Wall clock time and date at job start Mon Mar 30 2020 04:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.56837 * 2 1 4 4 N 1.46900 * 109.47219 * 302.67892 * 3 2 1 5 5 C 1.46897 * 111.00329 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47219 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99642 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99744 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99618 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46733 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00427 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99564 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00048 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99708 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47447 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47356 * 119.99954 * 14 12 10 17 17 H 1.48502 * 109.47153 * 239.99963 * 14 12 10 18 18 C 1.54517 * 110.51048 * 122.68016 * 2 1 3 19 19 C 1.54481 * 104.06349 * 118.64512 * 18 2 1 20 20 O 1.44422 * 104.80535 * 23.97783 * 19 18 2 21 21 C 1.44433 * 105.27452 * 319.49061 * 20 19 18 22 22 H 1.09006 * 109.47067 * 297.32261 * 1 2 3 23 23 H 1.08996 * 109.46731 * 57.32202 * 1 2 3 24 24 H 1.08997 * 109.47347 * 177.32067 * 1 2 3 25 25 H 1.09003 * 109.46996 * 62.67621 * 3 2 1 26 26 H 1.09004 * 109.47328 * 182.67980 * 3 2 1 27 27 H 1.00904 * 110.99794 * 56.03838 * 4 3 2 28 28 H 1.08999 * 109.47149 * 300.00091 * 5 4 3 29 29 H 1.08998 * 109.47187 * 59.99882 * 5 4 3 30 30 H 0.96998 * 120.00800 * 359.97438 * 8 6 5 31 31 H 1.08995 * 109.46779 * 299.99982 * 9 8 6 32 32 H 1.09003 * 109.47023 * 60.00265 * 9 8 6 33 33 H 0.97006 * 119.99735 * 179.97438 * 13 12 10 34 34 H 1.08996 * 110.50794 * 237.28913 * 18 2 1 35 35 H 1.08995 * 110.50736 * 359.85538 * 18 2 1 36 36 H 1.08995 * 110.37274 * 142.81171 * 19 18 2 37 37 H 1.08999 * 110.36722 * 265.03812 * 19 18 2 38 38 H 1.08997 * 110.37115 * 281.68143 * 21 20 19 39 39 H 1.08995 * 110.37312 * 159.34452 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 7 1.5394 2.1536 -1.1657 5 6 2.0350 3.5361 -1.1985 6 6 1.4738 4.2425 -2.4056 7 8 0.7343 3.6522 -3.1642 8 7 1.7947 5.5298 -2.6426 9 6 1.2495 6.2164 -3.8165 10 6 1.7579 7.6347 -3.8499 11 1 2.4210 7.9891 -3.0746 12 6 1.3772 8.4795 -4.8709 13 7 0.5701 8.0478 -5.8152 14 14 2.0079 10.2373 -4.9127 15 1 2.8948 10.4730 -3.7452 16 1 2.7718 10.4595 -6.1666 17 1 0.8591 11.1768 -4.8599 18 6 2.0714 -0.7814 1.2181 19 6 2.8757 -1.9423 0.5921 20 8 3.2399 -1.4715 -0.7238 21 6 2.0713 -0.7812 -1.2178 22 1 -0.3633 0.4717 0.9131 23 1 -0.3633 0.5548 -0.8650 24 1 -0.3634 -1.0265 -0.0480 25 1 1.7535 1.9383 0.9130 26 1 3.1563 1.4120 -0.0480 27 1 0.5307 2.1310 -1.1785 28 1 1.7205 4.0563 -0.2937 29 1 3.1235 3.5306 -1.2546 30 1 2.3864 6.0019 -2.0361 31 1 1.5646 5.6957 -4.7207 32 1 0.1609 6.2222 -3.7610 33 1 0.3020 8.6423 -6.5333 34 1 2.7219 -0.1472 1.8203 35 1 1.2490 -1.1655 1.8216 36 1 3.7688 -2.1468 1.1825 37 1 2.2569 -2.8366 0.5192 38 1 1.3285 -1.4969 -1.5701 39 1 2.3464 -0.0939 -2.0177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397259454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:08 Heat of formation + Delta-G solvation = -118.310071 kcal Electronic energy + Delta-G solvation = -18907.288585 eV Core-core repulsion = 15848.254825 eV Total energy + Delta-G solvation = -3059.033760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91354 -40.35693 -37.13577 -36.07713 -34.37741 -34.11729 -30.73210 -29.85185 -28.09579 -27.20363 -25.42977 -24.20690 -23.06563 -21.41276 -20.27478 -18.98526 -17.74786 -17.22463 -17.14956 -16.90175 -16.58952 -16.22672 -15.90980 -15.66064 -15.19505 -14.74654 -14.37864 -14.11236 -13.97030 -13.84086 -13.65479 -13.39519 -12.99825 -12.88296 -12.73511 -12.46260 -12.31296 -12.22204 -11.81426 -11.60623 -11.45776 -11.42595 -10.81733 -10.71619 -10.64417 -9.82168 -9.36938 -8.29464 -6.46046 1.43178 1.44381 1.57839 1.79636 2.29271 2.49974 3.05529 3.12845 3.26533 3.66239 3.77563 3.89111 4.00710 4.26147 4.29884 4.32321 4.39628 4.46865 4.66997 4.68958 4.76978 4.84280 4.91835 4.97457 5.02226 5.11151 5.17838 5.24382 5.24521 5.34149 5.49253 5.68597 5.84999 5.91600 5.97673 6.34100 6.65694 6.94758 7.23657 7.52521 8.83020 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.055072 B = 0.003148 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.303789 B = 8893.640433 C = 8970.134336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C 0.078 3.922 4 N -0.690 5.690 5 C 0.057 3.943 6 C 0.492 3.508 7 O -0.592 6.592 8 N -0.709 5.709 9 C 0.267 3.733 10 C -0.555 4.555 11 H 0.084 0.916 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.280 1.280 17 H -0.279 1.279 18 C -0.139 4.139 19 C 0.037 3.963 20 O -0.404 6.404 21 C 0.055 3.945 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.346 0.654 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.409 0.591 31 H -0.015 1.015 32 H -0.013 1.013 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 -15.224 18.683 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.051 4.051 4 N -0.324 5.324 5 C -0.075 4.075 6 C 0.279 3.721 7 O -0.473 6.473 8 N -0.360 5.360 9 C 0.144 3.856 10 C -0.593 4.593 11 H 0.102 0.898 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.177 4.177 19 C -0.039 4.039 20 O -0.323 6.323 21 C -0.022 4.022 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.244 0.756 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.011 -15.843 17.454 23.911 hybrid contribution -0.536 1.425 0.191 1.535 sum 3.475 -14.418 17.645 23.050 Atomic orbital electron populations 1.21853 0.92876 1.02773 1.02322 1.21914 0.96773 0.94889 0.95392 1.22017 0.99978 0.92430 0.90634 1.60122 1.15503 1.12955 1.43833 1.21739 1.02241 0.89356 0.94177 1.21456 0.80890 0.81855 0.87911 1.90638 1.39272 1.66736 1.50659 1.46183 1.49679 1.11899 1.28235 1.18520 0.92449 0.91597 0.83064 1.21662 1.30599 0.95915 1.11091 0.89752 1.26088 0.94785 1.04383 0.94492 1.70150 1.35080 1.38333 1.13470 0.85099 0.78185 0.77176 0.78674 1.17556 1.20542 1.20422 1.23040 1.00833 0.96958 0.96878 1.23594 1.00290 0.96684 0.83376 1.89114 1.36484 1.74162 1.32547 1.23522 0.87304 0.94410 0.96940 0.91081 0.93067 0.91298 0.93122 0.90697 0.83309 0.89612 0.86440 0.75582 0.99735 0.99482 0.92265 0.89695 0.88495 0.88048 0.91601 0.92257 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.99 71.98 0.57 -1.62 16 2 C -0.09 -1.52 0.84 -51.16 -0.04 -1.56 16 3 C 0.08 1.46 4.47 86.30 0.39 1.84 16 4 N -0.69 -17.70 5.48 -517.94 -2.84 -20.54 16 5 C 0.06 1.48 6.17 85.56 0.53 2.01 16 6 C 0.49 19.54 7.87 87.66 0.69 20.23 16 7 O -0.59 -29.50 16.20 -3.04 -0.05 -29.55 16 8 N -0.71 -29.83 5.55 -466.77 -2.59 -32.42 16 9 C 0.27 14.77 5.43 85.63 0.46 15.23 16 10 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 11 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 14 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 15 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 18 C -0.14 -1.73 6.38 31.61 0.20 -1.53 16 19 C 0.04 0.55 7.63 72.49 0.55 1.10 16 20 O -0.40 -9.50 11.65 -148.98 -1.74 -11.24 16 21 C 0.05 1.22 6.66 72.48 0.48 1.70 16 22 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.05 0.99 6.50 -2.39 -0.02 0.98 16 24 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.35 9.40 6.42 -89.69 -0.58 8.82 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 34 H 0.08 0.93 7.73 -2.39 -0.02 0.91 16 35 H 0.10 0.87 7.73 -2.39 -0.02 0.85 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 1.24 7.83 -2.39 -0.02 1.22 16 39 H 0.08 2.29 7.42 -2.39 -0.02 2.27 16 Total: -1.00 -73.21 320.42 -0.67 -73.87 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.30 Total: 23.84 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.54 Total: 7.93 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -5.14 Total: -109.28 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.79 Total: -40.79 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.21 -0.67 -73.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397259454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.435 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds