 6.42 -39.29 -0.25 4.57 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 0.55 7.73 -51.93 -0.40 0.15 16 35 H 0.08 0.50 7.73 -51.93 -0.40 0.09 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 39 H 0.11 1.45 7.42 -51.93 -0.39 1.07 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -32.34 320.42 -7.06 -39.40 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.28 Total: 5.66 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.03 Total: 2.54 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.23 Total: -50.36 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.32 Total: -17.92 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.34 -7.06 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397259454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.300 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds